XLOC_015716 (rabgap1l2)


Basic Information

Item Value
gene id XLOC_015716
gene name rabgap1l2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36898982 ~ 36905195 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031299
GTCATTTCTCTAGTCGCCTAAGCTGTATTTCGAGATCACTTGTGCTCTGCTCACCTGCCAAAATGATGGAAGAAGTGTCTATCGCTGTGGCCTATGATTCCCATATTATTGACCAGATGTCTGAGGAGGAGATCCTGGCGAGTCTGGTAGTGGAGTCTCTGCCAAAACAAGTGGTGCCATCTAAAAAGCAAAAATTAAGAGATAACCAAGAACAACCAGAAGATCCACTTGACAAATATGAGAGAGAAAACCGCAAGCTGCAGGAGACCAGTTTGCGTCTGGAGCAGGAGAACGACGACCTTGCACAAAAACTTGTAACAAGCAAGATTGCATTGAGGAATGCTTTAGATCAGACCGAGGACCAAGTGGATGAATTGACCAAGGAGCTTTCAAAAGTCAAACAGCTTCTTGTGGTAACAGAGGAGGAGAAGCGAGGAAAAGAGGAGGAGGCTTCACAGCTCAAAGAGATGTTCAGGAAAGAGCTGGACAAAGCAGAATCCGACATTAAGAGATCAAACAGCATCATCGCCGACTACAAGCAGATTTGCTCACAGCTGAACACTAAACTTGAAAACCAGAAAGAAGAAGCAGACAAGAATCTCGCTTTTATCAAGAGTAAGCTCCAGGAGTGTGAGAGGTGCAGTCGCATCTTCAGTGTGGATGGGTCGATTGAAAGCTGCTCCGAGAGTGAAGACAGATCTGCTCAGGATGAAGCAAAGACCTCTCTCAGAGAACAGGTCAAAGAGCTAGAGAAAGAGCTGGCACAAACAAAGCTACAGATGGTGGAGTCCAAATGTAAAATCCAGGAGCTGGAGCACCAAAAAGCAGTTCTGATGACTGAACTTCAAGCTGCTAAAAACACATGGCTCAAAAAAACCCTGGACTCATTCAAGACAGCTGCCAGCGGCCAACAGAGCTCCTCACAGACTGATTCTGCCTGGAGCCCCAATAATAACCCCCAGTCCAGCTGGGTCACCAGACGGTTCTCCTGGGCCCATCGAGAAGCAAGAGCAACCAAAGTATGAAATGGAGAAGTGCGTAGCGTCTAATCGTGGAGAAGAATTTAATGAGAGCACTCGTAATGAGAACACCAACGTTACGCTCTCAGACCAGAGGACATTGCAAATCTTGTAAACACTGGGAATGAAAAGATTTTCAAAACGTCTGCATTTTCGGGGATCGATGCGATGAATACGGTTCTTTTAAAGCACCCTAACACATAGAGACTACCTAAAGTTTTCTAGTGATGTTTTTGGGAAACCAGGTAACGTTATGTGTAAATGGGACGTGTTCCAGTAGTTCACACTTCGCAGAGTAGCTGTATTGACGTCGCGTGTTGTTGAAACGCGAAACACTTCAGGAAGCTGTTATTTCTTTCAACATACCTTGTAATGTTCATTGAAGTTTTTATAGTAAATTGTTTTCACATCCTACTTCATATCCCTCGCGTTCACTGTCACTGCAGCAAGACCATTGAGCAAGACAGTATAACGCAAAACTGAGGTCACAGCAGGTCCCACCTTCACTAACTGCTACCTGATCGATGCTAAAATTTGATTGGGTGGTAATTCTGTTCTTCAAAATATGCTTTGACG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-414 No description available

Ensembl:

ensembl_id ENSDARG00000060315

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031299 True 1595 mRNA 0.45 8 36898982 36905195

Neighbor

gene id symbol gene type direction distance location
XLOC_015715 si:dkey-193b15.8 coding upstream 6099 36862473 ~ 36892883 (+)
XLOC_015714 nrd1a coding upstream 44482 36828243 ~ 36854500 (+)
XLOC_015713 dre-mir-2198 coding upstream 145224 36753649 ~ 36753758 (+)
XLOC_015712 NA coding upstream 155070 36742343 ~ 36743912 (+)
XLOC_015711 pdcd10b coding upstream 167019 36721357 ~ 36731963 (+)
XLOC_015717 gadd45bb coding downstream 34554 36939749 ~ 36941988 (+)
XLOC_015718 slc1a8b coding downstream 205309 37110504 ~ 37122351 (+)
XLOC_015719 pex19 coding downstream 229086 37134281 ~ 37146572 (+)
XLOC_015720 copa coding downstream 271619 37176814 ~ 37206080 (+)
XLOC_015721 apoda.2 coding downstream 302266 37207461 ~ 37215989 (+)
XLOC_015707 NA non-coding upstream 256220 36638931 ~ 36642762 (+)
XLOC_015705 NA non-coding upstream 334509 36552692 ~ 36564473 (+)
XLOC_015704 NA non-coding upstream 427872 36379239 ~ 36471110 (+)
XLOC_015725 NA non-coding downstream 396213 37301408 ~ 37307571 (+)
XLOC_015733 NA non-coding downstream 921539 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 non-coding downstream 931424 37836619 ~ 37846849 (+)
XLOC_015737 LO017954.1 non-coding downstream 1021185 37926380 ~ 37927412 (+)
XLOC_015738 NA non-coding downstream 1062790 37967985 ~ 37971044 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_15056504_15062261 RABGAP1L2 coding CI01000004 null 15055922 ~ 15063180 (+)