CI01000001_10487487_10496560 (PHF8)


Basic Information

Item Value
gene id CI01000001_10487487_10496560
gene name PHF8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10487225 ~ 10496560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10487487_10496560.mRNA
GCCGCGCAGGCCTCGGATTTTCCTAAAATTTCGTCCGGCATGGTGCGCTCGGCCCACGGGAAACTCGCGGCATTTCTCACCCGTTGTGTTGGAGTGGAAGAGGATAAAGCGGCAGAAATTGACCTGTATCACTGTCCTAACTGTCAGGTGACACATGGACCCTCTGTCATGCGCAAACGACGGGGCGCTGTTAAGCACGTTGATGCTGGTGTGGGGAGAGACTCGGGACGACCTGTGAAGACGGGCAGCGCTCAGTTTGTCAGGGAGCTACGCAGCCGCACTTTTCCCAGTGCTGATGAAGTCCTGCTGAAGCCAACCGGGGCCCAGCTCACCGTTGAGTTTCTAGAGGAGCGCTCTTTCAGCGTCCCGGTCCTGGTCCTCAGGAAAGATGGCCTGGGCATGAATCTGCCCCCGTCGTCCTTCTCTGTATCGGATGTAGAGCATTATATTGGTAATAACTCTAATCACATCTTCAGTGTGCTACGTTTTCAGTCGTATGTTTGTGAAAAGTCATGTTTAAATAGGAATGTAATGTCCTATGATTGTGTCATAGGGGCTGACAAGGAAATTGACGTGATTGATGTGAACCGTCAAGCAGACCTGAAGATGAAACTGGGAGAGTTTGTGGAGTACTATAACAGCCCAAACAGGGACCGAGTTCTCAATGTGATCAGCTTAGAGTTCTCAGACACCAGGTTGTCAAATCTGGTGGAGACACCAAAGATCGTGAGGAAGCTGTCATGGGTGGAGAATCTCTGGCCTGAGGAGTCTGTCTTTGAGAGGCCTAATGTGCAGAAATACTGCCTGATGGGAGTGAAGGACAGTTACACTGACTTTCACATTGACTTTGGAGGAACCTCTGTGTGGTACCACGTACTCCGGGGTGAGAAGATCTTTTACCTCATTCGTCCCACTGCTGCTAACCTGTCTCTTTTTGAGCGCTGGAGTTCATCCTCCAATCAGAATGAGCTGTTCTTTGGGGACCAGGTAGACATGTGCTACAAATGTTCACTTAAGCAAGGAAACACCCTCTTCATCCCAACAGGGTGGATTCATGCTGTCCTGACCCCTGTGGACTGTTTGGCATTTGGCGGAAATTTTCTACACAGCCTCAACATTGACATGCAGCTTCGAGCATATGAGATAGAAAAGCGTCTGAGCACGGCAGACTTATTCAGGTTTCCAAACTTTGAGACGGTGTGCTGGTATGTTGGCAAGCATCTGCTTGATACCTTCAGAGGTCTGAGAGAGAATCGACGGCATCCTGCCACTTATTTGGTCCACGGAGCCAAAGCTCTCAATAATGCTTTCCGTAGCTGGACACGGAAGGAATCCCTGGCTGAGCATGAACATGAGATACCGGAGACCATAAAGATCCAGCAGCTAGTGAAGGACCTGGCTAAGGAGATACGCCTGGTTGAGGATATCTTCCAGCAGAACATCGGCAGGAGTGGGACACCCTTTGGTGGCTCTCAGGGTCTTCCCTCTCCTCACCCCAAAGCTCCGTTGAACACATCCCTTGCTTTTGGCCAGCACCTAGGTAAAAAGAGAGGTCCCAAGCTGAAGGACGGATTTGGAGGAATGGGCATAGGCCCTCCGGGAGCTAAGAAAAAGAGCCAAAAAGGCAAAGAGATAAAGACAGAAGCCGGAGAGCTGGACCTACTCGAGATTCATACTAAACACACGCTCAAGAAATTCCAGCCAGGGTGCAAAGTCAAAAAGAGCAAGCTTGAGCTGCCTGATGACTGTCTAGATGACTTCGAAGAGAAGATCAACAAAAGCAAGCTCAAACTTGTGCTGACTAATGGAAAGATACAAGGGAAGAAAGGTCGTGCTGGCAGTGCAAATGGAGCCGGGAGTTCACTTCAACAGTTCCAGCCCCACATGGCTACTTTGTCTGACTTTGATTCAGAAGATGAGCTTCAGATCGATGAAACCCCTCCACCTCGCCGTAGACCATCTCTGCCAAGCAAGAAGAAGTTAGCTGGTCTACCAAGGAAACTACCTCGGGCCAAACCATGCAGCGACCCCCACAGAATCCGTGAGCCAGGAGAAGTGGACTTTGATATTGAGGAGGATTACACCACAGATGAAGAGATGCTCACAGTCCAGGGTGTGAAAGGTGGAGCAGGTGAGATGCTGGGGCTTTTAAAGGAGAAAGGCGGGAGAGCTGGGTGGATAAGTGGAGTCAAGAAGAATGAGAAGAAGACCACCATTCAGAGGCCAGGGAAACGGCCCATCAAGCGTCCAGCACGGCACCTCAGTGATGAAGAAAGCTTGGATGAACAGGAGACCCTGGGTACCTGTTTTAAAGACTCTGATTACGTTTATCCGTCGCTAGAATCTGACGAGGAGGATCACATCAGCAAGTCCAAAATGAAAAGAAAGCGAAACTGGGATGATACACCTTGGAGTCCTAAAGCCCGTGTGACCCCTACACTGCCCAAGCAGGAGCGACCGGTAAGAGAGGGTGCCAGGGTGGCGTCTGTAGAAACTGGGCTTGCAGCTGCTGCTGCCAAACTGGCACAACAGGAACAGCAGAAAACCATAACCAAGAGAAGATACACCAAGAAGAAGGTCCCTCAAGAGAAGGTACATTCTGCAGCTGCCCAACTCCAGCGTCAGCCGGACTCTGCACCCGTGTCTCCTCCGCTGCCCTCTGAGCCTCCTGTGGACTGCATAGTTGAAGAGAGGAGAGTGGAGGTGTACTCTGCCAGCCTGCTGGACCACGAGTACACCGCAGGACCAGGCCCGTTCAGCCCTGGGGGTCCAAGAGGAAGTGGCGCCATGGCCCCTGGCGTGTTTCTGACTTCAAGACGCCCCTCTCTCTCTCCTCAAAACAGCAGCAGCTACTCTCCCTCTGCCCCCTCACCCGGAGGTCTGGCGACTCCAACATCAGCAGGAGTGTGTCAAGGGAAACGTCCAAAGAAAGGACTTGCCACAGCTAAACAGAGACTGGGAAAAATTCTGAAAATACATCGAAACGGCAAGCTTCTCCTGTAGATTGATAATATGGAGAAGAGACTGCAGGGAACAATAGAGGTGGAGAAAACGAATAAGGATGAGAGGACCTGAAGTTAAATTATGTGACTGTTTTATGGTTAATGTTCTGCTTGCCTGGTTTTATTTGCTTCATCAGGGCGAAAAAGTGAAAAGAATGGTAACTTGCTGTGAGAAAATTCAAGTGAAATCCATTTAGCATGGTGTTTTAGAATAGAAATTTTATTTGAAAAGCAAATAGAGCTAAACAGATGGATACATTAAA

Function

symbol description
phf8 Predicted to enable chromatin binding activity; histone demethylase activity; and methylated histone binding activity. Involved in positive regulation of transcription, DNA-templated. Acts upstream of or within brain development; embryonic organ development; and regulation of neuron apoptotic process. Predicted to be located in nucleolus. Is expressed in head; mandibular arch skeleton; and tail bud. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Siderius type. Orthologous to human PHF8 (PHD finger protein 8).

GO:

id name namespace
GO:0043523 regulation of neuron apoptotic process biological_process

KEGG:

id description
K19415 PHF8, JHDM1F; [histone H3]-dimethyl-L-lysine9 demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10487487_10496560.mRNA True 3265 mRNA 0.50 20 10487225 10496560

Neighbor

gene id symbol gene type direction distance location
CI01000001_10475281_10484892 NA coding downstream 2333 10474986 ~ 10484892 (-)
CI01000001_10460515_10473374 PFKMA coding downstream 13851 10459964 ~ 10473374 (-)
CI01000001_10440005_10457383 LARP4AA coding downstream 29842 10439161 ~ 10457383 (-)
CI01000001_10429436_10432248 ASB8 coding downstream 53666 10428945 ~ 10433559 (-)
CI01000001_10396483_10409163 ATF7, ATF7A coding downstream 78062 10396483 ~ 10409163 (-)
CI01000001_10503104_10506678 ARF2B, ARF3A, ARF2A, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF5.L coding upstream 6101 10502661 ~ 10508335 (-)
CI01000001_10513629_10520878 WNT10B coding upstream 17003 10513563 ~ 10521054 (-)
CI01000001_10542497_10550979 IKZF4 coding upstream 45371 10540670 ~ 10550979 (-)
CI01000001_10556067_10557569 DNAJC22 coding upstream 59444 10556004 ~ 10558535 (-)
CI01000001_10638148_10656332 ACV1B, ACVR1BA, ACVR1BB, ACVR1B coding upstream 141540 10638100 ~ 10657269 (-)
G20061 NA non-coding downstream 70697 10378635 ~ 10416528 (-)
G20062 NA non-coding downstream 109519 10370339 ~ 10377706 (-)
G20106 NA non-coding downstream 261848 10224882 ~ 10225377 (-)
G20089 NA non-coding downstream 366491 10120439 ~ 10120734 (-)
G20034 NA non-coding downstream 421773 10034267 ~ 10065452 (-)
G20152 NA non-coding upstream 34215 10530775 ~ 10531128 (-)
G20136 NA non-coding upstream 42467 10539027 ~ 10539850 (-)
G20153 NA non-coding upstream 57448 10554008 ~ 10555307 (-)
G20156 NA non-coding upstream 65075 10561635 ~ 10561980 (-)
CI01000001_09804494_09811219 NA other downstream 666329 9804429 ~ 9811219 (-)
G18223 NA other downstream 2558708 7926104 ~ 7928517 (-)
G18023 NA other downstream 2729705 7756501 ~ 7757520 (-)
G17911 NA other downstream 3233971 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 3550002 6931621 ~ 6937231 (-)
CI01000001_10862471_10864514 NA other upstream 365665 10862225 ~ 10865770 (-)
G20230 NA other upstream 525567 11022127 ~ 11028777 (-)
G20319 NA other upstream 614277 11110837 ~ 11114747 (-)
G20315 NA other upstream 623592 11116755 ~ 11120830 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022409 phf8 coding NC_007134.7 CM002907.2 27591366 ~ 27608257 (-)