CI01000004_05936410_05942402


Basic Information

Item Value
gene id CI01000004_05936410_05942402
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5935178 ~ 5942505 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05936410_05942402.mRNA
ATATAAAAGAGACAGAAGTGCCCAAGGACAGAACAAGGTGAGTTCGCAAAGACGCTTCTTTTCGGTAAGTCTTTCTCTGCACACACTCAAAGAAATAATTCTCATAATGTTCACTTTATTTTCAAACAATTCGTTTTGATTTAACACCATGTATCAGGTTTCTCATTCAAACATGATTTCTTCATGTTAAATTGACTTGAAATGGTAACTTTTTATGTTTTTGAAAGAAGTTACTTATGCTCACTAAGGCTGCATTTATTTAATAAAAAAATACGGTAAAAACAGTAATATTGTAAAATATTATTAGAATTTAAAATAACTGTTTTCTACGTGAAAATATTTTAAAACGTAATTTATTCCTGATGAATTTTCAGCATCATTACTCCAGTCTTCACTGTCACATGACCCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTTGAGAAATGCTTATTACTGTATATTATTATTATTTATTATATAAAATGTTGAAAACCGTTTTTGCTACTTAACATTTTAGTGGAAACAATAATATTAATCAAACATTTGGTAAGATTAAAAAAAGAGAGAAATTAATATTATTCATCAAGGATGCATTAAATTGATCAAAAGTGCCAGTAAAGACATGTATAATGTTACAAAAGGTTTCTATTTAATAAATGCTTTAATAAATTTACTAAATAATTGTAATAAATGCTGTTCATTGAACTTTTTATTCATCAAAGAATCACTATTTCCACAAAAATGTTAATCAGCACAACTGTTTTCAGCATTGATAATAATAAATGAAAATTCATCACAGGAATAAAATACATTTTAAAATATATTCAAATAGAAAACAGTTCTTTTAATGGTAACACTATTTTACAATGTCATTGTTACACATTTTACATGTAGTTACTGTGGTAATAACTAGAAATGCACAATTACATGCAATTAACCCTAAACCAAACCCTCACCCTAAACCTATAGTAAGTACATGTAGTTAATTATTATTACTCAGTACTTAAATGTATAATTACACTGTAATACTGATACTTTAAAATAAAATGTAACCCTTTGATTTATAATAATATTTCGCAATATTACAGTTTTTACTGTATTTTTTGAACAAATAAATGCAGCCTTGGTGAACGTAAGAGACTTCTTTTAAAAACATTCAAAAATTGTAATGCTTCCAAACTTTTGTAGGTGTTTTTATCAGTGTGCACTGCTCTATTGACGGTTACCATGACTGGACCCGCTCTGGTTTCGTCTCTCCTGGCACTGGCCTGTGTTCTCCTGCCACTATGTGCTGCTCAAGGCAGCTGTGTGGGCAGATGTGGCGAGCCGTTCACACGCGGACAAATCTGTAACTGTGACTACAACTGTTTTGTCCACGGCGAATGCTGCAAGGATTTTGATGACGTCTGCACCGCCAGTGACTCCTGCAGGGGTCGCTGTGGTGAGCCGTTCCGCCGCGGGAGACAGTGTGAGTGCGATTCAGACTGCGTGCTGCACAACACATGCTGTCCTGACTACAGCCGACAGTGTGATGCTTTTACCAATTTGCAAGCTGCAAGAAGCTCAAAACCAAACAAACCAACAGTCCCTCCCAAGACTAAAACACCAAAGATGCCTGATCTGAAGCCCCTCAGAGCCCCCAAGAAGCCTTCAGACAGCAAGAGTGAGGAGGAAGGTACAGATTATACTGAGGAGTGTATGGCAGCATGTCTCGCAGCTCAGCAAAGCCCAGATCTCATGAGAGATGGGACTAGACTAAATAACTTTATGGCTCCATCTGAAGTTCAATCACTTCCTGCTGGTGGCCCTTTGCCCCAGGACATCGGCCTCCATGCTTCTCTGACACCCTCTGACATACCAGGTATTGGTTCCAACCCATCTGGGTTCCCTCTGCCATCCGGGTTCCTTCTGCCAGAATCCGGTCCCGCTCCTTCAGCTGGGCCACTACAGGCAGGGGGTCCTTCCTCTGGGAATCCCCTAACCCTCCCTGTGCAGGTCTCCCTCTCAATCAGCGAACAAGGTGACGGGCCATCCAGCGGACCTGCCTCTGGTTCAGGTCACTTCTTTTGGCTGCTGAACCCCAAGACCAAGAGGGTCGGTCCTGCTCGTAGAATCACTGAAGAACTGGGCATCCCGTCTCCCATTGACACGGCCTTCACACGCTGCAACTGCCAGGGCAAGACCTACATCATTAAGGGTGACAACTACTGGAGTTTTGAGAATGGTGTTAAAGAGCCTGGATATCCCAGATCGGTGTCCCAGGACTTTGGTGGGCTCACCGGGGTGATCACTGCTGCTCTGCCAGTCCCAGCCACCAGAAAGAAGCCAGAGTCTGTATACTTCTTCAAGAAAGGAGGTACAATTCAGAAATTCTTTTATCCACCTGGAAGTGGACCAACTTGCAGTGGAAAGAGATCCAAAAATTCAGTCTACGCCAAGATCCGCCGTGCCAGACAAGCAGAGATCCAGTTGTCAGGGGAGATCAACATCAAACTCAAAATGAAGGGCTTCCCGACCCCTGTGACATCAGCCATGTCCATGCCCAACCCCAAGAAGTCTGATGGTTTTGATTACTTCGTTCTCTCTTGGCCTAAGGTCTTCAACATCAAGATTAGCGGTGAGCTGCCTGCTTTGTCAGCCCCTGTCAGCCATTCCTCTCAGCAGAATGACATCAGCAAGTGGCTCAACTGTGCCTGAAAAACCAGCACTAAACAACCACCACCAGCAGCTGCATGGCGAGAAAGATTCTCCATTTATTAGCAAAACTTCTGAACAGAGTCAGGATGATTACTCACAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05936410_05942402.mRNA True 2805 mRNA 0.41 13 5935178 5942505

Neighbor

gene id symbol gene type direction distance location
CI01000004_05920907_05931169 RXRGA, RXRGB, RXRAA coding upstream 3710 5920907 ~ 5931468 (+)
CI01000004_05870493_05877153 OLFML2BB coding upstream 57736 5870493 ~ 5877442 (+)
CI01000004_05837208_05841141 NA coding upstream 94037 5837208 ~ 5841141 (+)
CI01000004_05812640_05834517 AGL, AGLA coding upstream 100661 5812640 ~ 5834517 (+)
CI01000004_05800602_05802011 NA coding upstream 133091 5800602 ~ 5802087 (+)
CI01000004_05968468_05973840 NA coding downstream 25963 5968468 ~ 5973840 (+)
CI01000004_05995720_05996936 NA coding downstream 53215 5995720 ~ 5998165 (+)
CI01000004_06023884_06040211 PLA2G4A, PLA2G4AA coding downstream 81379 6023884 ~ 6040434 (+)
CI01000004_06044460_06046940 ARPC5, ARPC5B, ARPC5A coding downstream 101622 6044127 ~ 6048111 (+)
CI01000004_06054498_06061215 IVNS1ABP, IVNS1ABPB coding downstream 110307 6052812 ~ 6061383 (+)
G28178 NA non-coding upstream 88350 5846476 ~ 5846828 (+)
G28136 NA non-coding upstream 213056 5717112 ~ 5722122 (+)
G28023 NA non-coding upstream 289763 5645177 ~ 5645415 (+)
G28020 NA non-coding upstream 293065 5641840 ~ 5642113 (+)
G28018 NA non-coding upstream 295246 5639731 ~ 5639932 (+)
G28159 NA non-coding downstream 3193 5945698 ~ 5947048 (+)
G28154 NA non-coding downstream 9164 5951669 ~ 5953194 (+)
G28213 NA non-coding downstream 79957 6022462 ~ 6022687 (+)
G28218 NA non-coding downstream 100639 6043144 ~ 6043395 (+)
G28219 NA non-coding downstream 101138 6043643 ~ 6043963 (+)
G28165 NA other upstream 202177 5732589 ~ 5733001 (+)
G27805 NA other upstream 561375 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2382732 3550329 ~ 3553423 (+)
G26245 NA other upstream 2412785 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 3176240 2745885 ~ 2769135 (+)
G28302 NA other downstream 527523 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 628715 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1712267 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2491200 8414316 ~ 8439933 (+)
G28859 NA other downstream 2656730 8599235 ~ 8599603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location