pgam5 (pgam5,LOC107597303,LOC107684980,LOC107595915,LOC107672628)


Basic Information

Item Value
gene id pgam5
gene name pgam5,LOC107597303,LOC107684980,LOC107595915,LOC107672628
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5393799 ~ 5398332 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238773.1
GTAGCAGCGACAGCTTTTCGGAGATTTCCGGTTTCCAAATATATTCTCTCACGCACGGCGTAGGAAGAAAAACGCCTTTTTATCCAGCCTTGACGACGCACCAGCGAAGGGCTTGTTATTTTGCCTGACGTTGCGAGGAGAGAGGAAACGACAGCGCTTGCTAGCCAGGGTGACTCGGCGCGTCGTCGCTCCGAAGAGCAGCCGTGAACGTTACTCTCCGTTGACTCGTCTCTTTTGGCTCATGTCGTTCCGGAGAGCGCTCAGTCTCGCGTGCGGCGTCGCCGGCGGGTCCGCGGTGCTGGTGTGCGCGGCGGTCGCGGCGGATAAGCACGGCTACTTCGCTGACGGATGCCGGTTGAGAGACGCTTTGGCTGCCGTGCGTGCGGCGCAGCCTCCGGCGTGGCCCGCTGCGAACGGGTGGGATTACAACTGGGACAAACGTGACCCCTCATCTCCGGTGAATGGGAAGAGAAAGGAGAGCGTCGGTGAGAATGGAAGTCCGGACGCGGACAACAGCAAACCCAAAGCCACACGCCACATCTTCCTCATCAGACACTCCCAGTACAACCTCAAGGGGGACGGAGATAAAGAGAGGATCCTGACGGCGTTAGGACGGGAACAGGCCGAGTACACGGGACAGAGATTAGCGGCGCTGGGACTGAAGTACGACGTTCTCATCCACTCTTCAATGACCAGAGCTACCGAGACGGCCAGCATCATCAGCAAATACCTGCCAGGTGTGGAGCTCGTGAGCTGCGATTTGCTGCGAGAGGGTGCTCCGATCGAACCCGTCCCGCCGGTCACGCACTGGAAACCCGAGGCAGCGCAGTACCACGAGGACGGCGCTCGGATCGAGGCAGCGTTCCGCCGCTACATCCACCGAGCCGACCCCAAGCAGAAGGAGGACAGCTACGAGATCATCGTCTGTCATGCTAATGTCATCCGCTATTTTGTGTGCAGGTTTGTGTTCACTTGCTACTCCGTGCGGTCTCTCTTTTTGTGCTCTTTTGAAACGCTTAGCGAAACAAATAAGCATTTGGTGGAAACCACAGCAAGTCTATCCacggaaaaaaaactaaaacgatCGCGATCGGCCCTGCAGTTTCCTCCGGAGGGCTGGCTGAGGATGGGCCTGAACAACGGCAGCATCACCTGGCTGACGGTTCGACCCAGCGGCCGCGTGGCTCTCCGAGCGCTGGGAGACTCGGGCTTCATGCCTCCAGATAAACTCACTCGCACATGACGCTCTCAAGCTAGACCAGCATGCCTCAAAACAGCCTAGAACCTAAGGATAGTTGAGGTGGGCAGATGTTAGAGTTGCAAAGGatcaaaaaaaaccaaaaaaaaaaaaaccttaaatgtTCTCctgaaactttttattaaatgccgTTCGAGTcacaatatttcagaatatggATTTCATATTCATCAGCTCCACTAGCTTGTTTAATAAAAACCTTACATAGCTGCAATTTATGAGAATAAGTGACAATTTAATTTGCAACTCTACCATCTGTTGCTGTGAACAGTGACTCCACAAGTGTCTTGAGggtattgattttgtattttttaaaagcgaGCGAGTTAAGAATCATTGATGTTTCTTCAATTATACACTCCCGTGCCATGCTTCGTCTGATCTAAGGTGGAATTAACCAgcaagtgtacttttttttatgtttatgacgAGGTGTCTTTTTCCAGCTTTATGCAAACTCTGGAGGCCTCGCTGAGGCACTTGGTGTGTATTCGCACCGTTTACGATCGTTTTAGAATCAAGGTTTGAGTTTGGTAAAAATGTGAGAGGCTGAGGAGGACTCTGTAGAATTGTTtgtatgttgttgtttatggcagtaaaaattaattcattga
>XM_043238774.1
TAGCAGCGACAGCTTTTCGGAGATTTCCGGTTTCCAAATATATTCTCTCACGCACGGCGTAGGAAGAAAAACGCCTTTTTATCCAGCCTTGACGACGCACCAGCGAAGGGCTTGTTATTTTGCCTGACGTTGCGAGGAGAGAGGAAACGACAGCGCTTGCTAGCCAGGGTGACTCGGCGCGTCGTCGCTCCGAAGAGCAGCCGTGAACGTTACTCTCCGTTGACTCGTCTCTTTTGGCTCATGTCGTTCCGGAGAGCGCTCAGTCTCGCGTGCGGCGTCGCCGGCGGGTCCGCGGTGCTGGTGTGCGCGGCGGTCGCGGCGGATAAGCACGGCTACTTCGCTGACGGATGCCGGTTGAGAGACGCTTTGGCTGCCGTGCGTGCGGCGCAGCCTCCGGCGTGGCCCGCTGCGAACGGGTGGGATTACAACTGGGACAAACGTGACCCCTCATCTCCGGTGAATGGGAAGAGAAAGGAGAGCGTCGGTGAGAATGGAAGTCCGGACGCGGACAACAGCAAACCCAAAGCCACACGCCACATCTTCCTCATCAGACACTCCCAGTACAACCTCAAGGGGGACGGAGATAAAGAGAGGATCCTGACGGCGTTAGGACGGGAACAGGCCGAGTACACGGGACAGAGATTAGCGGCGCTGGGACTGAAGTACGACGTTCTCATCCACTCTTCAATGACCAGAGCTACCGAGACGGCCAGCATCATCAGCAAATACCTGCCAGGTGTGGAGCTCGTGAGCTGCGATTTGCTGCGAGAGGGTGCTCCGATCGAACCCGTCCCGCCGGTCACGCACTGGAAACCCGAGGCAGCGTACCACGAGGACGGCGCTCGGATCGAGGCAGCGTTCCGCCGCTACATCCACCGAGCCGACCCCAAGCAGAAGGAGGACAGCTACGAGATCATCGTCTGTCATGCTAATGTCATCCGCTATTTTGTGTGCAGGTTTGTGTTCACTTGCTACTCCGTGCGGTCTCTCTTTTTGTGCTCTTTTGAAACGCTTAGCGAAACAAATAAGCATTTGGTGGAAACCACAGCAAGTCTATCCacggaaaaaaaactaaaacgatCGCGATCGGCCCTGCAGTTTCCTCCGGAGGGCTGGCTGAGGATGGGCCTGAACAACGGCAGCATCACCTGGCTGACGGTTCGACCCAGCGGCCGCGTGGCTCTCCGAGCGCTGGGAGACTCGGGCTTCATGCCTCCAGATAAACTCACTCGCACATGACGCTCTCAAGCTAGACCAGCATGCCTCAAAACAGCCTAGAACCTAAGGATAGTTGAGGTGGGCAGATGTTAGAGTTGCAAAGGatcaaaaaaaaccaaaaaaaaaaaaaccttaaatgtTCTCctgaaactttttattaaatgccgTTCGAGTcacaatatttcagaatatggATTTCATATTCATCAGCTCCACTAGCTTGTTTAATAAAAACCTTACATAGCTGCAATTTATGAGAATAAGTGACAATTTAATTTGCAACTCTACCATCTGTTGCTGTGAACAGTGACTCCACAAGTGTCTTGAGggtattgattttgtattttttaaaagcgaGCGAGTTAAGAATCATTGATGTTTCTTCAATTATACACTCCCGTGCCATGCTTCGTCTGATCTAAGGTGGAATTAACCAgcaagtgtacttttttttatgtttatgacgAGGTGTCTTTTTCCAGCTTTATGCAAACTCTGGAGGCCTCGCTGAGGCACTTGGTGTGTATTCGCACCGTTTACGATCGTTTTAGAATCAAGGTTTGAGTTTGGTAAAAATGTGAGAGGCTGAGGAGGACTCTGTAGAATTGTTtgtatgttgttgtttatggcagtaaaaattaattcattga
>XM_043238775.1
GCGACAGCTTTTCGGAGATTTCCGGTTTCCAAATATATTCTCTCACGCACGGCGTAGGAAGAAAAACGCCTTTTTATCCAGCCTTGACGACGCACCAGCGAAGGGCTTGTTATTTTGCCTGACGTTGCGAGGAGAGAGGAAACGACAGCGCTTGCTAGCCAGGGTGACTCGGCGCGTCGTCGCTCCGAAGAGCAGCCGTGAACGTTACTCTCCGTTGACTCGTCTCTTTTGGCTCATGTCGTTCCGGAGAGCGCTCAGTCTCGCGTGCGGCGTCGCCGGCGGGTCCGCGGTGCTGGTGTGCGCGGCGGTCGCGGCGGATAAGCACGGCTACTTCGCTGACGGATGCCGGTTGAGAGACGCTTTGGCTGCCGTGCGTGCGGCGCAGCCTCCGGCGTGGCCCGCTGCGAACGGGTGGGATTACAACTGGGACAAACGTGACCCCTCATCTCCGGTGAATGGGAAGAGAAAGGAGAGCGTCGGTGAGAATGGAAGTCCGGACGCGGACAACAGCAAACCCAAAGCCACACGCCACATCTTCCTCATCAGACACTCCCAGTACAACCTCAAGGGGGACGGAGATAAAGAGAGGATCCTGACGGCGTTAGGACGGGAACAGGCCGAGTACACGGGACAGAGATTAGCGGCGCTGGGACTGAAGTACGACGTTCTCATCCACTCTTCAATGACCAGAGCTACCGAGACGGCCAGCATCATCAGCAAATACCTGCCAGGTGTGGAGCTCGTGAGCTGCGATTTGCTGCGAGAGGGTGCTCCGATCGAACCCGTCCCGCCGGTCACGCACTGGAAACCCGAGGCAGCGCAGTACCACGAGGACGGCGCTCGGATCGAGGCAGCGTTCCGCCGCTACATCCACCGAGCCGACCCCAAGCAGAAGGAGGACAGCTACGAGATCATCGTCTGTCATGCTAATGTCATCCGCTATTTTGTGTGCAGGGCCCTGCAGTTTCCTCCGGAGGGCTGGCTGAGGATGGGCCTGAACAACGGCAGCATCACCTGGCTGACGGTTCGACCCAGCGGCCGCGTGGCTCTCCGAGCGCTGGGAGACTCGGGCTTCATGCCTCCAGATAAACTCACTCGCACATGACGCTCTCAAGCTAGACCAGCATGCCTCAAAACAGCCTAGAACCTAAGGATAGTTGAGGTGGGCAGATGTTAGAGTTGCAAAGGatcaaaaaaaaccaaaaaaaaaaaaaccttaaatgtTCTCctgaaactttttattaaatgccgTTCGAGTcacaatatttcagaatatggATTTCATATTCATCAGCTCCACTAGCTTGTTTAATAAAAACCTTACATAGCTGCAATTTATGAGAATAAGTGACAATTTAATTTGCAACTCTACCATCTGTTGCTGTGAACAGTGACTCCACAAGTGTCTTGAGggtattgattttgtattttttaaaagcgaGCGAGTTAAGAATCATTGATGTTTCTTCAATTATACACTCCCGTGCCATGCTTCGTCTGATCTAAGGTGGAATTAACCAgcaagtgtacttttttttatgtttatgacgAGGTGTCTTTTTCCAGCTTTATGCAAACTCTGGAGGCCTCGCTGAGGCACTTGGTGTGTATTCGCACCGTTTACGATCGTTTTAGAATCAAGGTTTGAGTTTGGTAAAAATGTGAGAGGCTGAGGAGGACTCTGTAGAATTGTTtgtatgttgttgtttatggcagtaaaaattaattcattga
>XM_043238776.1
GCGACAGCTTTTCGGAGATTTCCGGTTTCCAAATATATTCTCTCACGCACGGCGTAGGAAGAAAAACGCCTTTTTATCCAGCCTTGACGACGCACCAGCGAAGGGCTTGTTATTTTGCCTGACGTTGCGAGGAGAGAGGAAACGACAGCGCTTGCTAGCCAGGGTGACTCGGCGCGTCGTCGCTCCGAAGAGCAGCCGTGAACGTTACTCTCCGTTGACTCGTCTCTTTTGGCTCATGTCGTTCCGGAGAGCGCTCAGTCTCGCGTGCGGCGTCGCCGGCGGGTCCGCGGTGCTGGTGTGCGCGGCGGTCGCGGCGGATAAGCACGGCTACTTCGCTGACGGATGCCGGTTGAGAGACGCTTTGGCTGCCGTGCGTGCGGCGCAGCCTCCGGCGTGGCCCGCTGCGAACGGGTGGGATTACAACTGGGACAAACGTGACCCCTCATCTCCGGTGAATGGGAAGAGAAAGGAGAGCGTCGGTGAGAATGGAAGTCCGGACGCGGACAACAGCAAACCCAAAGCCACACGCCACATCTTCCTCATCAGACACTCCCAGTACAACCTCAAGGGGGACGGAGATAAAGAGAGGATCCTGACGGCGTTAGGACGGGAACAGGCCGAGTACACGGGACAGAGATTAGCGGCGCTGGGACTGAAGTACGACGTTCTCATCCACTCTTCAATGACCAGAGCTACCGAGACGGCCAGCATCATCAGCAAATACCTGCCAGGTGTGGAGCTCGTGAGCTGCGATTTGCTGCGAGAGGGTGCTCCGATCGAACCCGTCCCGCCGGTCACGCACTGGAAACCCGAGGCAGCGTACCACGAGGACGGCGCTCGGATCGAGGCAGCGTTCCGCCGCTACATCCACCGAGCCGACCCCAAGCAGAAGGAGGACAGCTACGAGATCATCGTCTGTCATGCTAATGTCATCCGCTATTTTGTGTGCAGGGCCCTGCAGTTTCCTCCGGAGGGCTGGCTGAGGATGGGCCTGAACAACGGCAGCATCACCTGGCTGACGGTTCGACCCAGCGGCCGCGTGGCTCTCCGAGCGCTGGGAGACTCGGGCTTCATGCCTCCAGATAAACTCACTCGCACATGACGCTCTCAAGCTAGACCAGCATGCCTCAAAACAGCCTAGAACCTAAGGATAGTTGAGGTGGGCAGATGTTAGAGTTGCAAAGGatcaaaaaaaaccaaaaaaaaaaaaaccttaaatgtTCTCctgaaactttttattaaatgccgTTCGAGTcacaatatttcagaatatggATTTCATATTCATCAGCTCCACTAGCTTGTTTAATAAAAACCTTACATAGCTGCAATTTATGAGAATAAGTGACAATTTAATTTGCAACTCTACCATCTGTTGCTGTGAACAGTGACTCCACAAGTGTCTTGAGggtattgattttgtattttttaaaagcgaGCGAGTTAAGAATCATTGATGTTTCTTCAATTATACACTCCCGTGCCATGCTTCGTCTGATCTAAGGTGGAATTAACCAgcaagtgtacttttttttatgtttatgacgAGGTGTCTTTTTCCAGCTTTATGCAAACTCTGGAGGCCTCGCTGAGGCACTTGGTGTGTATTCGCACCGTTTACGATCGTTTTAGAATCAAGGTTTGAGTTTGGTAAAAATGTGAGAGGCTGAGGAGGACTCTGTAGAATTGTTtgtatgttgttgtttatggcagtaaaaattaattcattga
>XM_043238777.1
GACAGCTTTTCGGAGATTTCCGGTTTCCAAATATATTCTCTCACGCACGGCGTAGGAAGAAAAACGCCTTTTTATCCAGCCTTGACGACGCACCAGCGAAGGGCTTGTTATTTTGCCTGACGTTGCGAGGAGAGAGGAAACGACAGCGCTTGCTAGCCAGGGTGACTCGGCGCGTCGTCGCTCCGAAGAGCAGCCGTGAACGTTACTCTCCGTTGACTCGTCTCTTTTGGCTCATGTCGTTCCGGAGAGCGCTCAGTCTCGCGTGCGGCGTCGCCGGCGGGTCCGCGGTGCTGGTGTGCGCGGCGGTCGCGGCGGATAAGCACGGCTACTTCGCTGACGGATGCCGGTTGAGAGACGCTTTGGCTGCCGTGCGTGCGGCGCAGCCTCCGGCGTGGCCCGCTGCGAACGGGTGGGATTACAACTGGGACAAACGTGACCCCTCATCTCCGGTGAATGGGAAGAGAAAGGAGAGCGTCGGTGAGAATGGAAGTCCGGACGCGGACAACAGCAAACCCAAAGCCACACGCCACATCTTCCTCATCAGACACTCCCAGTACAACCTCAAGGGGGACGGAGATAAAGAGAGGATCCTGACGGCGTTAGGACGGGAACAGGCCGAGTACACGGGACAGAGATTAGCGGCGCTGGGACTGAAGTACGACGTTCTCATCCACTCTTCAATGACCAGAGCTACCGAGACGGCCAGCATCATCAGCAAATACCTGCCAGGTGTGGAGCTCGTGAGCTGCGATTTGCTGCGAGAGGGTGCTCCGATCGAACCCGTCCCGCCGGTCACGCACTGGAAACCCGAGGCAGCGGGCCCTGCAGTTTCCTCCGGAGGGCTGGCTGAGGATGGGCCTGAACAACGGCAGCATCACCTGGCTGACGGTTCGACCCAGCGGCCGCGTGGCTCTCCGAGCGCTGGGAGACTCGGGCTTCATGCCTCCAGATAAACTCACTCGCACATGACGCTCTCAAGCTAGACCAGCATGCCTCAAAACAGCCTAGAACCTAAGGATAGTTGAGGTGGGCAGATGTTAGAGTTGCAAAGGatcaaaaaaaaccaaaaaaaaaaaaaccttaaatgtTCTCctgaaactttttattaaatgccgTTCGAGTcacaatatttcagaatatggATTTCATATTCATCAGCTCCACTAGCTTGTTTAATAAAAACCTTACATAGCTGCAATTTATGAGAATAAGTGACAATTTAATTTGCAACTCTACCATCTGTTGCTGTGAACAGTGACTCCACAAGTGTCTTGAGggtattgattttgtattttttaaaagcgaGCGAGTTAAGAATCATTGATGTTTCTTCAATTATACACTCCCGTGCCATGCTTCGTCTGATCTAAGGTGGAATTAACCAgcaagtgtacttttttttatgtttatgacgAGGTGTCTTTTTCCAGCTTTATGCAAACTCTGGAGGCCTCGCTGAGGCACTTGGTGTGTATTCGCACCGTTTACGATCGTTTTAGAATCAAGGTTTGAGTTTGGTAAAAATGTGAGAGGCTGAGGAGGACTCTGTAGAATTGTTtgtatgttgttgtttatggcagtaaaaattaattcattga

Function

symbol description
pgam5 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in peptidyl-threonine dephosphorylation and positive regulation of mitochondrial fission. Predicted to act upstream of or within programmed cell death. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human PGAM5 (PGAM family member 5, mitochondrial serine/threonine protein phosphatase).

NR:

description
PREDICTED: serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15637 PGAM5; serine/threonine-protein phosphatase PGAM5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238773.1 True 1872 mRNA 0.51 6 5393799 5398332
XM_043238774.1 False 1868 mRNA 0.51 6 5393800 5398332
XM_043238775.1 False 1734 mRNA 0.52 6 5393805 5398332
XM_043238776.1 False 1731 mRNA 0.52 6 5393805 5398332
XM_043238777.1 False 1598 mRNA 0.51 5 5393807 5398332

Neighbor

gene id symbol gene type direction distance location
LOC122346032 hira,LOC107741257,LOC107707818,LOC107672596 coding upstream 367370 5014113 ~ 5026429 (+)
ascc2 ascc2,LOC107707848,LOC107741258,LOC107600125,LOC107548944 coding upstream 385190 5002008 ~ 5008609 (+)
chfr chfr,LOC107656818,LOC107548943,LOC107600128,LOC107672629 coding upstream 465266 4913329 ~ 4928533 (+)
LOC122344976 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding upstream 984529 4375803 ~ 4409270 (+)
LOC122345408 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding upstream 1452824 3903978 ~ 3940975 (+)
LOC122346030 LOC107684986,LOC107741279,LOC107597300,LOC107672622,LOC107595956,LOC100535393 coding downstream 104976 5503308 ~ 5547584 (+)
atp8b5a LOC107684987,LOC107741246,LOC107672607,LOC107595921,LOC105889921 coding downstream 150505 5548837 ~ 5570088 (+)
rusc2 rusc2,LOC107752133,LOC107684988,LOC107741245,LOC107595920,LOC107672606,LOC107597340 coding downstream 173979 5572311 ~ 5593179 (+)
acacb NA coding downstream 196763 5595095 ~ 5620700 (+)
ube3b ube3b,LOC107654616,LOC107752137,LOC107597296,LOC107595925,LOC107741240,LOC107672623 coding downstream 255243 5653575 ~ 5666827 (+)
G33257 NA non-coding upstream 23278 5368434 ~ 5370521 (+)
G33251 NA non-coding upstream 57163 5336349 ~ 5336636 (+)
G33182 NA non-coding upstream 490425 4903128 ~ 4903374 (+)
G33167 NA non-coding upstream 800947 4592596 ~ 4592852 (+)
G33079 NA non-coding upstream 1055801 4336372 ~ 4337998 (+)
G33206 ankle2,LOC107729791,LOC107597302,LOC107672626,LOC107741250,LOC107684979,LOC107595914 non-coding downstream 2983 5401315 ~ 5402784 (+)
LOC122346031 NA non-coding downstream 57765 5456097 ~ 5468031 (+)
G33348 NA non-coding downstream 70740 5469072 ~ 5539398 (+)
G33454 NA non-coding downstream 419088 5817420 ~ 5870510 (+)
G33453 NA non-coding downstream 460958 5859290 ~ 5880529 (+)
fbrsl1 LOC107656817,LOC107600129 other upstream 491396 4644101 ~ 4902403 (+)
G33174 NA other upstream 770739 4622507 ~ 4623060 (+)
G33015 NA other upstream 1249403 3605186 ~ 4144396 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other upstream 2050729 3328800 ~ 3343070 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other upstream 2744438 2627084 ~ 2649361 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other downstream 206001 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other downstream 226935 5625267 ~ 5648047 (+)
tnpo1 tnpo1,LOC107700926,LOC107655929,LOC107596175 other downstream 561500 5959832 ~ 5982816 (+)
G33494 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 other downstream 688930 6087262 ~ 6088562 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other downstream 849463 6247795 ~ 6255340 (+)

Expression


Co-expression Network