CI01000004_05995720_05996936


Basic Information

Item Value
gene id CI01000004_05995720_05996936
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5995720 ~ 5998165 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05995720_05996936.mRNA
ATGGCGGAGAAAACATCTGAAAAGTCAGGAAGCCACGCCAGACCAAAACGTCCACAAGAATTTAATCCTCTGTCAAAGGCACTTGAATTAGTACTGGAGTCAATTGCTGGGGACAAATCAAAGGTAGAGGACTTTGAGACTCAGAGGTCTGACATTGATGACCCCGTAGAGGATGTTGATCCTCCATCCTCCACAACAGGAGCCAAGCAGCAGAGAGGAGGAGAGTACAGTCCCAGATGTCGGACTCAGCAGGTTGAGTCTAATGGCTCAAATGATGAACCTGAAGAGCCAACACCAGGACCAAGCTTTCAAGGACAACCAAAGCAAGGACGAGGAGTGCGCTGGAGGGCTGCTCAATTGACCCTAAACCTAGCCCAGTTTGAGCCTGAGGAGGAAACTAAGCAGGACAGAAAAGGCTGGACCACACTGGACTATGTAAACCAGTATATTGATAAAGATTTAATAAAACTGATTGTAAACTGCTCCAATGCTACAGCACTAGCTAGGAGTGGGTACCCGCTCAGCACATCAGTTGATGAGATGTATCATTTCTTTGTTGCCTCAATTTTGATGTCCTGTGTCCTGTACCCACAAATCAGGATATACTGGTCCACCGCGTTAAGATTCCCAGCCATCACAGAAAGATTCACATGCAATAGATTTTACAAACTGAGGCAATCAATAAAGGTGGTCATTGATGATGACATTCCAGAAGACCTGAGGGAATGTGACAAATTCTGTAAGGAGAGGCCATTTATTGACAGCATTCTGAAAGGCTGAAGGTCTCAGGCAAGACCCAAGAGCGTTTCAATTGATGAGCATACGATACCAAATGATACCATTTATCATTTGGTACCATTTACAGGAGCCTGTCCTTGTCGACAATATCGACAATATCTGCCAATGAGGACCAATTGACTTGTGACATATCCCAGATATTGTCCTTCCTTCAAGACTTAATGGATAGAGGCCGTACTCTCTCTACCCTTAAGGTCTATGTCGCAGCTATAGAAGCCTCTCACGCTCCTATAGCGGGGCAGTTGATAGGGAGGGAGAAACGACCTTGTTGTTCGCTTCCTGAAGGGATCCAGGAGGTTAAATCCCCCTCGTCCCCTTTCGGTTCCTACCTGGGACCTTTCTGTGGTTCTTAAAGGTCCTCCCTTTGAACCAGTCCAGACTGCCAACTTACGGCCCCTGTTGTTGAAAACTGCCTTACTGTTAGCTTTAGCATCGGTTAAGCGTGTGGGAGATTTACAGGCGCTCTCTGTGAGCCCCTCGTGTCTTGAATTTGGGCCTAACGGCTCCAAAGTCGTCCTGAAACCGAGACATGTCCCGAAAGTCCTATGGAGTCGATGCTATAGCACTCGCTTACTCCTCCTTAGGCCTTCAATGCCCTTTGGGTGTAAGAGTGCATTCCACGAGAGGTATAGCCTCCTTGTGGGCGTGGTCCTGTGGCGTTTCCATTGCTGACATCTGTGCGGCAGCCGGCTGGGCCTCACCATCCACATTTGTCAGGTTTTATAATCTAGATGTCCCTGCGCTTCAGACACAGGTCCTTTCTGCATGAGCCTCCCTGCTGTGTCCAGCTTATGGCTTTCCATTACGACCCTGACCACGTCTGGGCGTAACTATGTTCTGTGCCCTCTATATACAGCCTAGGCCCCTCTGGTGCCCTAGTTTATGGGTTTGGGAGGATGACTACAGTGTTTCAGTTCCCGTTGTCTGGGTCATCCTGTCTTATAAGTAGACAGGTCCTCCCAACATCCATTTTCAAATAAAGTCGTTGCATGGGTGACCGATGTCATCAGCTCATGTAGTGTGTAACCCCCTGTTGCGGATCATTAACGTAGTGTCACATAGTGTGAACACCAGAATGACTTCAAGACTCCACAGCAGGTCATTTAGTCTGAACAGCACAGCGATCTGCCGACGTTTAAAGTCCTGTAGTGTAAACTTGGCTTAAGTAACATAGGCCTACTTGGTGCTAAACTGGATTGAACTACCAAGCA

Function

NR:

description
lambda-recombinase-like protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05995720_05996936.mRNA True 2009 mRNA 0.48 3 5995720 5998165

Neighbor

gene id symbol gene type direction distance location
CI01000004_05968468_05973840 NA coding upstream 21880 5968468 ~ 5973840 (+)
CI01000004_05936410_05942402 NA coding upstream 53215 5935178 ~ 5942505 (+)
CI01000004_05920907_05931169 RXRGA, RXRGB, RXRAA coding upstream 64252 5920907 ~ 5931468 (+)
CI01000004_05870493_05877153 OLFML2BB coding upstream 118278 5870493 ~ 5877442 (+)
CI01000004_05837208_05841141 NA coding upstream 154579 5837208 ~ 5841141 (+)
CI01000004_06023884_06040211 PLA2G4A, PLA2G4AA coding downstream 25719 6023884 ~ 6040434 (+)
CI01000004_06044460_06046940 ARPC5, ARPC5B, ARPC5A coding downstream 45962 6044127 ~ 6048111 (+)
CI01000004_06054498_06061215 IVNS1ABP, IVNS1ABPB coding downstream 54647 6052812 ~ 6061383 (+)
CI01000004_06081028_06109613 FAM129AB coding downstream 82646 6080811 ~ 6109613 (+)
CI01000004_06156517_06161977 PRRX1A, PRRX1, NOTO, PRRX1B coding downstream 158164 6156329 ~ 6162069 (+)
G28154 NA non-coding upstream 42526 5951669 ~ 5953194 (+)
G28159 NA non-coding upstream 48672 5945698 ~ 5947048 (+)
G28178 NA non-coding upstream 148892 5846476 ~ 5846828 (+)
G28136 NA non-coding upstream 273598 5717112 ~ 5722122 (+)
G28023 NA non-coding upstream 350305 5645177 ~ 5645415 (+)
G28213 NA non-coding downstream 24297 6022462 ~ 6022687 (+)
G28218 NA non-coding downstream 44979 6043144 ~ 6043395 (+)
G28219 NA non-coding downstream 45478 6043643 ~ 6043963 (+)
G28220 NA non-coding downstream 69981 6068146 ~ 6068741 (+)
G28241 NA non-coding downstream 172255 6170420 ~ 6170655 (+)
G28165 NA other upstream 262719 5732589 ~ 5733001 (+)
G27805 NA other upstream 621917 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2443274 3550329 ~ 3553423 (+)
G26245 NA other upstream 2473327 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 3236782 2745885 ~ 2769135 (+)
G28302 NA other downstream 471863 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 573055 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1656607 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2435540 8414316 ~ 8439933 (+)
G28859 NA other downstream 2601070 8599235 ~ 8599603 (+)

Expression


Co-expression Network