XLOC_015715 (si:dkey-193b15.8)


Basic Information

Item Value
gene id XLOC_015715
gene name si:dkey-193b15.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36862473 ~ 36892883 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031298
atcacacggGCTGTTGCTTCCTCCTGAGAGACCGTCGACACTCTCGCAGCCTGCACACTACAACCGCGCAATCTGGTAATGCCACTCAGTCATTGGCGGGCTCAGATATGCTATAACGCGCGGTTGTTCGGGATACTACGGAATTACAGCCGCAACAAATGATGATGTGACAGGCGTCCGGTAGATAATAAAAGCTCGCGGTGCAGTGGACGCGGCATTTCTGCTAACGAAGCAAAGCCTCAGACGAGCCTTTTCCAGATGAACAGATACAGTAGTGTTCACTACTGACTGACCGACAGCAGTCATTCGGAATAATACCTGCACCTCGCTTTACCAACATTCAAGGAGAAAAAACAGGTTTTAAGAAATTGTACTGTCGAGTGCCTGCAACCCATGAGCCGAGTGTTAGGAGAAACCACAGTTCAATCTCTCCATGTCCTGTCGTCCTCTCTGCTCTCTTCTAATGGTTTGATGGAGATCTGGTCGGATGACAGCTGGAACTGTTGTCATAACCGGAGGAATTCTCGCAACAGTGATACTCCTATGTATCATTGCAGTGCTTTGTTACTGTAGACTCCAGTATTACTGCTGTAAGAGGAATGAGTCAGAAGGGGAGGCGGGTTCGGTCGGAGATCCTCAACCACAGTTCGCCTGTAACGCATACAGTGCTCCGGGAGTGGACGGGGCGGCCGTTACACCTCTGTCCCTACCTTACGACCCCGCTCAGCCACACAGCTACTGCCCCACATGCTCACCCTACTACCTCCGCAGCTCGGATGAGATGCGAAACGGCGGCGAGCGTCTGTCTTACATGCCCACTCACTATGAGAACCACGGCGCTACTGCCCTTGGTCTGGCCGCTATGTACGGCCCCGTGCTGAGCCATCGCAGTACACCCGACTTTTACACCAATACACGAGCCATCAGCACTGACGTCTGATCCTCTCAGACCAGGAGATGGACCCCGGGGACAGAGCTTCTTCTGTGGACAAGAGCACTTGAGGCCGTGCCATCTCCATAAGCCAAGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-416 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FAM163A (family with sequence similarity 163 member A).

Ensembl:

ensembl_id ENSDARG00000077470

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031298 True 1028 mRNA 0.53 4 36862473 36892883

Neighbor

gene id symbol gene type direction distance location
XLOC_015714 nrd1a coding upstream 7973 36828243 ~ 36854500 (+)
XLOC_015713 dre-mir-2198 coding upstream 108715 36753649 ~ 36753758 (+)
XLOC_015712 NA coding upstream 118561 36742343 ~ 36743912 (+)
XLOC_015711 pdcd10b coding upstream 130510 36721357 ~ 36731963 (+)
XLOC_015710 golim4b coding upstream 141184 36701322 ~ 36721289 (+)
XLOC_015716 rabgap1l2 coding downstream 6099 36898982 ~ 36905195 (+)
XLOC_015717 gadd45bb coding downstream 46866 36939749 ~ 36941988 (+)
XLOC_015718 slc1a8b coding downstream 217621 37110504 ~ 37122351 (+)
XLOC_015719 pex19 coding downstream 241398 37134281 ~ 37146572 (+)
XLOC_015720 copa coding downstream 283931 37176814 ~ 37206080 (+)
XLOC_015707 NA non-coding upstream 219711 36638931 ~ 36642762 (+)
XLOC_015705 NA non-coding upstream 298000 36552692 ~ 36564473 (+)
XLOC_015704 NA non-coding upstream 391363 36379239 ~ 36471110 (+)
XLOC_015725 NA non-coding downstream 408525 37301408 ~ 37307571 (+)
XLOC_015733 NA non-coding downstream 933851 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 non-coding downstream 943736 37836619 ~ 37846849 (+)
XLOC_015737 LO017954.1 non-coding downstream 1033497 37926380 ~ 37927412 (+)
XLOC_015738 NA non-coding downstream 1075102 37967985 ~ 37971044 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_15048166_15051524 NA coding CI01000004 null 15048166 ~ 15052817 (+)