CI01000001_10396483_10409163 (ATF7, ATF7A)


Basic Information

Item Value
gene id CI01000001_10396483_10409163
gene name ATF7, ATF7A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10396483 ~ 10409163 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10396483_10409163.mRNA
CTGCACTTCTGAACGGAAGCACAAAGATATGTAAGCGTTGTAAGACTGGAAGCTGTATAAGGGTACAAAGGTTAGCTGTGAAACAGAAAGCCACCTTTAGTAGGTTTACTAATGAGGACCACCTGGCTGTCCACAAACACAAACATGAAATGACGCTGAAGTTTGGACCCGCCAGAACGGACTCAGTCATCATTGCAGACCAGACGCCGACTCCCACTCGTTTCCTGAAAAACTGTGAAGAGGTGGGCCTGTTCAATGAGTTGGCCGGCTCGTTCGAGCAGGAATTCCCTAAAGGCCAAGAAGATGAGGACAAGAGGGCCAAGAACCCGTTACCCGCTCCTAATTCAGGAGCACTAGACATGAGTTTGCAGACGCCTTCAGACGTTAAGGTGAAGGAGGAGGACCCCGTGGAGGTGGACTCCTCTCCGCCTGGCAGCCCTGACTCCTTCTCCAGCATGTCAGATAGCAGCAGAGAGCCCGCAGGCAGAGGACAGGATTCTCCTCCAAAGCCCGCCGTCAGTTCAGCTCCCACCCCTGCCATAGTGCGTCCGGGATCTCTCCCCCTGCACCTGGGTTATGATGCCCTGCAGCCCACCATGCCCTCCCCTACCTCCGTCATCACACATACCCCACCATCCAACCGCACACTGGGGTCTCCCACAGTGCCGTACCCAATGATGATGCTTCCCAATGGTCAGACAGTTCCTGTGCTTCCAGGTCCTATGCAGATGCCCTCTGTAATATCTCTGGCGAGGCCCCTGTGTATGGTGCCTAACATTCCAGGAATTCCCGGCCCTCCACTAGGGGGCAGCAGCAGCGGCTCGTCTTCACCCTCCGGTTATAACCCCCACACTGATGCAAAGATGAGGTTAAAGGCAGCATTATCTCAGCAGACGCCCTCAGCTCAGGGTGTTCTTGGTGTGGCGATGGGGTCCAGTGCGATGGTGCCTCAAAGGGTTGAGCAAAGCCAGCTGCTGGTCCAGCATCCAGATGCCCCTTCCCCTGCTCAGCCACAGGTGTCACCCGCTCAGCCCACCGGGGGTCGCAGGCGGAGAACAACCGATGACGACCCTGACGAGAGAAGACAGCGCTTCCTTGAGCGGAACCGAGCAGCGGCTTCTCGTTGCAGACAGAAACGCAAGCTGTGGGTCAACTCTCTGGAGAAGAAGGCTGAGGAGCTCACATCCATCAACGTCTCGCTGTCGAACGAGGTGTCTCATCTACGAAACGAAGTTGCTCATCTAAAGCAGTTGCTGTTAGCTCATAAAGACTGCCCCGTCACCAACCTCCAGAAGAAAGCCGCCTACTTGGGGGAGGAACACATGAAAGAGACGTCTGAGCCCACGGGCTCCCCGGCACCGGTCATTCAGCACAGCTCTCTGGCCCACAGCCCCTCGTCCACAGTAGGGCCCAATGGCCTGAGCTCCCGTGCTGCGGCTGAGGCGGTGGCCATGTCGGTGCTGGCAGGGATGGGCAGCCAGCGAGGGGAGAGCGGTGGGCCATCGCACGTCATCATGGCGACACAGTCCCACCCGTCCAACAGATGA

Function

symbol description
atf7a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in axial chorda mesoderm and notochord. Orthologous to human ATF7 (activating transcription factor 7).
atf7 Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; mitogen-activated protein kinase binding activity; and transcription coactivator binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Located in nucleoplasm. Biomarker of colorectal cancer.

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09045 ATF7, ATFA; activating transcription factor 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10396483_10409163.mRNA True 1547 mRNA 0.57 11 10396483 10409163

Neighbor

gene id symbol gene type direction distance location
CI01000001_10335652_10355677 DIP2BB, DIP2B, DIP2BA coding downstream 40806 10335080 ~ 10355677 (-)
CI01000001_10259586_10315835 SCN8AA, SCN8A, SCN8AB coding downstream 80578 10258768 ~ 10315905 (-)
CI01000001_10200881_10219844 NA coding downstream 176106 10199787 ~ 10220377 (-)
CI01000001_10188558_10190603 NA coding downstream 204539 10188242 ~ 10191944 (-)
CI01000001_10153558_10173225 NA coding downstream 222869 10153215 ~ 10173614 (-)
CI01000001_10429436_10432248 ASB8 coding upstream 19782 10428945 ~ 10433559 (-)
CI01000001_10440005_10457383 LARP4AA coding upstream 29998 10439161 ~ 10457383 (-)
CI01000001_10460515_10473374 PFKMA coding upstream 50801 10459964 ~ 10473374 (-)
CI01000001_10475281_10484892 NA coding upstream 65823 10474986 ~ 10484892 (-)
CI01000001_10487487_10496560 PHF8 coding upstream 78062 10487225 ~ 10496560 (-)
G20062 NA non-coding downstream 18777 10370339 ~ 10377706 (-)
G20106 NA non-coding downstream 171106 10224882 ~ 10225377 (-)
G20089 NA non-coding downstream 275749 10120439 ~ 10120734 (-)
G20034 NA non-coding downstream 331031 10034267 ~ 10065452 (-)
G20033 NA non-coding downstream 363453 10032769 ~ 10033030 (-)
G20068 NA non-coding upstream 58472 10467635 ~ 10518846 (-)
G20152 NA non-coding upstream 121612 10530775 ~ 10531128 (-)
G20136 NA non-coding upstream 129864 10539027 ~ 10539850 (-)
CI01000001_10542497_10550979 IKZF4 non-coding upstream 131507 10540670 ~ 10550979 (-)
G20153 NA non-coding upstream 144845 10554008 ~ 10555307 (-)
CI01000001_09804494_09811219 NA other downstream 575587 9804429 ~ 9811219 (-)
G18223 NA other downstream 2467966 7926104 ~ 7928517 (-)
G18023 NA other downstream 2638963 7756501 ~ 7757520 (-)
G17911 NA other downstream 3143229 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 3459260 6931621 ~ 6937231 (-)
CI01000001_10862471_10864514 NA other upstream 453062 10862225 ~ 10865770 (-)
G20230 NA other upstream 612964 11022127 ~ 11028777 (-)
G20319 NA other upstream 701674 11110837 ~ 11114747 (-)
G20315 NA other upstream 710989 11116755 ~ 11120830 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022403 atf7a coding NC_007134.7 CM002907.2 27446929 ~ 27479558 (-)