LOC122345408 (htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089)


Basic Information

Item Value
gene id LOC122345408
gene name htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3903978 ~ 3940975 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239519.1
CGCATCCGCGCGCAACTCGCCGCCGGAAAGCCCGAAGACACCCCCAGAGCCGCGCTCGCCTCAGCATGCGTTTGGCGCACGGAGCGCACTCCTGGCGAGCTCTTCGTCGTCGGGCGCAGGGATGATGTTCAACTCGTCGGGCTCGGCGGATTTCCTCTCGTTCGCTCACCCCGAGGCGGCGGCGGAAGTTCTCAATGGTTCCTCACACTTGTTCTACAACATCTCGATGGCCATGTGGAACAAATCCTGCGGGGAACAGTTGCTCGATTTCACCACGGCGGAGAAGATTGTCATCGGAATGATGCTGGCCGTCATCACCACCGTGACGGTGATTGGAAATATGCTGGTGGTGATCGCGGTGTGCGTCGTGAAGAAGCTCAGACAGCCGTCCAACTATCTGCTGGTGTCTCTGGCCGTGGCGGACCTCTCCGTGGCTATCGTGGTCATGCCTTTCGTGATCGTGACGGACCTCACGGGAGGAAAGTGGCTTTTTGGAGAGGTCTTCTGTAACATCTTCATCGGCATGGATGTGATGTGCTGCACTGCCTCCATCATGACGCTGTGCGTGATCAGTGTGGACAGGTATCTTGGCATCACGCCGTTGACCTACCCTGCTCGACAAAGCCAGCTGATGGCGAAGATGATCTTTGGTGTGTGGCTCGTGTCCGCCTCCATCACCCTGCCGCCGTTCTGCGGCTGGGCGAAGAACGTGAACACGGCCGGCGTTTGTCTAATCAGCCAGGACTTCAGCTACACCATCTACTCCACCGCCGTGGCCTTCTACATCCCCATGATCGTCATGCTCTTCATGTACTACAAGATCTTCAAGGCCGCCAGAAAAAGCGGCGCCAAGCATCGCTTCACCGACTTCTCCCGTCGGGATCGTCTGGAGACCGTCGCCAGCGAGGCTCTCCGAATGCAAGGCCTAAAACCCCAACATACGCCTGGCGTAGCCGAGGAGTGCGCCGCTCTTTCTCGGCTGCTCAGCCGCGAGCGACAGAATATCTCCATCTTTAAGCGAGAGCAGAAAGCAGCTACGACGCTGGGCGTGATCGTCGGGGTTTTCGGTATTTGTTGGCTGCCGTTTTTCATTCTGTCAACAGCGAGACCATTTATATGCGGGGTCAAGTGTAGTTGCATACCAATATGGCTGGAGAGGACGCTGCTGTGGTTTGGATATGCCAACTCGCTAATGAACCCCTTCATATACGCTTTCTTCAACCGGGACCTGCGCTCCACGTACAGAGACCTGCTCCGCTGCAGGTACCGGAACATAAACCGCCGGCTGTCGGCTGTAGGTGTGCATGAAGCACTGAAGGTTTAAAAGCACACACTTCAGAAAGGACTGAATCACTGTCAGTGGAGGAAGACTTTGAAGCAGAACCG

Function

symbol description
htr7c Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to act upstream of or within several processes, including circadian rhythm; smooth muscle contraction; and vasoconstriction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in alcohol use disorder. Orthologous to human HTR7 (5-hydroxytryptamine receptor 7).

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 7-like

GO: NA

KEGG:

id description
K04163 HTR7; 5-hydroxytryptamine receptor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239519.1 True 1386 mRNA 0.57 4 3903978 3940975

Neighbor

gene id symbol gene type direction distance location
znrf3 znrf3,LOC107707852,LOC107656810,LOC107560969,LOC107755873,LOC107702225 coding upstream 156070 3677588 ~ 3747908 (+)
LOC122345442 NA coding upstream 253275 3623142 ~ 3650703 (+)
hspb8 hspb8,LOC107720866 coding upstream 284923 3610472 ~ 3619055 (+)
suds3 suds3,LOC107569732,LOC107708245 coding upstream 398775 3497249 ~ 3505203 (+)
pebp1 pebp1 coding upstream 481834 3417904 ~ 3422144 (+)
LOC122344976 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding downstream 434828 4375803 ~ 4409270 (+)
chfr chfr,LOC107656818,LOC107548943,LOC107600128,LOC107672629 coding downstream 972354 4913329 ~ 4928533 (+)
ascc2 ascc2,LOC107707848,LOC107741258,LOC107600125,LOC107548944 coding downstream 1061033 5002008 ~ 5008609 (+)
LOC122346032 hira,LOC107741257,LOC107707818,LOC107672596 coding downstream 1073138 5014113 ~ 5026429 (+)
pgam5 pgam5,LOC107597303,LOC107684980,LOC107595915,LOC107672628 coding downstream 1452824 5393799 ~ 5398332 (+)
G33018 xbp1 non-coding upstream 241049 3659867 ~ 3662929 (+)
LOC122346010 NA non-coding upstream 251134 3651409 ~ 3652844 (+)
G32992 NA non-coding upstream 397268 3505648 ~ 3506710 (+)
G32956 NA non-coding upstream 514491 3388301 ~ 3389487 (+)
G32955 NA non-coding upstream 516250 3387494 ~ 3387728 (+)
LOC122345412 NA non-coding downstream 315203 4256178 ~ 4282937 (+)
G33077 NA non-coding downstream 387223 4328198 ~ 4329596 (+)
G33079 NA non-coding downstream 395397 4336372 ~ 4337998 (+)
G33167 NA non-coding downstream 651621 4592596 ~ 4592852 (+)
G33182 NA non-coding downstream 962153 4903128 ~ 4903374 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other upstream 560908 3328800 ~ 3343070 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other upstream 1254617 2627084 ~ 2649361 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other upstream 1635784 2265145 ~ 2268194 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other upstream 1884828 2010217 ~ 2019150 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other upstream 1998479 1900627 ~ 1905499 (+)
G33174 NA other downstream 681532 4622507 ~ 4623060 (+)
fbrsl1 LOC107656817,LOC107600129 other downstream 703126 4644101 ~ 4902403 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other downstream 1663358 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other downstream 1684292 5625267 ~ 5648047 (+)
tnpo1 tnpo1,LOC107700926,LOC107655929,LOC107596175 other downstream 2018857 5959832 ~ 5982816 (+)

Expression


Co-expression Network