G28219


Basic Information

Item Value
gene id G28219
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6043643 ~ 6043963 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31885
ATATTGGTGAGTGAACTACAAATTGTGTGACAAGCAGCTGAACAATACGTATAAAGTTTCTTTTTTGAAGAGTGCTATTGCCCAGGGAAGAACTTTGATGCCAAAAAACTTGTATATACTTAACACGTATGGTTGGTTAATAAAATTTGATCCATGACACCACATTCATATAATATAATGGGTTGATTTTTTTGTTAATTCTAAAATGGCAGATGTCTATCTACTCAGATGTAGGCTACTTGTACAGCCCGTTATCTTCCCTAATACACTGGTAGAACATTTTGGCATTGCTTGCTAATCAAATTTGATAGCATGAATGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31885 True 321 lncRNA 0.34 1 6043643 6043963

Neighbor

gene id symbol gene type direction distance location
CI01000004_06023884_06040211 PLA2G4A, PLA2G4AA coding upstream 3209 6023884 ~ 6040434 (+)
CI01000004_05995720_05996936 NA coding upstream 45478 5995720 ~ 5998165 (+)
CI01000004_05968468_05973840 NA coding upstream 69803 5968468 ~ 5973840 (+)
CI01000004_05936410_05942402 NA coding upstream 101138 5935178 ~ 5942505 (+)
CI01000004_05920907_05931169 RXRGA, RXRGB, RXRAA coding upstream 112175 5920907 ~ 5931468 (+)
CI01000004_06044460_06046940 ARPC5, ARPC5B, ARPC5A coding downstream 164 6044127 ~ 6048111 (+)
CI01000004_06054498_06061215 IVNS1ABP, IVNS1ABPB coding downstream 8849 6052812 ~ 6061383 (+)
CI01000004_06081028_06109613 FAM129AB coding downstream 36848 6080811 ~ 6109613 (+)
CI01000004_06156517_06161977 PRRX1A, PRRX1, NOTO, PRRX1B coding downstream 112366 6156329 ~ 6162069 (+)
CI01000004_06236166_06239572 NA coding downstream 192203 6236166 ~ 6239955 (+)
G28218 NA non-coding upstream 248 6043144 ~ 6043395 (+)
G28213 NA non-coding upstream 20956 6022462 ~ 6022687 (+)
G28148 NA non-coding upstream 24985 5881481 ~ 6018658 (+)
G28154 NA non-coding upstream 90449 5951669 ~ 5953194 (+)
G28159 NA non-coding upstream 96595 5945698 ~ 5947048 (+)
G28220 NA non-coding downstream 24183 6068146 ~ 6068741 (+)
G28241 NA non-coding downstream 126457 6170420 ~ 6170655 (+)
G28244 NA non-coding downstream 129251 6173214 ~ 6173416 (+)
G28254 NA non-coding downstream 137702 6181665 ~ 6181881 (+)
G28258 NA non-coding downstream 138854 6182817 ~ 6192730 (+)
G28165 NA other upstream 310642 5732589 ~ 5733001 (+)
G27805 NA other upstream 669840 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2491197 3550329 ~ 3553423 (+)
G26245 NA other upstream 2521250 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 3284705 2745885 ~ 2769135 (+)
G28302 NA other downstream 426065 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 527257 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1610809 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2389742 8414316 ~ 8439933 (+)
G28859 NA other downstream 2555272 8599235 ~ 8599603 (+)

Expression


Co-expression Network