orc4 (orc4,LOC107705817)


Basic Information

Item Value
gene id orc4
gene name orc4,LOC107705817
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047901.1
NCBI id JAEQBD010000246.1
chromosome length 542128
location 128383 ~ 134035 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230823.1
GCTGCGTTCCGGAAGTAGCTGGCTCGTGGCGCGAAATCGCAGCACGTACGCTGCAGGTGAAGATGAGCAAACGACGATCAGCCGCTCTCACCGAAGCCCAGGCCGTGTCTCTGgctcAGAAGCTCCTGCGGGAGAGACTGTGTCATCAGAAGCTGCCGGATCGACCCGTGGCTCTGGACTCACAGTACAAgcaCCTGCTGGAGCTGCTGAGACGGACAGCCCTTCATGGAGAAAGTAACTCAGTCCTCATTGTTGGTCCGCGAGGATCCGGCAAAACTATGCTGCTGGGTTGTGTTCTCCGAGAGCTCATGAGCCTGAAGGACGTGCAGAAGAACGTTCTCCTCGTGGAGCTGAACGGTCTTCTGCAGACAGACGACAAGATCGCGCTGAAAGAAATCACTCGGCAGCTGCACCTGGAGAACGTCGTAGGAGACAAAGTGTTTGGGAGCTTTGCAGAGAATCTGTCTTTTCTCTTGGAAGCTCTCAAGAAAGGTGATAGGAGCAGCAGTCGTCCGGTGCTGTTCGTGTTGGATGAGTTCGATCTGTTCGCTCATCATAAGAACCAGACGCTGCTGTATAATCTGCTGGACGTGTCTCAGTCTGCGCAGACGCCCGTGGCTGTGGTGGGACTCACCTGTCGACTGgaCGTGCTGGAGCTGCTGGAGAAGCGAGTGAAGTCTCGTTTCTCTCACAGACAGATTCATCTGTTCAGCTCGCTCTCGTTCGGTCAGTACGTGGACGCGGTTCGCTCTCAGCTCAGTTTACCTCCGGATTTCCCAGATCCCACGTTCTCCTCCGAGTGGAACCACAGCGTCACGAAATTGTGTGAAGAGAAGTCGATTGAGGAGGTTTTGAAGAGACACTTCAACGGCAGTAAAGATTTCCGCTCGCTGCATTCACTGCTGtttCTGGCTGTCAGTCGAGCGTCGGTCTCTCATGCGACTCTGCGTGAGGCTGATCTTCTAGAGGCCAGTCGCTTGATTTCCGCTGATTCGAAAGCAAACGTCCTTCACGGTCTGTCTATTCTTGAGCTGTGTTTGATCATTGCCATGAAGCATCTGAATGACACTTACGACGGAGAGCCCTTCAATTTCCAGATGGTCCATAATGAGTTTAAGAAGTTTATTCAGAGGAAGTCTCACTCCATCCATAAGTTTGAGAAGCCCGTGGTGATGAAGgcgTTTGAACACCTCCTGCAGCTGGAGCTGGTGCGTCCGGTGGACTCTGGTGTGTGTAAAGTTCAGCGTGAGTATCAGCTGATGCGGCTGATGCTGGAGCACGGTCAGGTGATGGAGGCGCTGCAGAGATACCCACAATGCCCCACAGACGTCAAACAGTGGGCCCTCTCAGCCTTCGCCTGAACATGCTGAAATAggcatttgtatgtatatatagttttttttttttggtttgcagtaaaaatgtaacaatttctAACGTCTTTGCAGTAATACTGTACAACATACTTCAGGAGCCAAATGTCAATTTAAGACAAAGTAGTTTTGAGTAGTTGACTTGACAGTGTCATGGAAGCCTGTTTCGGCCACGggataaaacatttagtttatttctttataaaaataaaaaggtagaACTGT
>XM_043230824.1
TGCTGCGTTCCGGAAGTAGCTGGCTCGTGGCGCGAAATCGCAGCACGTACGCTGGTGAAGATGAGCAAACGACGATCAGCCGCTCTCACCGAAGCCCAGGCCGTGTCTCTGgctcAGAAGCTCCTGCGGGAGAGACTGTGTCATCAGAAGCTGCCGGATCGACCCGTGGCTCTGGACTCACAGTACAAgcaCCTGCTGGAGCTGCTGAGACGGACAGCCCTTCATGGAGAAAGTAACTCAGTCCTCATTGTTGGTCCGCGAGGATCCGGCAAAACTATGCTGCTGGGTTGTGTTCTCCGAGAGCTCATGAGCCTGAAGGACGTGCAGAAGAACGTTCTCCTCGTGGAGCTGAACGGTCTTCTGCAGACAGACGACAAGATCGCGCTGAAAGAAATCACTCGGCAGCTGCACCTGGAGAACGTCGTAGGAGACAAAGTGTTTGGGAGCTTTGCAGAGAATCTGTCTTTTCTCTTGGAAGCTCTCAAGAAAGGTGATAGGAGCAGCAGTCGTCCGGTGCTGTTCGTGTTGGATGAGTTCGATCTGTTCGCTCATCATAAGAACCAGACGCTGCTGTATAATCTGCTGGACGTGTCTCAGTCTGCGCAGACGCCCGTGGCTGTGGTGGGACTCACCTGTCGACTGgaCGTGCTGGAGCTGCTGGAGAAGCGAGTGAAGTCTCGTTTCTCTCACAGACAGATTCATCTGTTCAGCTCGCTCTCGTTCGGTCAGTACGTGGACGCGGTTCGCTCTCAGCTCAGTTTACCTCCGGATTTCCCAGATCCCACGTTCTCCTCCGAGTGGAACCACAGCGTCACGAAATTGTGTGAAGAGAAGTCGATTGAGGAGGTTTTGAAGAGACACTTCAACGGCAGTAAAGATTTCCGCTCGCTGCATTCACTGCTGtttCTGGCTGTCAGTCGAGCGTCGGTCTCTCATGCGACTCTGCGTGAGGCTGATCTTCTAGAGGCCAGTCGCTTGATTTCCGCTGATTCGAAAGCAAACGTCCTTCACGGTCTGTCTATTCTTGAGCTGTGTTTGATCATTGCCATGAAGCATCTGAATGACACTTACGACGGAGAGCCCTTCAATTTCCAGATGGTCCATAATGAGTTTAAGAAGTTTATTCAGAGGAAGTCTCACTCCATCCATAAGTTTGAGAAGCCCGTGGTGATGAAGgcgTTTGAACACCTCCTGCAGCTGGAGCTGGTGCGTCCGGTGGACTCTGGTGTGTGTAAAGTTCAGCGTGAGTATCAGCTGATGCGGCTGATGCTGGAGCACGGTCAGGTGATGGAGGCGCTGCAGAGATACCCACAATGCCCCACAGACGTCAAACAGTGGGCCCTCTCAGCCTTCGCCTGAACATGCTGAAATAggcatttgtatgtatatatagttttttttttttggtttgcagtaaaaatgtaacaatttctAACGTCTTTGCAGTAATACTGTACAACATACTTCAGGAGCCAAATGTCAATTTAAGACAAAGTAGTTTTGAGTAGTTGACTTGACAGTGTCATGGAAGCCTGTTTCGGCCACGggataaaacatttagtttatttctttataaaaataaaaaggtagaACTGT

Function

symbol description
orc4 Predicted to enable DNA replication origin binding activity. Acts upstream of or within cilium assembly. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 2. Orthologous to human ORC4 (origin recognition complex subunit 4).

NR:

description
PREDICTED: origin recognition complex subunit 4

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0000808 origin recognition complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02606 ORC4; origin recognition complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230823.1 True 1598 mRNA 0.51 14 128384 134035
XM_043230824.1 False 1596 mRNA 0.50 14 128383 134035

Neighbor

gene id symbol gene type direction distance location
ntan1 ntan1,LOC107666719 coding upstream 831 122933 ~ 127552 (+)
txnrd3 txnrd1,txnrd3,LOC107705821,LOC107666707,LOC107705897,LOC100702976 coding upstream 7959 107692 ~ 120424 (+)
LOC122333289 LOC107666675,LOC107582334 coding upstream 37061 84959 ~ 91322 (+)
LOC122333286 NA coding downstream 50549 184584 ~ 187502 (+)
G178908 LOC107666675,LOC107582334 non-coding upstream 37066 42797 ~ 91317 (+)
LOC122333275 NA non-coding upstream 83565 42549 ~ 44818 (+)
LOC122333283 NA non-coding upstream 87507 20680 ~ 40876 (+)
G178938 LOC107582301,LOC107705816,LOC107666699,LOC107572302,LOC107705898,LOC107691069 non-coding downstream 9167 143202 ~ 143941 (+)
G178946 NA non-coding downstream 34108 168143 ~ 168360 (+)
G178947 NA non-coding downstream 35767 169802 ~ 171562 (+)
G178948 NA non-coding downstream 39305 173340 ~ 173646 (+)
G178956 NA non-coding downstream 60247 194282 ~ 194540 (+)

Expression


Co-expression Network