RNA id: TU31884


Basic Information

Item Value
RNA id TU31884
length 252
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G28218
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6043144 ~ 6043395 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTACTGTGGAAATCACACAAGTGTCTTTTTATTGTTTTGGCAAAAAGGCACCTCATTTCAGGAAATGTCTAGTTGCTGGGAAAAACTGCAGTTAGGAATTTCCTGAAGGTACTGTACAGTAAAACTGAATTTAAAATGCAAATCCTCACAACTGAAAAGCAACGTATAGTTGTTGTTGTTGTTATTAATAATATTAATACATTAGCCTATGTAAAATAAGACAAATTATGTTAAATACTTTATAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31879 lncRNA upstream 20457 6022462 ~ 6022687 (+) True G28213
TU31809 lncRNA upstream 24486 5881481 ~ 6018658 (+) False G28148
TU31811 lncRNA upstream 24486 6013579 ~ 6018658 (+) True G28148
TU31818 lncRNA upstream 89950 5951669 ~ 5953194 (+) True G28154
TU31824 lncRNA upstream 96096 5945698 ~ 5947048 (+) True G28159
TU31885 lncRNA downstream 248 6043643 ~ 6043963 (+) True G28219
TU31886 lncRNA downstream 24751 6068146 ~ 6068741 (+) True G28220
TU31907 lncRNA downstream 127025 6170420 ~ 6170655 (+) True G28241
TU31910 lncRNA downstream 129819 6173214 ~ 6173416 (+) True G28244
TU31920 lncRNA downstream 138270 6181665 ~ 6181881 (+) True G28254
CI01000004_06023884_06040211.mRNA mRNA upstream 2710 6023884 ~ 6040434 (+) True CI01000004_06023884_06040211
CI01000004_05995720_05996936.mRNA mRNA upstream 44979 5995720 ~ 5998165 (+) True CI01000004_05995720_05996936
CI01000004_05968468_05973840.mRNA mRNA upstream 69304 5968468 ~ 5973840 (+) True CI01000004_05968468_05973840
CI01000004_05936410_05942402.mRNA mRNA upstream 100639 5935178 ~ 5942505 (+) True CI01000004_05936410_05942402
CI01000004_05920907_05931169.mRNA mRNA upstream 111676 5920907 ~ 5931468 (+) True CI01000004_05920907_05931169
CI01000004_06044460_06046940.mRNA mRNA downstream 732 6044127 ~ 6048111 (+) True CI01000004_06044460_06046940
CI01000004_06054498_06061215.mRNA mRNA downstream 9417 6052812 ~ 6061383 (+) True CI01000004_06054498_06061215
CI01000004_06081028_06109613.mRNA mRNA downstream 37416 6080811 ~ 6109613 (+) True CI01000004_06081028_06109613
CI01000004_06156517_06161977.mRNA mRNA downstream 112934 6156329 ~ 6162069 (+) True CI01000004_06156517_06161977
CI01000004_06236166_06239572.mRNA mRNA downstream 192771 6236166 ~ 6239945 (+) False CI01000004_06236166_06239572
TU31830 other upstream 310143 5732589 ~ 5733001 (+) True G28165
TU31414 other upstream 669341 5372825 ~ 5373803 (+) False G27805
TU32005 other downstream 426633 6470028 ~ 6502087 (+) True G28302
TU32079 other downstream 527825 6572819 ~ 6574421 (+) True G28354
TU32454 other downstream 1611377 7654772 ~ 7654879 (+) True G28706
TU32590 other downstream 2390310 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 2555840 8599235 ~ 8599603 (+) True G28859

Expression Profile