LOC122333285


Basic Information

Item Value
gene id LOC122333285
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047901.1
NCBI id JAEQBD010000246.1
chromosome length 542128
location 423599 ~ 481509 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU265499
ctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtggatGAGTGTGGACAATAGTCTCAGCAGTGGCCCCTGATTGCCTCTTTTCACATGTTAATGAGCATCTCTGCGTTCCTCCTCTTTCTCAAATCTCCACAAATTATACAGCAAACACAGAAAAGGAAAATCCTACggctctttttttcattcagcaaaCTGACATGTAAATGCGAGTGTAAGTGTTGTCCTCCGCCGCTCTGATCGGCAGCTAATTGTAGCCGTCAATTGTATAAGATGCTCTTTTACTTCAACACAAGCCCGGATCAAACACAATCAACTCTCCTGCCtgtttaagagagagagagagagagatgttcgTTGTCACGGCGATGACGGCGTTTATTCGCATCTCAcgtctgaatataaatatttgttgatTTGCTCATTCTGCGTctgaaacacagacagacacctgAGTGTGTGaacatatacacagacacacacagttcaAAACTTTATTCCCTTTATAACTGATAGTACTCCATACAATGTTAAAGTCAcaaatatttactcaaaaatgcATTCGGTATTTATGCAGAtatatgaagtgtttttttgctgttgaaTGACTGAGGAGTGATCGGCCAATGGGCATCCAGGAGCGGAAGGACCCGTTTTTATAAGgcactttaatattatttcctAATCACACAAGACCACATCGGACATTGCATTTGACAGCGTGTTATTTAATATGCAGCAGCGGATTTTAAAATAGAACGAGTAAAATGCGAACGCACCGACGCAAACACGCTTCCACAAGAGGGCCAAATCCTGCAGGAGAAAGTCACGTTTTATTTCATAGGataaattaaatttcacacCCCTGCGAAGTTTACGGAGCACATAGCGGCGGATTTTTTACAAGATTCATATGCAAATGTGCAACGAGATTAGAGATACAACAATTATTCCAGTTCgtgataaattattcatttaacaaccGTCAATTATTAATTCCGCAGAAACAATAAGCCGCGTTTCTGTAGGCAGAGTTTCCTTTTTTAACGGACCTTCACCTTTGAATGAATCCCACTGAACGTTTCCCACCTCCTCCTCTGTCTCAAAAAGCCGGAGCAtcaaaatagttaaaaaatatgTCGCCGCGCCGCTACTTTTACCTCACCGGAGACCTGACCTCTTTACCGAGAGACGCTCGGAATCATCGCTCTCTCCGCCGAGCGTCTCTCGTTTGATGTGTGCAAATGAAGAGGGCCGGCTAATAATCAGATCATTGCTGTTCAGAGTCCTTCCCCTGCACCGAACAAGTGCTACATGTGAAAATCAATAGCTATTTGATGCATACGGCGTCTGTAGCTGCGCAGTCGGCATCCCAGCGTGCCGTTATATACAGTAGAGCGAAGCCGCCTGCGGCTACGGCACAACAACTCATTTCATATGTTTGAGAGACTTTGAAATCGCTCTCTCTGCTAACTCTGCACTATAATTGTCCGTCAGTCTGCCGTGGCCTTCTTTTGTCTGGCCGTGTGAGATACGCTCGCCCCGTACAGCTGTCATTCACATTAAAATGCGCCTGTGAATGGAACAGGTTTGTTGggtaaatgcataattaataagtACAGATGAGAAATCGCTGCCGCATGTAATGCATGTGCACGCATGCTGTATTTGCACCGAGGTGCGTCTGTGAACGGTCGGACGGGCTTTTTGGCTGCCGACGTACACGCACACATGTGATAATTATGCTAATGAAACACACGCCTGTAACTCCGGTGCCGTTGTGTGCGGCGCAGCGCGCTTTataatgactgctgaaattAACTAGCAACGCAGGACACGGACCCCAGCGGTTCGTACGGGATAATGACATTGGTActgaagaaggagaagaagaaaaagattcaCTCGGAAATTGGCTAATAAATGATTTTGGAGAAATAGCAAATAATGCACCGAATTGCACCTAAGcgcaaaaatgtaaacacttcgatgatctttaatattttttttacacggCACGTTTAActtgtgttttaaatttaaaaccgACGCAGTTAATGTTACATGTTTTCCATGCATTTACGTCGTATTTTGTTTCCCAGTTTTACGGGGATTTGCTTGAATGACACGTTTTTCATTTACGGTCTGGAGTGCATTATCGTAAGTTGAGAAAACGGTCCAGAAAGATCCTCTGGTAGCGAGCTGAGTGTGTGACAGGTCAGGAACGAAGGAGAGGGTGTAACGGGAGCGAGCGCAGAGAGGGGGCGTCTGTCTCCTCCGttaaatgaacacattcatGAACCCAGAGGGTCGCTGGATGAGCGTTTGCCTGTCTCACACGATACTCAACAACGTGCAAAATACTTGCCTATAAACAGACAACATGCGTGCAGAAAggatagagagacagacagacagatagacagatagatagatagatagatagatagatagatagatagatagatagatagattataaTTGTCAAAAGAGCAAGCTTTGTGCAATGGCACACAAATAAGTGGATTTTGCTTTtagtaaaaccaaaaaatatctatctatctatatatctatgtatataatttaataggACTGAATCAACCTGATTATATCAACCTGGTTAAATCAGATTAACTGATTAATTATTGTCTGACTGATTTGTGTCAGTCACCCTGCAGGGATTTACAGCAGCTCTGTGTGAttcaatataaacaatataaaccattcaaataatacaacatctcatattataatataaaagacTGATAACAATGGCaattcaatttttattattattacttaataattAGCATGTTATTACTGCTTAATAATTCTCACGTTATTATTACTTGATGATTTGAAGGTTATTATTGCTTGATAATttagtatttgttatttttaaatgcacaaatacatACCTGACTGATTACAGATCGCAGGAGTCTGATGCTGAACAAAAGCATCAATCAGCGCAGATGCCAGTAGATTGATGTCTTCATTATCCTCACAAATACTGAAAGAACAGAAAGTCTGTTCACATAAAGCGCTGTCGCCCTCTGAAGACTCCAGCACTAAAGCGTAAAACACAGTAGAAGACAAATAACAATAACGGTGAAAGaatgcagagagagacagagagaaagagacagagagagagagacagagagagagagagctcattCACGCCCTTAAATGTGTCGGAATCCCTCTGAAATCTCCTCGAGAAAGCagttcattctttcattttggATCGAGAATTGcgaaaaaaataatgcatgaaacGCACTAAACGCCGCAGGTTTATAAAAAGGCGCTCTTACCTGCGCACCTGCAGACTCACCTGTCACAGGAGAGCGCGCGCTTCCCGCGTCTCCTCCGAGCGAACACCTTTCCTCCTCAAATTCAGCGCTTCTCCTCCTCATCAcattcgtctttttttttttttttttggactgcaCCCTCCTTTATTTCTCCTACAGCCGTGTTTGTCGCCCGCGCCGAGGAGAGGGAGCGTAACCGTTCCTGAACTTTCTTCAAACGTTATTCGCGTCTCCGCTATAAAGGTGCCCGacgctctctgtgtgtgtgtgtgtgtgtgcgtgcgcgcgcgctcataaaacacacacgttTGGCTCTATTATCCCTCCCTGTGCTGATAGGTGgcgtgtgtttctctctctctctcgaaaAGAAAGGAGGAAAACAGTGTCATTCGAGGCGTGTGAGCGCGTCAGTCCGAGCGCAGGTTTGAGTCCTGGAGTGTGTGAGAGGATCAGTCAGGAATAACGCGCCTCTGTTTCTCAGGCTTTATTCTGGACCCAGACACTataacacacacaacacacactcctGCAGCCGAGACCACAAGAGGGAGCGGTCCACCCTGCTGCTGTGTTTGCTCGGGTCTGAGTCCATGCAAACTGCCATCTGATCCACGTTTATCAATGCGGGAGCTGATCATGGCGGATGGCCCCCGGTGTAAGAGGCGAAAACAAGCCAACCCGCGGAGGAAAAACGCAGTGTTGGACTTTGAGAACGTTGTAGAAACTGATCAGAGACGGAATAAAGAGGATAGGCTTCTG
>XR_006248613.1
GAGGAAAACAGTGTCATTCGAGGCGTGTGAGCGCGTCAGTCCGAGCGCAGGTTTGAGTCCTGGAGTGTGTGAGAGGATCAGTCAGGAATAACGCGCCTCTGTTTCTCAGGCTTTATTCTGGACCCAGACACTataacacacacaacacacactcctGCAGCCGAGACCACAAGAGGGAGCGGTCCACCCTGCTGCTGTGTTTGCTCGGGTCTGAGTCCATGCAAACTGCCATCTGATCCACGTTTATCAATGCGGGAGCTGATCATGGCGGATGGCCCCCGGTGTAAGAGGCGAAAACAAGCCAACCCGCGGAGGAAAAACGCAGCAGTTTTTTCTGGCCTGCTTGCTGGAGTTGAACTGAAGCGTGTCAGACGCGGAGCTGAGAGACGGAGGTTTTGGAGGAGAATGGAGGGCCGTCGGCTCACCTGTCAGAGCGAGGCGTGTTTGATGGCTTTACTGGAGGATGATGGGAACGGGTTTAACACGCTACGCGCTCCAGACTGATGGAGACCGGACCGCTTCGCCTGCGGGGTCGTcgtagttaactaaaactaaaatcagaaGACCTAAACCAAATGGCCTCGACCTTAGtccaaaccataaaaaaaactaaataaccaaaactgaaacacaaattaatgcatttatttgaatgcattttaggtttaaaaataattacaaaaatgcccaaaaaaattaaaaaggtttaaattaaaattaaattataatgaaaacgCGCAGTGCATGACATAGAATGCAGAAAATCTTAAAGTCAATTAATtttataactaaaactaaaactataaaaatatatttcttaaaaaactgCTGTTACACGTACTAAATAATGCTATTTATAGACATAAAATGGCAATCAGAGTCCAAATGAACTGATTCAATAAAACGCTGTGTGCTTCACGTAGCTTTTCTGcttatttgctgtatttataatcgcatataaaaaaacatggttaattCGATTTTATCAATATTGGGCGCCAGAAAACATTTGATCTAAAGATGTCAAATCTAGtattcacattatatatatatatatatatatatatataaactgactGCTGAATAACGACGAGTCAGTAATGTACTGTAGTTACTCCCGCATTAGCTCATATTATGCTTTGTGATTTTCTTTGGTATTAATTATAGATGCGATTTGAAGAAGTCCAAGCGAACGCTCCGAGATCAGACTCGATCGGATCCCCTCGGGAACGCCACCGCTGTTTAACCGTGTGACATGTTGTCATATTGGAGAGCggcgaaagaaagaaagaaatca
>XR_006248614.1
AAAACAGTGTCATTCGAGGCGTGTGAGCGCGTCAGTCCGAGCGCAGGTTTGAGTCCTGGAGTGTGTGAGAGGATCAGTCAGGAATAACGCGCCTCTGTTTCTCAGGCTTTATTCTGGACCCAGACACTataacacacacaacacacactcctGCAGCCGAGACCACAAGAGGGAGCGGTCCACCCTGCTGCTGTGTTTGCTCGGGTCTGAGTCCATGCAAACTGCCATCTGATCCACGTTTATCAATGCGGGAGCTGATCATGGCGGATGGCCCCCGGTGTAAGAGGCGAAAACAAGCCAACCCGCGGAGGAAAAACGCAGCAGTGTTGGACTTTGAGAACGTTGTAGAAACTGATCAGAGACGGAA

Function

GO:

id name namespace
GO:0090243 fibroblast growth factor receptor signaling pathway involved in somitogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001755 neural crest cell migration biological_process
GO:0035622 intrahepatic bile duct development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0014029 neural crest formation biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060030 dorsal convergence biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265499 True 4144 lncRNA 0.44 3 423599 481509
XR_006248613.1 False 1297 lncRNA 0.42 4 427356 454295
XR_006248614.1 False 367 lncRNA 0.54 4 427360 481490

Neighbor

gene id symbol gene type direction distance location
LOC122333286 NA coding upstream 236097 184584 ~ 187502 (+)
orc4 orc4,LOC107705817 coding upstream 289564 128383 ~ 134035 (+)
ntan1 ntan1,LOC107666719 coding upstream 296047 122933 ~ 127552 (+)
txnrd3 txnrd1,txnrd3,LOC107705821,LOC107666707,LOC107705897,LOC100702976 coding upstream 303175 107692 ~ 120424 (+)
LOC122333289 LOC107666675,LOC107582334 coding upstream 332277 84959 ~ 91322 (+)
G178978 NA non-coding upstream 3469 356628 ~ 420130 (+)
G178957 NA non-coding upstream 210751 212442 ~ 212848 (+)
G178956 NA non-coding upstream 229059 194282 ~ 194540 (+)
G178948 NA non-coding upstream 249953 173340 ~ 173646 (+)
G178947 NA non-coding upstream 252037 169802 ~ 171562 (+)
G178989 zeb2,zeb2b,LOC107712039,LOC107684631,LOC107556205,LOC107558525 non-coding downstream 7010 488519 ~ 527537 (+)

Expression


Co-expression Network