LOC122346032 (hira,LOC107741257,LOC107707818,LOC107672596)


Basic Information

Item Value
gene id LOC122346032
gene name hira,LOC107741257,LOC107707818,LOC107672596
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5014113 ~ 5026429 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240682.1
CGAACTTCCGGCGTGACTTCACGTGACTTCAGCTTCACGCTCGCGGagtgatgagagagagagagagcgagagggggagagagagatagacatgGAGTTCAACTGAGACCAACAAAGTAACGGATGAGCCGCGGCACTTAAACGGCGCTGGGAACGATTCTCCTCGGGAGCGCGGAGGGAGATCGCGGCTTGCGAACGGCGGGTTTATAATTGATCGGCGTGAAGATGAAGCTCTTGAAGCCGAGTTGGGTCAATCACAATGGTAAACCGATATTCTCAGTTGACATCCATCCAGATGGAACCAAGTTTGCCACAGGTGGCcaagGTGAGGATTCTGGGAAAGTGGTCATTTGGAACATGGCCCCGGTTCTTCGAGAGGAGGATGAGAAGAACGAGAACGTTCCCAAATTGCTTTGTCAGATGGACAATCACTTAGCGTGCGTGAATTGCGTGCGCTGGTCGAATAATGGCTTATACCTGGCGTCAGGAGGAGACGACAAACTGGTCATGGTGTGGAAGAGAGCTGCTTTCATAGGTCCAAGCACGGTGTTTGGGTCCAGCAGTAAACTGGCTAATGTGGAACAGTGGAGGTGCGTCACCATTCTGAGGAACCACACGGGAGACGTAATGGATGTGGCCTGGTCACCTCATGATGTCTGGCTGGCGTCCTGCAGCGTGGATAACACCATCGTTATATGGAACGCTCGAAAATTTCCAGAGATTGTAGTGACCTTAAAGGGACACACAGGGCTGGTCAAAGGCCTGACGTGGGACCCTGTTGGAAAGTACATCGCTTCCCAGGCAGATGACCATAGCCTGAAGGTCTGGAGGACCATGGACTGGCAGCTGGAGACCAACATCACCAAACCCTTCAGTGAATGTGGCGGCACCACGCACGTCCTGAGGCTGAGCTGGTCTCCAGATGGCCAGTACCTGGTTTCGGCTCATGCCATGAATAATTCTGGGCCCACAGCTCAGATCATCGAACGCGACGGCTGGAAGACCAACATGGACTTCGTGGGTCATCGGAAAGCCGTTACCGTGGTGAAGTTCAATCCTAAGATCTTtaagaagaaacagaagaatGGTAGTACACCCAAACCCAGCTGTCCGTACTGCTGCTGTGCTGTGGGTAGTAAGGACCGCTCGCTCTCTGTATGGCTCACCTCACTCAAGCGCCCACTGGTAGTCATCCATGACCTCTTCGATAAATCAATTATGGATATTACATGGACACTCAATGGGCTGGGACTACTGGTGTGCTCCATGGATGGCACTGTGGCCTTCTTGGATTTCTCGCAGGACGAACTGGGAGATCCCTTGAATGAAGAAGAGAAGAACGCTATTCATCAGAACATCTACGGAAAGAGTCTGGCCATCACGATGGAGTCTCAACTTTCCAGCACAATCATTGAGAACCCAGAAATGCTGAAGTATCAGCAGGAACGGCAGGGGAACCAGAACCCAAATGGAGCCCAGGGAAGCGGTCCTGAGAACCAGACTCCCAAACTTACCAATGTGCTCAACGGAGAGTCCCTGGAGGACATCAGAAAGAACCTCTTAAAGAAGCAGGTGGAGACCAGAACTGCAGATGGAAGGAGAAGAATCACACCTCTATGCATCGCACAGCTCGACACGGGGGACTTCTCACCGGCGCTGTTCAACAGCGTCCCGATCTTGCCGGGGTCGTCTGCGTCGACTCAGCTCACCCCTCAGATCTCTTCAGATTCCAGTACGGCCAACTCGCTTGGCCTGCGACCCTCACATGACCCCACCACCACCTCTCCTAACAAAACCGCAGAAGACAACAAGGACGGcgTAACCGCAGCTGTGAACTCGATCGGGATGAAATCGAATCTGCTGTTGACTTCTGCCTCCAAGATCGAGCCCATGAAAGCGCTAGATTCGCGATTTACCGAAAGGTCAAAAGCCACGCCGGGGGTCACTAGCGTACCCCTCACTATAGGCATCACCCCACTTGACAGGTCAAAAGACAGCTCTGTGAAGGAGCCGAAAGTAAAAGATGAGACGAGCAGCGACAGCGAGGACAAGATCATGGTGAAGTCACTATCTATGGCCAAGAGGAagggagagatggagggagCGGAGGTGGTGGAGAAGAGGAAGAAGGGAAGGCCGAGGAAAGATGCCAAAATGATGCCTGTATCGCAGCCCTTCCCAcagACTCCAGTCTCAGTGGAAAAGGAGCCGTCCCGATTAACGACACCCGTAGCAGTGTTAAAACTTCccaccccatccatacagaaatCATTCAGCACTCAGGTGAGCACAGACGGAGTGGCGTATCTGGAGGTGGAGAACGAGGTCTCTGTGGTGTCTGGATCTCGTCTGAGTCAGCTCAAATGGAGCAGAGAGGGCCGAGAATGGGACACGCTGCTGCCCAGCCGCATCGTCATCGCGACCGGCAGCAGCGACGTCGTTGCTGTGTGCTGCGAGGACCGCACGCTCTCGGTCTTCACGACGTGCGGACGGAGGCTGATTCCATCCATCATGCTGCCCGGCCCCATCTCGGCGCTTCACTGCTCGGGACACTTTGTCATGGCGCTGACCGCATCAGCCACGCTGTCTGTCTGGGATGTTCAAAAACAGACAGCTTTGGTCAAAAATGAATCTCTGAATCCAATCTTGTCAgGCACAGATGCTACAGTAAGTCGGTCTTTTTTGACTCAGCAAGGTGTAGCTGTGGTGTCGctgtcaaatggaaaaacatacTGCTTTAACTCATCGCTGGAGACCTGGAATTTGATCGCAGATAAGCAGGACTCTCTTATACAGTGCGCAGACTTCCGCAATTGCGTGTCCTCTCAGGATGTTCTGGGCTCCATGGGGCCACTGGCCCTAACACAGGGCCGAAATCTAAGTGCGGGGCGGTTGGCATCTCGCTTGTCATCAACTCCTCACCACTTGCAGCAGGGAATGACTCTGGCCTTCCTGGAGAACCAGCTCTCCTCCGCCCTCATCCTCCTCTCAGCAAGCGAGTACAGGCACTGGCTTCTCATCTACGCACGTTTCCTCGTAAATGAAGGTTATGAGCAGCGGTTAAGAGAACTGTGTCAGGATTTACTAGGACCCGTTCACAAATCCAGCAGCAGCTCCTGGGAGCCTACAGTCCTGGGACTGAGAAAGAGGGATCTGTTGACGGAGGTGCTGCCTGTGATTGGTCAGAACTTGCGGTTCCAGAGACTCTTCACGGAGTACCAGGATCAGCTCGAATTGCTGCGTTTGAAATagcacttcactttttttttttttgtttttttgatgtttCACATCTGACCACTTCCTGGCCTGTACATGTGCTAACGGTCTGCCGTAGCTTTACTGACAGCACTATCTTTAAAGCAGACATGGACACtaataaaaatggacaaaaatattttttttttttaaagaaataatttgttaaatacatttattaattatgtttgtAAACTTTGTGCCGGTGGTAGAAAAGAACGGGTTAACTCACTTTTTGGGATAATTTTGATCAAGCACAAAGTTTGCATGGCAGTCATCTTAAAACTGGACATTTTTACGTCTAAACTCTAAAAGTTGCTGTAAGTGGTGTAACaactctctccctccctcctttctttctttggGCTTTTTCTTTCAGTTCTAATTTGTACAGCCActtgtcatttatttgtaaatgtttgtaaaaggcaatttctttttttctccgttttctataaaatgaagaaaatggtaaaccttcaatttaaaaaaggaataaacgATTTACCAATTCTAAAA

Function

symbol description
hira Predicted to contribute to nucleosome binding activity. Predicted to be involved in DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin organization; regulation of transcription, DNA-templated; and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of HIR complex. Orthologous to human HIRA (histone cell cycle regulator).

NR:

description
PREDICTED: protein HIRA-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11293 HIRA, HIR1; protein HIRA/HIR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240682.1 True 3777 mRNA 0.50 25 5014113 5026429

Neighbor

gene id symbol gene type direction distance location
ascc2 ascc2,LOC107707848,LOC107741258,LOC107600125,LOC107548944 coding upstream 5504 5002008 ~ 5008609 (+)
chfr chfr,LOC107656818,LOC107548943,LOC107600128,LOC107672629 coding upstream 85580 4913329 ~ 4928533 (+)
LOC122344976 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding upstream 604843 4375803 ~ 4409270 (+)
LOC122345408 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding upstream 1073138 3903978 ~ 3940975 (+)
znrf3 znrf3,LOC107707852,LOC107656810,LOC107560969,LOC107755873,LOC107702225 coding upstream 1266205 3677588 ~ 3747908 (+)
pgam5 pgam5,LOC107597303,LOC107684980,LOC107595915,LOC107672628 coding downstream 367370 5393799 ~ 5398332 (+)
LOC122346030 LOC107684986,LOC107741279,LOC107597300,LOC107672622,LOC107595956,LOC100535393 coding downstream 476879 5503308 ~ 5547584 (+)
atp8b5a LOC107684987,LOC107741246,LOC107672607,LOC107595921,LOC105889921 coding downstream 522408 5548837 ~ 5570088 (+)
rusc2 rusc2,LOC107752133,LOC107684988,LOC107741245,LOC107595920,LOC107672606,LOC107597340 coding downstream 545882 5572311 ~ 5593179 (+)
acacb NA coding downstream 568666 5595095 ~ 5620700 (+)
G33182 NA non-coding upstream 110739 4903128 ~ 4903374 (+)
G33167 NA non-coding upstream 421261 4592596 ~ 4592852 (+)
G33079 NA non-coding upstream 676115 4336372 ~ 4337998 (+)
G33077 NA non-coding upstream 684517 4328198 ~ 4329596 (+)
LOC122345412 NA non-coding upstream 731176 4256178 ~ 4282937 (+)
G33251 NA non-coding downstream 309920 5336349 ~ 5336636 (+)
G33257 NA non-coding downstream 342005 5368434 ~ 5370521 (+)
G33206 ankle2,LOC107729791,LOC107597302,LOC107672626,LOC107741250,LOC107684979,LOC107595914 non-coding downstream 374886 5401315 ~ 5402784 (+)
LOC122346031 NA non-coding downstream 429668 5456097 ~ 5468031 (+)
G33348 NA non-coding downstream 442643 5469072 ~ 5539398 (+)
fbrsl1 LOC107656817,LOC107600129 other upstream 111710 4644101 ~ 4902403 (+)
G33174 NA other upstream 391053 4622507 ~ 4623060 (+)
G33015 NA other upstream 869717 3605186 ~ 4144396 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other upstream 1671043 3328800 ~ 3343070 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other upstream 2364752 2627084 ~ 2649361 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other downstream 577904 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other downstream 598838 5625267 ~ 5648047 (+)
tnpo1 tnpo1,LOC107700926,LOC107655929,LOC107596175 other downstream 933403 5959832 ~ 5982816 (+)
G33494 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 other downstream 1060833 6087262 ~ 6088562 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other downstream 1221366 6247795 ~ 6255340 (+)

Expression


Co-expression Network