RNA id: TCONS_00044210


Basic Information

Item Value
RNA id TCONS_00044210
length 2994
RNA type mRNA
GC content 0.44
exon number 16
gene id XLOC_022407
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27575539 ~ 27589829 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGAAGTCAACATGTTAGTATTGCTTTGGCGAGCGTTTTCCCTGGGCCTGTGGAGGGAGAGACGCTTGAGCTAGAAAGTCCTGtagcttgaaaacaacattaaataagcTACAGTTATTGCTTCATTTCGGGTCTcctgACACTGAACCACTTTCGAGATGTCGTCCTCGAACCCTCTGCGAGCCCAGAACAGAAGCCAGCAGGATCAGACAGGGATGTTGAAGAGTCAGGATTTGAGGACTAAACCGAGTGCTTCCTCCACGAAAAGAGGATCTGAGAATCTGGATCCCAGTGCTTCTGCTGAAGCTGGAAAGGTTGTCAGTAAACTAAAAGGTGTCAGCAGACTTCCTGTCCTCGCAAAGTCTCTGCAACCAGCTCTAAGTGAACTTTCTCAAAATCCCAATCATAACAAATGGGAACAGAGGCCTCTTGCGGGTAAAGCTCAGAAAAAAAAGACCTGCACCAAACCTGTTCCTTTCAATTTGTCCCAATCACGGACACGCATTCAGAAGAGCACAGACGTTTCCCAAGGAAAACCACCCTTGATGCCTTCAGCTCGACTCACAACTGCGGAAAAATTGAGGGACTTAAATGCAGGTGCTAAAACTGATACACAGAGCCATAAAACTACCACACCGGGTGTCCTCAGAACTCAGGCAAACAAGTCACCACGACTGCAGTCTTTCAATAATGTGCACTATAAAAACTCCACAGATGGTCACGGATGCTACAATCAAACTGATTTAAGTTCACGCTTAGATTGCATTCATCTTTCACAATCAAAGCATCCTGAACACTCAAGCCATTTATCAAAGGCGTCACTCAGTAAAGTAGATGTTAATTCTGAAAATCAAGCACCAAAGGATAAGCACTGTTTTCAAACTGTTCCGTCAACCGCACAAAGCCATGTAAGCTATAAAGGATCTTCGCAGAATCTCTCATCAGCTGTGCACAATGTCTTCTCACGTGAGGGATTGAGTGCTGTTGGAGCTCAATGCATGATGCCACGTTTATCTACCTGCCCTTCTGGACCAGGAGCCTCTAATAATTTGCCTCAAAGAGTTTTGAAGAAGACCCATCATGGCGTTGATGCCACTGCAGACAAGGCTGGGCTGTTTTCCCCTGACCCATCAGCACTGCGTAGTATTCTACAGAGTGATGGAACTAGACTGGCGGAGCACACTGGAGCAACACCCAGAGTATCTACTTGTCCCACTGGCAGAGGAACCTCCATTTATTCTGCTCAAAGAGTGCCGGTAAAGAAGCCTCAAACAGAAGTTTCAGCAGCAGTAAAAGCTCCTGCAGGTAGTGCTGTGTCCTTCTCCCCTGACCCCGCAGCACTGCGTAGTATCCTGCTGAATGAAGGTGTGAGGGCTGGAGGAGCAACACCCAGCAGAGTTTCAGTCTGTCCCACCGGCAGAGGAACTTCCATTTATTCGGCCCAAAGGGTCCCggtgaagaaaaataaacaagaagTCATGGTGACGGCAGCAGTATCATCTCAGTGTGCTAATCGAACACCAGTGATGAAATGGACACCGCAGCGAGTTACAAACACTAAACCACAGTCAATGAGAAAGCTCTGCACCACCCAAAAGATGTCCAGTTTAAGGGACTCGCCGGGTTTTCTTGGATCTCACGACCCCAGCCCTGGTACCTTGATGTGCCAAGAGGGGGAAAAGGTTGTGCAAAGGTTATTTGAAGAGCAAGAGCAGATGGATGATGACCAGACAGACCAAAATGGCATTGCTTCCCAACAGTTGCTGAACAGTCACCAATCTGTTGAAGCCAAATCAACAGTTACAGAAAATTCAGACTCAAATCTTCATCACACTAAGAACGAAGGCAAGAAAACAGCTCAGCCATTCATACAAGCAGCACACAGAGGGTCCGTCATTGTTTTCTCATCAAGCCAAAGACTTGTATCAGAACACTCTCAAGATAGACTAAAGACCCTAGCTGCCAATCTACAACTCTGTGAAGATCGGCCTACATCTCATAATGCAGCCCAAAGCAATGGATCACAGATCAATCCCAGCGTAGACATGACCAAACAAAGCCAATCGAAAGCAGCTATAACAAAGTCTAGTGCTGTATCTGCTCTGCGGAGGCGTCAGACTCCTCTGGAGGAGATGTTTTTGGATGAGGAATGTGCTACCTACACCTCTCGCCTGCTGTCCTGCCCGCTGCAGCCCCGCTCTGGAAACCCAGTGGCCTCCACACTTCTGTTTCAAGACTCTACTTGTTTTTTACCCATTGGCCTGTCCTCTCCTGTACGTCTGAGCCCTGTCCTGTCCAGTGGTTCTATCAGAGCATAAAGCCAGATGTCCCACAACACATTGCACATTGAGTGGCGCCACAATGGCATCTGAATACATTTCCTAAGAGGATTTATATTGGGGTTTTTAAATGATAAGTAAAATAAGGTTCGTGGTTAACACCATtagatgttttgttttataatataaattacaaaCACACTCTAAAccaaagcatttttgttttgtttacttactAGAAACATACTTTAACGAAATATGCataatgtttttgtgtgtttaatttgtgttttaaagcaaAATGTTGTATTGCGAAGCATGTTTACCACAGTTATTTTACGGATAAATTGTTAAAACCTCAGGAAAGTCTCAGTGAACCCCAAAGCAAGTAATTATTTTGGGTTTTGACGTCATTCCTGCCTCCACCTCTTTATTTCTTCAATCAGTCAGTCTTTGTTTAGCCATGCAAGACTGTTtgaaacagtattgctgcttgcACTTTTGATAAGAAAAGTTGTACAGTTAGATAAACAATCTGTCGTCATTTACAAAAGCAAGGCTTGGATGGATAATTTTCAATGTTGAGCAGACGACAGACTGCAAGTCTGTACATAGAacacttttgttatttttacacTGAACTTGTCGCTGACAGGAAACACTGTGTGCTTGTCTATTGTGTAAAGTCTGTAATAAATCTATATATGAACAcat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000133721

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044209 lncRNA downstream 16824 27555849 ~ 27558715 (-) True XLOC_022406
TCONS_00045021 lncRNA downstream 330304 27233879 ~ 27245235 (-) True XLOC_022399
TCONS_00044738 lncRNA downstream 376444 27191956 ~ 27199095 (-) True XLOC_022400
TCONS_00044194 lncRNA downstream 452416 27113460 ~ 27123123 (-) True XLOC_022398
TCONS_00045020 lncRNA downstream 608134 26961010 ~ 26967405 (-) False XLOC_022396
TCONS_00045022 lncRNA upstream 63067 27652896 ~ 27675394 (-) True XLOC_022412
TCONS_00044220 lncRNA upstream 98802 27688631 ~ 27695173 (-) False XLOC_022413
TCONS_00045024 lncRNA upstream 137466 27727295 ~ 27729454 (-) False XLOC_022415
TCONS_00045023 lncRNA upstream 137466 27727295 ~ 27729454 (-) True XLOC_022415
TCONS_00045025 lncRNA upstream 180652 27770481 ~ 27772372 (-) True XLOC_022416
TCONS_00044208 mRNA downstream 3872 27553786 ~ 27571667 (-) False XLOC_022406
TCONS_00044206 mRNA downstream 27608 27511709 ~ 27547931 (-) False XLOC_022405
TCONS_00044207 mRNA downstream 53644 27516115 ~ 27521895 (-) True XLOC_022405
TCONS_00044205 mRNA downstream 69378 27499282 ~ 27506161 (-) True XLOC_022404
TCONS_00044203 mRNA downstream 69614 27497957 ~ 27505925 (-) False XLOC_022404
TCONS_00044214 mRNA upstream 1537 27591366 ~ 27607039 (-) False XLOC_022409
TCONS_00044215 mRNA upstream 2518 27592347 ~ 27608257 (-) True XLOC_022409
TCONS_00044216 mRNA upstream 32191 27622020 ~ 27633730 (-) True XLOC_022410
TCONS_00044217 mRNA upstream 51642 27641471 ~ 27647769 (-) True XLOC_022411
TCONS_00044218 mRNA upstream 93185 27683014 ~ 27692717 (-) False XLOC_022413
TCONS_00044197 other downstream 339885 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044183 other downstream 753771 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044178 other downstream 899769 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044148 other downstream 1782558 25789132 ~ 25792981 (-) False XLOC_022380
TCONS_00044132 other downstream 2649191 24880227 ~ 24926348 (-) True XLOC_022370
TCONS_00044226 other upstream 219239 27809068 ~ 27822778 (-) True XLOC_022418
TCONS_00044236 other upstream 600700 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044238 other upstream 611131 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044248 other upstream 1596023 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044249 other upstream 1596023 29185852 ~ 29257561 (-) False XLOC_022432

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_10475281_10484892.mRNA True 2510 mRNA 0.48 16 CI01000001 10474986 ~ 10484892 (-)