LOC122331582 (LOC107571813,LOC107661922,LOC107758411,LOC107758408)


Basic Information

Item Value
gene id LOC122331582
gene name LOC107571813,LOC107661922,LOC107758411,LOC107758408
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 4803858 ~ 4805435 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229130.1
ACGAGCTTCTGAAACTAGAGCTGAGTTCCTGCCGGCTCTCACAGTCTTTACTCACAGCGCTGTCTGGAAAGATGGAGCTGTATCTGGCCATCCTCACCctcgctgtctgtctctcagccGATGCTCAGTTGATACACAAAGATTTCAAAATTAACGGATGTACGGACACAGAGAAAGAATCTCTGTACGGATCTGATGGAGAAGAGATATGGCATGCTGACTTTATTCAGAACGTGGGAGTCAACACATTACCAGATTTCGCAGATCCTTTGCGCTTTCCAGGATTTTATGAATTAAGCATTGCAGAACAAGAAACTTGCGAGCACAACTTAGCTGTGTGCATTGAAGTGTACGAGAACCCGCCAGAGGAAATGGACCCCCCCGAGACGTCCGTCTATACGAAGAATGAGGTTCAGCTGGGTGTTAAAAACTCCCTCGTCTGTCACGTCACAGGCTTCTTTCCTCCGCCTGTCAACATGTCGTGGACTAAGAACAATGTCATTGTGACTGAAGGGGTGAGTGTGAGTCAGTACCGACCGAGGAGCGATGGGACCTTCCACATCTTCTCCTCTCTGGACATTGTTCCTGAAGAGAAAGACATCTACAGCTGTACGGTGGACCACAGGGCCCTCCAGGGACAAGCGCAGACCAAAATATGGGGTGTCCCGGAGACGACGGCCGTCCCGTCCGGACTGGGTCCGGCGGTCTTCTGTGGAGCGGGCTTCACTCTGGCGCTGCTGGGAGTAGCTACAGGGATCTTCTTCTTCGTGAAAGGAGCTGCGACTGATGACCATGAcgcagcaaaaaaagaaaaacgtttcATGCAGTGGACCTACCAATAAAGACGGTCAGCGATGGACAGCACTGCTGGTGTTGAAGATCGATAGATACAACAGATTACGAcgaactgcaaaaaaaagattagtATTACCTGATGATCTCTAGTCGGTTGTAATAATTGAAGAGTTTGCCTGTGATTTGATCTGTAATTTGTCAAGTAAATTACCTACCATAACA

Function

NR:

description
PREDICTED: H-2 class II histocompatibility antigen, A-U alpha chain-like

GO:

id name namespace
GO:0019882 antigen processing and presentation biological_process
GO:0044425 obsolete membrane part cellular_component

KEGG:

id description
K06752 MHC2; MHC class II antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229130.1 True 1017 mRNA 0.49 4 4803858 4805435

Neighbor

gene id symbol gene type direction distance location
LOC122331666 NA coding upstream 21645 4781179 ~ 4782213 (+)
LOC122331589 NA coding upstream 26674 4775383 ~ 4777184 (+)
LOC122331521 LOC107573535,LOC107571679,LOC107710299,LOC107574960 coding upstream 38370 4753391 ~ 4765488 (+)
LOC122331510 NA coding upstream 324325 4466079 ~ 4479533 (+)
LOC122331662 NA coding upstream 339427 4461252 ~ 4464431 (+)
LOC122331584 LOC107661924,LOC107571811,LOC107758410,LOC107571812 coding downstream 2416 4807851 ~ 4811924 (+)
LOC122331573 NA coding downstream 39710 4845145 ~ 4846589 (+)
LOC122331699 LOC107573535,LOC107571679,LOC107574960,LOC107710299 coding downstream 138162 4943597 ~ 4961071 (+)
LOC122331667 NA coding downstream 203607 5009042 ~ 5009516 (+)
LOC122331702 NA coding downstream 250801 5056236 ~ 5059175 (+)
G171149 NA non-coding upstream 100361 4702419 ~ 4703497 (+)
G171092 NA non-coding upstream 187611 4615826 ~ 4616247 (+)
G171087 NA non-coding upstream 192444 4611152 ~ 4611414 (+)
G171073 NA non-coding upstream 197165 4598749 ~ 4606693 (+)
G171075 NA non-coding upstream 208285 4580791 ~ 4595573 (+)
LOC122331696 NA non-coding downstream 76926 4882361 ~ 4885199 (+)
G171208 NA non-coding downstream 181913 4987348 ~ 4992060 (+)
LOC122331705 NA non-coding downstream 200192 5005627 ~ 5008090 (+)
G171221 NA non-coding downstream 277136 5082571 ~ 5082844 (+)
G171281 NA non-coding downstream 350569 5156004 ~ 5156723 (+)
proza proza,LOC107573529,LOC107732003,LOC107576663,LOC107680190,LOC108438900 other upstream 615605 4182175 ~ 4188253 (+)
G170961 NA other upstream 634828 4168634 ~ 4169030 (+)
G170953 NA other upstream 698728 4104474 ~ 4105130 (+)
G170923 NA other upstream 829056 3973639 ~ 3974802 (+)
LOC122331563 NA other upstream 1407035 3122302 ~ 3396823 (+)
G171269 mgat5b,LOC107562046,LOC107743022,LOC108274344 other downstream 339719 5145154 ~ 5155135 (+)
LOC122331671 NA other downstream 355038 5160473 ~ 5168105 (+)

Expression


Co-expression Network