XLOC_015714 (nrd1a)


Basic Information

Item Value
gene id XLOC_015714
gene name nrd1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36828243 ~ 36854500 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031295
GGCGACGATAAGTTCGGCTGACCCATCATCAGGAGGAAAGCAGCAGAGTCATAAACAGCCCCGTTCACCTCAGCCCCAGTGCTAAAATAGCGTCATTGTTCAGGATGCCCCAGACAAACAAGTTCAAATGTGCTGCAGCCAGCAGTCCGGCTCAATCTGCTGGTCCTGACCGTGGGGAACCAGTCAGAGACCCCAACGCACCTCCAGGGGACAGTGGTGGAGATGAAAACCAGGGAGACCCTCAGATTATCAAATCACCCAGTGACCCCAAACAATACAGATATATTGAGCTGAGTAATGGACTGAGGGCTCTGCTCATCTCTGATCTGAGCGGTTTAGATGGGAAAGctgaagatgaggatgatgaagattCTGAAGAGGAGGAGGCGGAAGAGGAGGCAGAGGGAGAGGAAGAAGAGGGAGACTCGGGGGAAGGAACGGATGAGGAATCTGAAGAGGAAGGAGACAGTCAGGATAGCGATTTTGAGGAGCTAGATGAGGAAAGTgaccagaagaagaaaaaaggatCTGAAAAACAGTCAGCGGCAGCCCTTTGTATTGGGGTAGGGAGTTTCAGTGACCCTAATGATTTACCTGGCCTTGCACACTTCCTGGAGCACATGGTATTCATGGGCAGCGAAAAGTACCCTTCTGAAAATGGCTTTGATGCATTCCTAAAAAAGCACGGCGGCAGTGATAACGCTTCCACTGATTGTGAGAGAACCATTTTCCAATTTGACGTGCAGAGGAAACGCTTTAAAGAAGCCCTTGACAGATGGGCTCAGTTTTTCATATGTCCTCTTATGATTGAAGATGCCATTGATCGAGAGGTTGAGGCTGTGGACAGtgAATATCAGCTTGCCAAGCCGTCCGATTCTCACCGTAAGGAAATGCTCTTTGGCAGCCTCGCAAAGCCCGACCATCCTATGAGCAAATTCTGTTGGGGAAATGCACAGACCCTAAAGACCGAGCCTAAGGAGAAGAACATCAATGTTTACAAGAGACTCCGTGAGTTCTGGAAGAGGCACTACTCTGCCCACTATATGACCCTGGCAGTGCAGTCTAAAGAGAGTCTTGACACCCTTGAGGAATGGGTTAGAGAAATCTTTAGCCAGGTGCCCAACAATGGGCAGCTGAAGCCTGATTTTTCAGACAAGCTGAATCCCTTTGAAACTCCTGCCTTCAACAAACTTTACAGAGTGGTGCCTGTTAGAAAAGTGCATGCCCTCACTATCACATGGGCTCTACCACCTCAAGAAAAGCACTACAGGGTCAAACCTCTCCATTACATCGCTTGGCTGATTGGCCACGAGGGAACTGGAAGTATCCTGTCAATGCTTAGAAGAAAGTGCTGGGCTTTGGCTTTGTTTGGTGGAAACAGCGAAACCGGTTTTGATCAGAACACCACATATTCAATTTTTAGTATCTCCATCACACTGACCGACGAGGGCTTCCAGAACTTCTATGAGGTTGCTCATCTCGTCTTCCAGTACTTGAAAATGCTTCAGACTCTTGGGCCGCAACAGAGaATATATGAAGAAATTCAAAAGATTGAGGCTAATGAATTTCACTATCAGGAGCAGACTGATCCTATTGAGTATGTGGAGGACATTTGTGAAAACATGCAGTTGTTCCCAAAAGAGGACTTCTTAACAGGAGACCAGTTAATGTTCGAGTTCAAACCAGAGGTTATCTCTGCTGCATTGAACCTCCTCACACCAGAGAAGGCCAACTTGCTGCTTTTGTCCCCTGAGCATGAAGGCCAGTGCCCTCTTAGGGAAAAGTGGTTTGGGACTCAGTACAGCACAGAGGACATAGAGCAGCACTGGAGAGAGATCTGGGCAAAAGATTTCGATTTAAATCCCAGCCTTCACCTACCTGCTGAAAATAAGTTCATCGCCACTGATTTTGCCCTCAAGACCTCTGACTGTCCGGACACCGAATATCCTGTCAGAATAATGAACAATGACCGAGGATGTCTGTGGTACAAGAAGGACAACAAGTTCAAGATCCCCAAAGcataCGTGCGGTTCCATCTCATATCACCTGTGGTGCAGAAATCTCCAAAAAACCTGGTGCTTTTTGACTTGTTTGTGAATATCCTGGTTCACAACTTGGCCGAGCCGGCCTATGAGGCTGATGTGGCGCAGCTAGAATATAAACTGGTGGCCGGTGAACATGGCCTAGTCATTAAGGTTAAGGGCTTCAATCACAAACTACCGTTGCTGTTCAACCTGATTGTGGATTATCTTGCCGATTTCTCCGCCGCTCCTGATGTATTCAGCATGTTTGCAGAGCAGCTGAAGAAAACCTACTTTAACATCCTCATCAAGCCGGAGAAGCTTGGAAAGGACGTGAGGCTGCTGATTCTGGAGCACTCGCGCTGGTCCACCATTCAGAAGTACCAGGCTGTGCTGGACGGGCTTAGTGTGGATGAGCTAATGGAGTTTGTGAGTGGCTTCAAGTCTGAGCTTTATGCTGAAGGACTACTGCAGGGAAACGTCACTAGCACTGAATCCATGGGGTTTTTACAATATGTCACAGAAAAATTGCAGTTCAAGAAGTTGTCAGTAGAGGTCCCTGTTCTCTTCAGGGTTGTGGAGCTCCCTCAGAAACATCACCTCTGCAAAGTCAAGTCTCTCAATAAGGGGGATGCAAACTCTGAGGTCACTGTGTATTATCAGTCTGGTCCTAAGAACCTGCGTGAACACACTCTGATGGAGCTGCTTGTGATGCACATGGAGGAGCCGTGTTTTGACTTCCTCCGGACCAAAGAGACTCTGGGATATCACGTCTACCCAACCTGTAGAAACACATCAGGTGTTCTTGGATTCTCCGTAACAGTGGAAACACAGGCCACCAAGTTCAACACTGAACTAGTGGAGACAAAAATTGAGGAATTTCTGGTAAGCTTTGGAGAGAAGATGAACAGCCTGAGCGATGACGCCTTCAGGACACAGGTGACCGCTCTGGTCAAGCTGAAGGGCTGTGAAGACACTCATCTGGGCGAGGAGGTGGACAGGAACTGGACAGAGGTGGTCACGCAGCAGTACGTCTTCGACAGACTGAGCAGAGAGATTGATGCGCTGAAGCTCATGACCAAGGCTGAGCTGGTGAACTGGTTTATGGAGCATCGGGGTGAAGGCAACAGGAAGCTGAGTGTACATgttgTTGGCTACGGAGTAGAAGAAAACGACCCTCCCAATGATCCACATCCTGGAGAAGAAGAAGAGGCCAGCAAGATGTCATTATATGGAGAAGTTTCCAAACTCACCTTCCTTCAAGCTTCCAATCTCCTGGCCTCCGTCAGCACCATAACAGACATCCGGGCCTTCACCCAAACCCTCAACCTCTTTCCTTACCACAAGATTCTCAAATAAACCAACCACCAACCCCAGTATCTCCATCATCCATCCTCTCCTACTGTCATACTTGAGCAAAGGATGagcttcagctgtatgtgtgtgtttgcgtatgtgtgtgtgtgcatgaatgggGCTAAACATGGGGATGGATGCAGGTCTTTAGAACATAAACATGACTTAAAGTACTCAGAATTGTGTGTATTTTATCAATATATCTGCAGTGTTATGTTTGTACTCAAATATTTCTAATGTTATGACACTGctgaaaaatatttgaatgaaATCGCTGGACTGCTTTTAATGTAGGCGGTTGAGGATTCGTAAGCATGCGAGAGCAATTTGATGATGCTTCTTTTATACTGCTCTACAGCATCACTCTGCATTTGGCACAACTTCAAACTGTAAAAACGAGGGACGGCTAATATCACTGCTTGAATTCAGAGtgtgcaaatatatttattaaaagcaTCGTAAAACTACTAATGGACTGTTTGCATTTTAGTATTTTCATTTCTGTTATGAAtcacttttgtgtgtgtggtcagttAAAATAATGAAAGCATTTCATCATTTTGGTatggttttgtttaatttatttattctttatattcTTTTTGAAGGGCATTTGAAAGTGGGATGGATTAAAATTGGTATgttaataaattactttattaaatgaaa
>TCONS_00031296
GGCTGACCCATCATCAGGAGGAAAGCAGACTGGAGACAGAAAGTCAGTATTGCTCTATTCAAGGCTGCGCGTGCGTTTCCCCTGTTTTACAGCAGAGTCATAAACAGCCCCGTTCACCTCAGCCCCAGTGCTAAAATAGCGTCATTGTTCAGGATGCCCCAGACAAACAAGTTCAAATGTGCTGCAGCCAGCAGTCCGGCTCAATCTGCTGGTCCTGACCGTGGGGAACCAGTCAGAGACCCCAACGCACCTCCAGGGGACAGTGGTGGAGATGAAAACCAGGGAGACCCTCAGATTATCAAATCACCCAGTGACCCCAAACAATACAGATATATTGAGCTGAGTAATGGACTGAGGGCTCTGCTCATCTCTGATCTGAGCGGTTTAGATGGGAAAGctgaagatgaggatgatgaagattCTGAAGAGGAGGAGGCGGAAGAGGAGGCAGAGGGAGAGGAAGAAGAGGGAGACTCGGGGGAAGGAACGGATGAGGAATCTGAAGAGGAAGGAGACAGTCAGGATAGCGATTTTGAGGAGCTAGATGAGGAAAGTgacca
>TCONS_00031297
ATGCCCCAGACAAACAAGTTCAAATGTGCTGCAGCCAGCAGTCCGGCTCAATCTGCTGGTCCTGACCGTGGGGAACCAGTCAGAGACCCCAACGCACCTCCAGGGGACAGTGGTGGAGATGAAAACCAGGGAGACCCTCAGATTATCAAATCACCCAGTGACCCCAAACAATACAGATATATTGAGCTGAGTAATGGACTGAGGGCTCTGCTCATCTCTGATCTGAGCGGTTTAGATGGGAAAGctgaagatgaggatgatgaagattCTGAAGAGGAGGAGGCGGAAGAGGAGGCAGAGGGAGAGGAAGAAGAGGGAGACTCGGGGGAAGGAACGGATGAGGAATCTGAAGAGGAAGGAGACAGTCAGGATAGCGATTTTGAGGAGCTAGATGAGGAAAGTgaccagaagaagaaaaaaggatCTGAAAAACAGTCAGCGGCAGCCCTTTGTATTGGGGTAGGGAGTTTCAGTGACCCTAATGATTTACCTGGCCTTGCACACTTCCTGGAGCACATGGTATTCATGGGCAGCGAAAAGTACCCTTCTGAAAATGGCTTTGATGCATTCCTAAAAAAGCACGGCGGCAGTGATAACGCTTCCACTGATTGTGAGAGAACCATTTTCCAATTTGACGTGCAGAGGAAACGCTTTAAAGAAGCCCTTGACAGATGGGCTCAGTTTTTCATATGTCCTCTTATGATTGAAGATGCCATTGATCGAGAGGTTGAGGCTGTGGACAGtgAATATCAGCTTGCCAAGCCGTCCGATTCTCACCGTAAGGAAATGCTCTTTGGCAGCCTCGCAAAGCCCGACCATCCTATGAGCAAATTCTGTTGGGGAAATGCACAGACCCTAAAGACCGAGCCTAAGGAGAAGAACATCAATGTTTACAAGAGACTCCGTGAGTTCTGGAAGAGGCACTACTCTGCCCACTATATGACCCTGGCAGTGCAGTCTAAAGAGAGTCTTGACACCCTTGAGGAATGGGTTAGAGAAATCTTTAGCCAGGTGCCCAACAATGGGCAGCTGAAGCCTGATTTTTCAGACAAGCTGAATCCCTTTGAAACTCCTGCCTTCAACAAACTTTACAGAGTGGTGCCTGTTAGAAAAGTGCATGCCCTCACTATCACATGGGCTCTACCACCTCAAGAAAAGCACTACAGGGTCAAACCTCTCCATTACATCGCTTGGCTGATTGGCCACGAGGGAACTGGAAGTATCCTGTCAATGCTTAGAAGAAAGTGCTGGGCTTTGGCTTTGTTTGGTGGAAACAGCGAAACCGGTTTTGATCAGAACACCACATATTCAATTTTTAGTATCTCCATCACACTGACCGACGAGGGCTTCCAGAACTTCTATGAGGTTGCTCATCTCGTCTTCCAGTACTTGAAAATGCTTCAGACTCTTGGGCCGCAACAGAGaATATATGAAGAAATTCAAAAGATTGAGGCTAATGAATTTCACTATCAGGAGCAGACTGATCCTATTGAGTATGTGGAGGACATTTGTGAAAACATGCAGTTGTTCCCAAAAGAGGACTTCTTAACAGGAGACCAGTTAATGTTCGAGTTCAAACCAGAGGTTATCTCTGCTGCATTGAACCTCCTCACACCAGAGAAGGCCAACTTGCTGCTTTTGTCCCCTGAGCATGAAGGCCAGTGCCCTCTTAGGGAAAAGTGGTTTGGGACTCAGTACAGCACAGAGGACATAGAGCAGCACTGGAGAGAGATCTGGGCAAAAGATTTCGATTTAAATCCCAGCCTTCACCTACCTGCTGAAAATAAGTTCATCGCCACTGATTTTGCCCTCAAGACCTCTGACTGTCCGGACACCGAATATCCTGTCAGAATAATGAACAATGACCGAGGATGTCTGTGGTACAAGAAGGACAACAAGTTCAAGATCCCCAAAGcataCGTGCGGTTCCATCTCATATCACCTGTGGTGCAGAAATCTCCAAAAAACCTGGTGCTTTTTGACTTGTTTGTGAATATCCTGGTTCACAACTTGGCCGAGCCGGCCTATGAGGCTGATGTGGCGCAGCTAGAATATAAACTGGTGGCCGGTGAACATGGCCTAGTCATTAAGGTTAAGGGCTTCAATCACAAACTACCGTTGCTGTTCAACCTGATTGTGGATTATCTTGCCGATTTCTCCGCCGCTCCTGATGTATTCAGCATGTTTGCAGAGCAGCTGAAGAAAACCTACTTTAACATCCTCATCAAGCCGGAGAAGCTTGGAAAGGACGTGAGGCTGCTGATTCTGGAGCACTCGCGCTGGTCCACCATTCAGAAGTACCAGGCTGTGCTGGACGGGCTTAGTGTGGATGAGCTAATGGAGTTTGTGAGTGGCTTCAAGTCTGAGCTTTATGCTGAAGGACTACTGCAGGGAAACGTCACTAGCACTGAATCCATGGGGTTTTTACAATATGTCACAGAAAAATTGCAGTTCAAGAAGTTGTCAGTAGAGGTCCCTGTTCTCTTCAGGGTTGTGGAGCTCCCTCAGAAACATCACCTCTGCAAAGTCAAGTCTCTCAATAAGGGGGATGCAAACTCTGAGGTCACTGTGTATTATCAGTCTGGTCCTAAGAACCTGCGTGAACACACTCTGATGGAGCTGCTTGTGATGCACATGGAGGAGCCGTGTTTTGACTTCCTCCGGACCAAAGAGACTCTGGGATATCACGTCTACCCAACCTGTAGAAACACATCAGGTGTTCTTGGATTCTCCGTAACAGTGGAAACACAGGCCACCAAGTTCAACACTGAACTAGTGGAGACAAAAATTGAGGAATTTCTGGTAAGCTTTGGAGAGAAGATGAACAGCCTGAGCGATGACGCCTTCAGGACACAGGTGACCGCTCTGGTCAAGCTGAAGGGCTGTGAAGACACTCATCTGGGCGAGGAGGTGGACAGGAACTGGACAGAGGTGGTCACGCAGCAGTACGTCTTCGACAGACTGAGCAGAGAGATTGATGCGCTGAAGCTCATGACCAAGGCTGAGCTGGTGAACTGGTTTATGGAGCATCGGGGTGAAGGCAACAGGAAGCTGAGTGTACATgttgTTGGCTACGGAGTAGAAGAAAACGACCCTCCCAATGATCCACATCCTGGAGAAGAAGAAGAGGCCAGCAAGATGTCATTATATGGAGAAGTTTCCAAACTCACCTTCCTTCAAGCTTCCAATCTCCTGGCCTCCGTCAGCACCATAACAGACATCCGGGCCTTCACCCAAACCCTCAACCTCTTTCCTTACCACAAGATTCTCAAATAA

Function

symbol description
nrd1a Predicted to enable metal ion binding activity and metallopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human NRDC (nardilysin convertase).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-417 Predicted to enable metal ion binding activity and metallopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human NRDC (nardilysin convertase).

Ensembl:

ensembl_id ENSDARG00000019596

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031295 False 4046 mRNA 0.46 31 36828243 36854500
TCONS_00031296 False 560 mRNA 0.52 3 36828258 36831491
TCONS_00031297 True 3276 mRNA 0.48 30 36828746 36853834

Neighbor

gene id symbol gene type direction distance location
XLOC_015713 dre-mir-2198 coding upstream 74485 36753649 ~ 36753758 (+)
XLOC_015712 NA coding upstream 84331 36742343 ~ 36743912 (+)
XLOC_015711 pdcd10b coding upstream 96280 36721357 ~ 36731963 (+)
XLOC_015710 golim4b coding upstream 106954 36701322 ~ 36721289 (+)
XLOC_015709 ptx3b coding upstream 133099 36691771 ~ 36695144 (+)
XLOC_015715 si:dkey-193b15.8 coding downstream 7973 36862473 ~ 36892883 (+)
XLOC_015716 rabgap1l2 coding downstream 44482 36898982 ~ 36905195 (+)
XLOC_015717 gadd45bb coding downstream 85249 36939749 ~ 36941988 (+)
XLOC_015718 slc1a8b coding downstream 256004 37110504 ~ 37122351 (+)
XLOC_015719 pex19 coding downstream 279781 37134281 ~ 37146572 (+)
XLOC_015707 NA non-coding upstream 185481 36638931 ~ 36642762 (+)
XLOC_015705 NA non-coding upstream 263770 36552692 ~ 36564473 (+)
XLOC_015704 NA non-coding upstream 357133 36379239 ~ 36471110 (+)
XLOC_015725 NA non-coding downstream 446908 37301408 ~ 37307571 (+)
XLOC_015733 NA non-coding downstream 972234 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 non-coding downstream 982119 37836619 ~ 37846849 (+)
XLOC_015737 LO017954.1 non-coding downstream 1071880 37926380 ~ 37927412 (+)
XLOC_015738 NA non-coding downstream 1113485 37967985 ~ 37971044 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G34632 NA unknown CI01000004 null 15011361 ~ 15025221 (-)