RNA id: TCONS_00044217


Basic Information

Item Value
RNA id TCONS_00044217
length 1515
RNA type mRNA
GC content 0.54
exon number 4
gene id XLOC_022411
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27641471 ~ 27647769 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCCTCACACAAACAATTCAAGTCATTTCCAGTTCGTCGTTAAAGCAATCCCACAGGTGTTTTAATGTCCCGTCGAGAAAAGCGTTCGACGCAATGGAGTTACCCCACAGACAGTGTTTGGGACGAGTCCTGATTGTGACTGCTGCGCTTCTGTCACCTGCGTTCACGGTACTGGGCAATGACATCCTCGGCCTGAAGGTGGCAGGAGAGCCAGTGCTTACCCCCAACGCAGTGTGTTTACGACTGGCAGGCCTGACCAAAAAACAGATGCGTTTGTGTGTGCGCAGCCCTGATGTCACAGCCTCTGCTCTGCAGGGCATTCAGGTTGCTATTCACGAATGCCAGCACCAGCTCAGAGACCAGCGCTGGAACTGCTCCTCCCTGGAGAACCATGGCAAGTTGCCCCATCAGAGTGCCATTCTCAACAGGGGTTTTCGAGAGAGTGCCTTCTCGCTGTCGCTGCTGGCTGCAGGAGTCGTGCACTCGGTGGCTTCAGCCTGCAGCCTCGGTAAGTTGCGCGGATGTGGCTGTGAGGCTAAACGACGCCTGGATGACGATAAAATCCGTCTCAAGTTAACCCAGCTCCAGCTTCAGACCTTTCAGAGGAGCGGGGTGTCTTTAGCAGGTGCAGGAGAGAACACACCTGAGCTCAGCTCGCTCCACGGCAGCCTTCCTGCCAACCTGCACTCGTCCCACCCGATGAGTCTCCTCAAGCCCTTGCCGGATGAGGTCACAATGCTGCAGGACACCTGGGAGTGGGGAGGCTGCAGTCATGATATCCGTTTTGGTGTTCGCTTTTCTAGAGATTGGTTGGATTCCAGAGGATCTCCTCGTGATATACACGCTCGCATGAGGATTCATAATAACAGAGTGGGCAGACAGGTAGTTACTGACAATATGAGGAGAAAGTGCAAGTGCCATGGCACATCTGGCAGCTGCCAGTTCAAGACCTGCTGGTACGTTTCTCCTGAATTCCGGCTTGTGGGATCCCTGCTGCGGGAGAAATTTCTGACTGCCATCTTTATAAACTCTCAGAACAAAAACAACGGAGTGTTTAACTCTCGAACAGGTGGAAGCACTGGCTCAGATCCGCTCCGAGGCCAGCGGAGGCGCAGTATCTCACGTGAGTTAGTATACTTCGAGAAATCACCTGACTTCTGCGACCGCGAGCCTGCAGTGGATTCGCTGGGAACGCAGGGGCGGATCTGCAACAAAAGCAGCCCAGGGATGGACGGCTGTGGGTCGTTGTGCTGCGGCCGCGGACACAACATCCTGAAACAGGCTCGAAGTGAACGCTGCCACTGCCGCTTCCACTGGTGCTGCTATGTGCTCTGCGAGGAGTGCAAGGTCACAGAGTGGGTTAATGTGTGCAAGTGAGCAGCACACCTTCATCCAAATCTCCATTTGGTTTTTTGGACCGGGAGGCAACAACCTGTACCCTGTCAAATCGAATGCGACTGCAAGTGTGTTTTGCTCTCCCACAGTGTGTCTGTTTATCCGTTTCTCTCCTACTT

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005109 frizzled binding molecular_function
GO:0005125 cytokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-524 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within midbrain-hindbrain boundary development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system; neural plate; neural rod; and neural tube. Human ortholog(s) of this gene implicated in obesity; split hand-foot malformation 6; and tooth agenesis. Orthologous to human WNT10B (Wnt family member 10B).

Ensembl:

ensembl_id ENSDART00000059974

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044209 lncRNA downstream 82756 27555849 ~ 27558715 (-) True XLOC_022406
TCONS_00045021 lncRNA downstream 396236 27233879 ~ 27245235 (-) True XLOC_022399
TCONS_00044738 lncRNA downstream 442376 27191956 ~ 27199095 (-) True XLOC_022400
TCONS_00044194 lncRNA downstream 518348 27113460 ~ 27123123 (-) True XLOC_022398
TCONS_00045020 lncRNA downstream 674066 26961010 ~ 26967405 (-) False XLOC_022396
TCONS_00045022 lncRNA upstream 5127 27652896 ~ 27675394 (-) True XLOC_022412
TCONS_00044220 lncRNA upstream 40862 27688631 ~ 27695173 (-) False XLOC_022413
TCONS_00045024 lncRNA upstream 79526 27727295 ~ 27729454 (-) False XLOC_022415
TCONS_00045023 lncRNA upstream 79526 27727295 ~ 27729454 (-) True XLOC_022415
TCONS_00045025 lncRNA upstream 122712 27770481 ~ 27772372 (-) True XLOC_022416
TCONS_00044216 mRNA downstream 7741 27622020 ~ 27633730 (-) True XLOC_022410
TCONS_00044215 mRNA downstream 33214 27592347 ~ 27608257 (-) True XLOC_022409
TCONS_00044214 mRNA downstream 34432 27591366 ~ 27607039 (-) False XLOC_022409
TCONS_00044210 mRNA downstream 51642 27575539 ~ 27589829 (-) False XLOC_022407
TCONS_00044218 mRNA upstream 35245 27683014 ~ 27692717 (-) False XLOC_022413
TCONS_00044219 mRNA upstream 35245 27683014 ~ 27692724 (-) False XLOC_022413
TCONS_00044221 mRNA upstream 41491 27689260 ~ 27694960 (-) True XLOC_022413
TCONS_00044222 mRNA upstream 48925 27696694 ~ 27702561 (-) False XLOC_022414
TCONS_00044224 mRNA upstream 49287 27697056 ~ 27701361 (-) False XLOC_022414
TCONS_00044212 other downstream 61179 27580164 ~ 27580292 (-) True XLOC_022408
TCONS_00044197 other downstream 405817 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044183 other downstream 819703 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044178 other downstream 965701 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044148 other downstream 1848490 25789132 ~ 25792981 (-) False XLOC_022380
TCONS_00044226 other upstream 161299 27809068 ~ 27822778 (-) True XLOC_022418
TCONS_00044236 other upstream 542760 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044238 other upstream 553191 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044248 other upstream 1538083 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044249 other upstream 1538083 29185852 ~ 29257561 (-) False XLOC_022432

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_10513629_10520878.mRNA True 1694 mRNA 0.54 5 CI01000001 10513563 ~ 10521054 (-)