LOC122344976 (htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089)


Basic Information

Item Value
gene id LOC122344976
gene name htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4375803 ~ 4409270 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238659.1
CTTCCTCCCCGTTTCTTCAAGTTTTCCTCCGCCGCATCCGCGCGCAACTCGCCGCCGGAAAGCCCGAAGACACCCCCAGAGCCGCGCTCGCCTCAGCATGCGTTTGGCGCACGGAGCGCACTCCTGGCGAGCTCTTCGTCGTCGGGCGCAGGGATGATGTTCAACTCGTCGGGCTCGGCGGATTTCCTCTCGTTCGCTCACCCCGAGGCGGCGGCGGAAGTTCTCAATGGTTCCTCACACTTGTTCTACAACATCTCGATGGCCATGTGGAACAAATCCTGCGGGAAGTTGCTCGATTTCACCACGGCGGAGAAGATTGTCATCGGAATGATGCTGGCCGTCATCACCACCGTGACGGTGATTGGAAATATGCTGGTGGTGATCGCGGTGTGCGTCGTGAAGAAGCTCAGACAGCCGTCCAACTATCTGCTGGTGTCTCTGGCCGTGGCGGACCTCTCCGTGGCTATCGTGGTCATGCCTTTCGTGATCGTGACGGACCTCACGGGAGGAAAGTGGCTTTTTGGAGAGGTCTTCTGTAACATCTTCATCGGCATGGATGTGATGTGCTGCACTGCCTCCATCATGACGCTGTGCGTGATCAGTGTGGACAGGTATCTTGGCATCACCCGGCCGTTGACCTACCCTGCTCGACAAAACGGCCAGCTGATGGCGAAGATGATCTTTGGTGTGTGGCTCGTGTCCGCCTCCATCACCCTGCCGCCGTTCTGCGGCTGGGCGAAGAACGTGAACACGGCCGGCGTTTGTCTAATCAGCCAGGACTTCAGCTACACCATCTACTCCACCGCCGTGGCCTTCTACATCCCCATGATCGTCATGCTCTTCATGTACTACAAGATCTTCAAGGCCGCCAGAAAAAGCGGCGCCAAGCATCGCTTCACCGACTTCTCCCGTCGGGATCGTCTGGAGACCGTCGCCAGCGAGGCTCTCCGAATGCAAGGCCTAAAACCCCAACATACGCCTGGCGTAGCCGAGGAGTGCGCCGCTCTTTCTCGGCTGCTCAGCCGCGAGCGACAGAATATCTCCATCTTTAAGCGAGAGCAGAAAGCAGCTACGACGCTGGGCGTGATCGTCGGGGTTTTCGGTATTTGTTGGCTGCCGTTTTTCATTCTGTCAACAGCGAGACCATTTATATGCGGGGTCAAGTGTAGTTGCATACCAATATCTGAGAGGACGCTGCTGTGGTTTGGATATGCCAACTCGCTAATGAACCCCTTCATATACGCTTTCTTCAACCGGGACCTGCGCTCCACGTACAGAGACCTGCTCCGCTGCAGGTACCGGAACATAAACCGCCGGCTGTCGGCTGTAGGTGTGCATGAAGCACTGAAGGTTTAAAAGCACACACTTCAGAAAGGACTGAATCACTGTCAGTGGAGGAAGACTTTGAAGCAGAACCGTGTGCACTGATACGTCCACTTATGGGATTTTTGCAGCGACGGTGTGAACAAAAGACGGAATCAGAGCCATGTACTTATTCAGAACACTCATATTTCCATTGAGATGTTTGATCGCTAGTCATTTCGTTATTTGTAGCCTATACTGTATTACACCTGATTTCAGTGGGCTTTAAGATCTTCTACAATATTCAGTTGATTTTTGAGACATGCGAGTAAAGGTTTGACTcatttgaaaattattattattatcattatacactacttttaaaaagtttgtggtttttttttttttttaggaaattcattttttttt

Function

symbol description
htr7c Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to act upstream of or within several processes, including circadian rhythm; smooth muscle contraction; and vasoconstriction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in alcohol use disorder. Orthologous to human HTR7 (5-hydroxytryptamine receptor 7).

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 7-like

GO: NA

KEGG:

id description
K04163 HTR7; 5-hydroxytryptamine receptor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238659.1 True 1731 mRNA 0.52 4 4375803 4409270

Neighbor

gene id symbol gene type direction distance location
LOC122345408 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding upstream 434828 3903978 ~ 3940975 (+)
znrf3 znrf3,LOC107707852,LOC107656810,LOC107560969,LOC107755873,LOC107702225 coding upstream 627895 3677588 ~ 3747908 (+)
LOC122345442 NA coding upstream 725100 3623142 ~ 3650703 (+)
hspb8 hspb8,LOC107720866 coding upstream 756748 3610472 ~ 3619055 (+)
suds3 suds3,LOC107569732,LOC107708245 coding upstream 870600 3497249 ~ 3505203 (+)
chfr chfr,LOC107656818,LOC107548943,LOC107600128,LOC107672629 coding downstream 504059 4913329 ~ 4928533 (+)
ascc2 ascc2,LOC107707848,LOC107741258,LOC107600125,LOC107548944 coding downstream 592738 5002008 ~ 5008609 (+)
LOC122346032 hira,LOC107741257,LOC107707818,LOC107672596 coding downstream 604843 5014113 ~ 5026429 (+)
pgam5 pgam5,LOC107597303,LOC107684980,LOC107595915,LOC107672628 coding downstream 984529 5393799 ~ 5398332 (+)
LOC122346030 LOC107684986,LOC107741279,LOC107597300,LOC107672622,LOC107595956,LOC100535393 coding downstream 1094038 5503308 ~ 5547584 (+)
G33079 NA non-coding upstream 37805 4336372 ~ 4337998 (+)
G33077 NA non-coding upstream 46207 4328198 ~ 4329596 (+)
LOC122345412 NA non-coding upstream 92866 4256178 ~ 4282937 (+)
G33018 xbp1 non-coding upstream 712874 3659867 ~ 3662929 (+)
LOC122346010 NA non-coding upstream 722959 3651409 ~ 3652844 (+)
G33167 NA non-coding downstream 183326 4592596 ~ 4592852 (+)
G33182 NA non-coding downstream 493858 4903128 ~ 4903374 (+)
G33251 NA non-coding downstream 927079 5336349 ~ 5336636 (+)
G33257 NA non-coding downstream 959164 5368434 ~ 5370521 (+)
G33206 ankle2,LOC107729791,LOC107597302,LOC107672626,LOC107741250,LOC107684979,LOC107595914 non-coding downstream 992045 5401315 ~ 5402784 (+)
G33015 NA other upstream 231407 3605186 ~ 4144396 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other upstream 1032733 3328800 ~ 3343070 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other upstream 1726442 2627084 ~ 2649361 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other upstream 2107609 2265145 ~ 2268194 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other upstream 2356653 2010217 ~ 2019150 (+)
G33174 NA other downstream 213237 4622507 ~ 4623060 (+)
fbrsl1 LOC107656817,LOC107600129 other downstream 234831 4644101 ~ 4902403 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other downstream 1195063 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other downstream 1215997 5625267 ~ 5648047 (+)
tnpo1 tnpo1,LOC107700926,LOC107655929,LOC107596175 other downstream 1550562 5959832 ~ 5982816 (+)

Expression


Co-expression Network