CI01000004_15056504_15062261 (RABGAP1L2)


Basic Information

Item Value
gene id CI01000004_15056504_15062261
gene name RABGAP1L2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15055922 ~ 15063180 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15056504_15062261.mRNA
TGATAAAAACAGCAGGTCTCAGCCTCCATCAATCCCATGAACATATACAGCAGCCAGATATAAGCAGCTTAAGGAATGGAGGAATGTACTGGCACCTGCTTGTCCCCAGCAAACCACAGTGTTCTTGTGTGAGGGGCGACCTGAAGGATTACAGCAAGAATTTCAATTTCACAGTCTTTAGCCCTGAGCTTGAACCCACAGGCAGGCTAGCAAACTCCAAACGGCGGCGGTAAAAATATCTGTTCTGGAACCTATTTGTGTTGCATTCATAATTTTAATGATGTTCTGCTTCAGCAATGTGTGGAAATAATTAGTATTGGCTGCTGGATTGTGGAATAATACTGTGAGGCAGTTGGAAGGCCATGATGTTTTGATACCTGCTTATTAGGTAAGAGAAGAACTGCAGGACAAAGGTGGACTGAAATGAAACTCCTCCCATAGTCTTAAGGGCAGGGCTTGCATTGAGACAAGACAGATATAGACTGCTGCCTGTCAAACCTGTTGTCATTTCTGATTTCTCCAGACAACTTCAGTTGCCTATTCTGTATTTTGAGATAGCTTGTATTCTACCCGCCTGCCAAAATGATGGAAGAAGTGTCTATCTCTGTTGCTTATGATGCCCACATTATTGACCAAATGTCAGAGGAGGAGATCCTGGCTAGTCTAGTGGTGGAGTCTCTACCGAAACAAGTGGTGCCATCTAAAAAGCCAAAATTAAGAGATAACCAATTGCAGCAAGAAGACCCACTCGACAGGTATGAGAGAGAAAACCTCAAGCTTCAGGAAACCAGTTTGCGTCTGGAGCAGGAAAATGATGACCTTGCACAAAAACTTGTCACCAGCAAGATTGCGCTGAGGAATGCTTTAGATCAGACCGAGGACCAGGTGGATGAATTAACCAAGGAGCTTTTAAAAACCAAACAGCTTCTGAAGATTACAGAGGAGGAGAAAAGGGGAAAGGAGGAGGAGGCTTCACAGCTGAAAGAGATGTTTAGGAGAGAGCTGGACAAAGCAGAATCAGACATTAAGAGATCAAACAACATCATCGCAGACTACAAGCAGATTTGCTCCCAACTGAACACTAAACTTGAACACCAGAAAGCTCAAGCAGACAAAGAGCTAGCAGTTATCAAGAGCAAGATGATGGAGTGTGAGCGGTGCAGACACATCTTTAGTACGGATGGATCAATTCAGCTGTGCTCTGAGAGTGAAGATACCTCTGCTCAGGAGGAAGTGAAGGCCTCTCTCAGAGAACAGGTCCAAGAGTTAGAGAGAGAGCTAGTCCAGGCCAAGCTACAAATGGTGGAGTCCAAATGCAAGATCCAAGAGTTGGAGCACCAAAATGCAGTTGTGACGACTGAACTTCAGGCTGCTAAGAACACATGGCTCAGAAAAACTCTGGGCTCTTTCAGGACAGTTGCCAGCAGCCATCAGAGCTCCTCTCAAACAGATTCTGCCTGGAACCCCACAAATAACCCCCATTCCAGCTGGGTCACCAGAAGGCTCTCCTGGGCCCATCGAGAAGGGAGAGCAGCCAAAGTATGAAAAGGAGTAGCATAGGCCTACTAGTGGAGAAGGAAAGTATTTCATTAGAGCGCTCCTGAAATAAGTCTCACAAATGATGAGAAGGCTATTCTCTCAGACCTTAGGGCCAGTGACATAGTCACAATGTTAAGAGTCTTAAGAACTAGTCTGACCAACTAGCAGTTAGCCAAGGGGTGATCTGAAAAGTCAAATTAGACCAATCTACCTTACATAAAAAGTTATGATCAGTCTTAAAGAAAAAAAATACATGACTAACTTTTAAGACGAATCTAAGCAGTTTATGCAACTAGCCACAGAGGACAATATCCACCTCATTTTTAATGCAAGGTCAAATTTGATGTGTCTGGCTTCTGGTGTCATCCGCTTCCAGTTATTTTTAGCTGTACAAAACAGCTTGTTATGCTGCTTGATATTGCAAACTGGTGTTTTTATTCCATATTATTTTAATGTAATTATAAACACACTGGTTTCTAGCACTTTGTTATTCTTCTAGTTATTTACCTATAGTGGCTAATGAACCAGAAGTCTCACACATTCACAGAAAATAGCTTACTTCTGCATTGCAAAATAAGGTGGATAGATCTGTATGGTTGTAAACAGTGGAAATGAGAGGATTTTTTAAAGAATGGCTGATAGCAGTAAGAAATATCTGCACATCTAGAGATGAGTGTAACATATCAGTTACTTAAGGCAATCTCACATTCAAGCATACACTGTAAAAGGTGTTTTGCGAGTTAACTTAAATATTACACTTCTAAATGAACTAGTTTAATTTCATTAAATCAACCTAACTTTATTAGGTTACATCAACAAAAGTAATGTTTAGAACAAGTACAAACAGTTGGTTTTGTACACATTTATTTTTCATTGTTGGTACTGTACAATGTGAATGTATTTCTTTCATTATCTTCTACAACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15056504_15062261.mRNA True 2464 mRNA 0.41 8 15055922 15063180

Neighbor

gene id symbol gene type direction distance location
CI01000004_15048166_15051524 NA coding upstream 3105 15048166 ~ 15052817 (+)
CI01000004_15010164_15028433 NRD1A, NRDC coding upstream 27214 15010164 ~ 15028708 (+)
CI01000004_14934532_14938094 NA coding upstream 117828 14933874 ~ 14938094 (+)
CI01000004_14919607_14929407 GOLIM4B coding upstream 126515 14919475 ~ 14929407 (+)
CI01000004_14910312_14915166 NA coding upstream 139943 14910114 ~ 14915979 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB coding downstream 28020 15091200 ~ 15097173 (+)
CI01000004_15110181_15110483 NA coding downstream 46418 15109598 ~ 15110625 (+)
CI01000004_15126731_15131774 NA coding downstream 63504 15126684 ~ 15132238 (+)
CI01000004_15200553_15209521 SLC1A8B coding downstream 135062 15198242 ~ 15209824 (+)
CI01000004_15229290_15233374 PEX19 coding downstream 165596 15228776 ~ 15234597 (+)
G34009 NA non-coding upstream 10477 15045242 ~ 15045445 (+)
G34004 NA non-coding upstream 19689 15036017 ~ 15036233 (+)
G33951 NA non-coding upstream 202480 14845345 ~ 14853442 (+)
G33924 NA non-coding upstream 247633 14768014 ~ 14808289 (+)
G33919 NA non-coding upstream 263807 14758132 ~ 14792115 (+)
G34017 NA non-coding downstream 30925 15094105 ~ 15094375 (+)
G34027 NA non-coding downstream 40170 15103350 ~ 15103577 (+)
G34028 NA non-coding downstream 40786 15103966 ~ 15104168 (+)
G34031 NA non-coding downstream 43242 15106422 ~ 15106699 (+)
G34032 NA non-coding downstream 43556 15106736 ~ 15160060 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1019022 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2400211 12646838 ~ 12652570 (+)
G31865 NA other upstream 2860775 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3388263 11666900 ~ 11667659 (+)
G31710 NA other upstream 3413522 11637251 ~ 11642400 (+)
G34220 NA other downstream 876177 15939357 ~ 15939950 (+)
G33815 NA other downstream 1000235 16063415 ~ 16066464 (+)
G34400 NA other downstream 1914148 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015716 rabgap1l2 coding NC_007113.7 CM002886.2 36898982 ~ 36905195 (+)