mrpl23 (mrpl23,LOC107675287,LOC107688558,LOC107553857,LOC107740558,LOC108439253,LOC107572752,LOC108275360)


Basic Information

Item Value
gene id mrpl23
gene name mrpl23,LOC107675287,LOC107688558,LOC107553857,LOC107740558,LOC108439253,LOC107572752,LOC108275360
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056723.1
NCBI id CM032092.1
chromosome length 17260642
location 14808781 ~ 14826680 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228282.1
AAATCgaggcttttattttgaccGTTTTCTCACGCGTGTCTGCGCAGTTTTCACAGCGGTCGGTTTTCTAGGACCTTGagcacatgaaaataaaataaaaacagcacgCGATTGTAGAAGTCAAGAACGTTTGCGGGGCATGGCGAAACGGATATTATATCCTTTATACCAGCTCGGTAACCCTCAGCTGAGGATATTCCGGCCCACCTTCAACCTGACGCTGGTCAGACCCGGCAAAGAACAGCCTCCGGATACAGTACAGTTTCGCGTTCCTATGGAAATGACCAAGTTTGATGTCAGAAATTATCTAGAGAAGATCTACAGTGTTCCTGTTGCAGCTGTACGCACAAGGATCCAATACTgTACAAACAAGAAACGAAACCACATGAACCAGCGAGTGAAGAGGCCGGATTATAAAGTAGCATATGTTCAACTGGCTCAGCAGCAGACCTTCCAGTTCCCAGATATCTTCCCTGAGAAGGATAAGATGCACGAGGAGGGCTCTTTTGAGATGATGCAGGAGAAGTTCATGGAGGACGAGCGTCAGAGGCAGAAATCAGATCCCAGAAGAGGAGGAGTTACTGAATGGTTTGGCCTGTAGACAGACAAGTGTTGAATGAAGAATGACTTCAGAGAGGCAACAGCTGAATGAAGAATGTGGTGTATTGTAGATTATGTATTTGTGCAGGAAGAGCCATTTACAGTGATCTGACCAGTGTCCATAGAGGGCCGTTTGCAGTGATCTGATCTGACTCGATGGAAAGACAGACTGCCTGAGAGACGGCTTGGAAATCCATTACTCCAAAAGAATCATGTGCTCTGTCAAAGAACACTGATGTCTACATAGCATCTGCAGTGTCATGAAAGTCTTTCAGGTTATGTTGTCCTCCCACAGGTCTCAGAATCCTTCTTATGGTCCTCCTTGCGAAAATCTTGAGCATACACGTTTCCTTTTCTTTAAAGTCCCTCCAAAATGTTTTCCTTTCCCTCTTGCTGGAAGATTCAAGATGGTTTTCTTGAACTATTTGCAGTAAAATGGTCAATCTAATGAAGTGACTCTCCAGTTCTTCATGCAAAATCATGCTCTTAATGTTCCTGAAAACTCCAAAAACTGCATACTTCAATTCCAATAAAACAGTACAGAATga

Function

symbol description
mrpl23 Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL23 (mitochondrial ribosomal protein L23).

NR:

description
39S ribosomal protein L23, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02892 RP-L23, MRPL23, rplW; large subunit ribosomal protein L23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228282.1 True 1148 mRNA 0.44 5 14808781 14826680

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-19e1.3 LOC107740555,LOC107553860,LOC107688560,LOC107707557,LOC107675285,LOC107572877 coding downstream 98062 14692838 ~ 14710719 (-)
tmem86a tmem86a,LOC107707555,LOC107675270,LOC107688565,LOC107709947 coding downstream 130137 14668409 ~ 14678644 (-)
b4galnt4a b4galnt4a,LOC107675269,LOC107688567,LOC107709930,LOC107558306,LOC107562842,LOC107707534 coding downstream 151420 14546349 ~ 14657361 (-)
abtb2b abtb2,abtb2b,LOC107675288,LOC107688574,LOC107558307 coding downstream 266024 14502446 ~ 14542757 (-)
ldha ldha,LOC107707550,LOC107562837,LOC107558315,LOC107675667 coding downstream 502430 14300230 ~ 14306351 (-)
cpt1ab cpt1ab,LOC107675280,LOC107553855,LOC107688557 coding upstream 43010 14869690 ~ 14884722 (-)
LOC122331299 ptprd,LOC107564123 coding upstream 123110 14949790 ~ 14952896 (-)
ptprjb.2 LOC107744187,LOC107688568 coding upstream 126775 14953455 ~ 15022993 (-)
LOC122330579 osbpl5,LOC107675277,LOC107549292,LOC107717812,LOC107740565,LOC107688553,LOC108439258 coding upstream 157826 14984506 ~ 15017502 (-)
LOC122330435 LOC107553844 coding upstream 226958 15053638 ~ 15091698 (-)
G169640 NA non-coding downstream 19743 14788814 ~ 14789038 (-)
G169616 LOC107675272,LOC107707559,LOC107572879,LOC107688559,LOC107740557 non-coding downstream 67284 14667912 ~ 14741497 (-)
G169624 NA non-coding downstream 118999 14688823 ~ 14689782 (-)
G169619 spty2d1,LOC107675289 non-coding downstream 122960 14682287 ~ 14685821 (-)
G169577 NA non-coding downstream 149618 14658937 ~ 14659163 (-)
G169649 NA non-coding upstream 32624 14859304 ~ 14859782 (-)
G169650 NA non-coding upstream 34005 14860685 ~ 14864041 (-)
G169781 NA non-coding upstream 78557 14905237 ~ 14905469 (-)
G169783 NA non-coding upstream 91498 14918178 ~ 14923283 (-)
G169804 NA non-coding upstream 309619 15136299 ~ 15456202 (-)
G169631 NA other downstream 53954 14754174 ~ 14754827 (-)
G169622 NA other downstream 120192 14687446 ~ 14688589 (-)
LOC122331294 NA other downstream 720856 14083708 ~ 14087925 (-)
LOC122330425 NA other downstream 815932 13992252 ~ 13992849 (-)
LOC122331290 NA other downstream 818868 13989336 ~ 13989913 (-)
LOC122330438 LOC107758747,LOC107744187,LOC107549291 other upstream 202421 15029101 ~ 15052924 (-)
G169808 NA other upstream 422275 15248955 ~ 15583635 (-)
LOC122331105 abcc8,LOC107675473 other upstream 675941 15502621 ~ 15550803 (-)
ush1c ush1c,LOC107675293,LOC107549256,LOC107742065,LOC107675444 other upstream 757871 15584551 ~ 15602848 (-)
syt8 LOC107595270,LOC107742052,LOC107549275,LOC107758745,LOC107675261,LOC108428822,LOC103035847 other upstream 915849 15742529 ~ 15751580 (-)

Expression


Co-expression Network