RNA id: CI01000004_05995720_05996936.mRNA



Basic Information


Item Value
RNA id CI01000004_05995720_05996936.mRNA
length 2009
RNA type mRNA
GC content 0.48
exon number 3
gene id CI01000004_05995720_05996936
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5995720 ~ 5998165 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCGGAGAAAACATCTGAAAAGTCAGGAAGCCACGCCAGACCAAAACGTCCACAAGAATTTAATCCTCTGTCAAAGGCACTTGAATTAGTACTGGAGTCAATTGCTGGGGACAAATCAAAGGTAGAGGACTTTGAGACTCAGAGGTCTGACATTGATGACCCCGTAGAGGATGTTGATCCTCCATCCTCCACAACAGGAGCCAAGCAGCAGAGAGGAGGAGAGTACAGTCCCAGATGTCGGACTCAGCAGGTTGAGTCTAATGGCTCAAATGATGAACCTGAAGAGCCAACACCAGGACCAAGCTTTCAAGGACAACCAAAGCAAGGACGAGGAGTGCGCTGGAGGGCTGCTCAATTGACCCTAAACCTAGCCCAGTTTGAGCCTGAGGAGGAAACTAAGCAGGACAGAAAAGGCTGGACCACACTGGACTATGTAAACCAGTATATTGATAAAGATTTAATAAAACTGATTGTAAACTGCTCCAATGCTACAGCACTAGCTAGGAGTGGGTACCCGCTCAGCACATCAGTTGATGAGATGTATCATTTCTTTGTTGCCTCAATTTTGATGTCCTGTGTCCTGTACCCACAAATCAGGATATACTGGTCCACCGCGTTAAGATTCCCAGCCATCACAGAAAGATTCACATGCAATAGATTTTACAAACTGAGGCAATCAATAAAGGTGGTCATTGATGATGACATTCCAGAAGACCTGAGGGAATGTGACAAATTCTGTAAGGAGAGGCCATTTATTGACAGCATTCTGAAAGGCTGAAGGTCTCAGGCAAGACCCAAGAGCGTTTCAATTGATGAGCATACGATACCAAATGATACCATTTATCATTTGGTACCATTTACAGGAGCCTGTCCTTGTCGACAATATCGACAATATCTGCCAATGAGGACCAATTGACTTGTGACATATCCCAGATATTGTCCTTCCTTCAAGACTTAATGGATAGAGGCCGTACTCTCTCTACCCTTAAGGTCTATGTCGCAGCTATAGAAGCCTCTCACGCTCCTATAGCGGGGCAGTTGATAGGGAGGGAGAAACGACCTTGTTGTTCGCTTCCTGAAGGGATCCAGGAGGTTAAATCCCCCTCGTCCCCTTTCGGTTCCTACCTGGGACCTTTCTGTGGTTCTTAAAGGTCCTCCCTTTGAACCAGTCCAGACTGCCAACTTACGGCCCCTGTTGTTGAAAACTGCCTTACTGTTAGCTTTAGCATCGGTTAAGCGTGTGGGAGATTTACAGGCGCTCTCTGTGAGCCCCTCGTGTCTTGAATTTGGGCCTAACGGCTCCAAAGTCGTCCTGAAACCGAGACATGTCCCGAAAGTCCTATGGAGTCGATGCTATAGCACTCGCTTACTCCTCCTTAGGCCTTCAATGCCCTTTGGGTGTAAGAGTGCATTCCACGAGAGGTATAGCCTCCTTGTGGGCGTGGTCCTGTGGCGTTTCCATTGCTGACATCTGTGCGGCAGCCGGCTGGGCCTCACCATCCACATTTGTCAGGTTTTATAATCTAGATGTCCCTGCGCTTCAGACACAGGTCCTTTCTGCATGAGCCTCCCTGCTGTGTCCAGCTTATGGCTTTCCATTACGACCCTGACCACGTCTGGGCGTAACTATGTTCTGTGCCCTCTATATACAGCCTAGGCCCCTCTGGTGCCCTAGTTTATGGGTTTGGGAGGATGACTACAGTGTTTCAGTTCCCGTTGTCTGGGTCATCCTGTCTTATAAGTAGACAGGTCCTCCCAACATCCATTTTCAAATAAAGTCGTTGCATGGGTGACCGATGTCATCAGCTCATGTAGTGTGTAACCCCCTGTTGCGGATCATTAACGTAGTGTCACATAGTGTGAACACCAGAATGACTTCAAGACTCCACAGCAGGTCATTTAGTCTGAACAGCACAGCGATCTGCCGACGTTTAAAGTCCTGTAGTGTAAACTTGGCTTAAGTAACATAGGCCTACTTGGTGCTAAACTGGATTGAACTACCAAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU31818 lncRNA upstream 42526 5951669 ~ 5953194 (+) True G28154
TU31824 lncRNA upstream 48672 5945698 ~ 5947048 (+) True G28159
TU31843 lncRNA upstream 148892 5846476 ~ 5846828 (+) True G28178
TU31793 lncRNA upstream 273598 5717112 ~ 5722122 (+) True G28136
TU31677 lncRNA upstream 350305 5645177 ~ 5645415 (+) True G28023
TU31811 lncRNA downstream 15414 6013579 ~ 6018658 (+) True G28148
TU31879 lncRNA downstream 24297 6022462 ~ 6022687 (+) True G28213
TU31884 lncRNA downstream 44979 6043144 ~ 6043395 (+) True G28218
TU31885 lncRNA downstream 45478 6043643 ~ 6043963 (+) True G28219
TU31886 lncRNA downstream 69981 6068146 ~ 6068741 (+) True G28220
CI01000004_05968468_05973840.mRNA mRNA upstream 21880 5968468 ~ 5973840 (+) True CI01000004_05968468_05973840
CI01000004_05936410_05942402.mRNA mRNA upstream 53215 5935178 ~ 5942505 (+) True CI01000004_05936410_05942402
CI01000004_05920907_05931169.mRNA mRNA upstream 64252 5920907 ~ 5931468 (+) True CI01000004_05920907_05931169
CI01000004_05870493_05877153.mRNA mRNA upstream 118278 5870493 ~ 5877442 (+) True CI01000004_05870493_05877153
CI01000004_05837208_05841141.mRNA mRNA upstream 154579 5837208 ~ 5841141 (+) True CI01000004_05837208_05841141
CI01000004_06023884_06040211.mRNA mRNA downstream 25719 6023884 ~ 6040434 (+) True CI01000004_06023884_06040211
CI01000004_06044460_06046940.mRNA mRNA downstream 45962 6044127 ~ 6048111 (+) True CI01000004_06044460_06046940
CI01000004_06054498_06061215.mRNA mRNA downstream 54647 6052812 ~ 6061383 (+) True CI01000004_06054498_06061215
CI01000004_06081028_06109613.mRNA mRNA downstream 82646 6080811 ~ 6109613 (+) True CI01000004_06081028_06109613
CI01000004_06156517_06161977.mRNA mRNA downstream 158164 6156329 ~ 6162069 (+) True CI01000004_06156517_06161977
TU31830 other upstream 262719 5732589 ~ 5733001 (+) True G28165
TU31414 other upstream 621917 5372825 ~ 5373803 (+) False G27805
TU32005 other downstream 471863 6470028 ~ 6502087 (+) True G28302
TU32079 other downstream 573055 6572819 ~ 6574421 (+) True G28354
TU32454 other downstream 1656607 7654772 ~ 7654879 (+) True G28706
TU32590 other downstream 2435540 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 2601070 8599235 ~ 8599603 (+) True G28859

Expression Profile