CI01000004_16079875_16086958 (ACIN1, ACIN1A)


Basic Information

Item Value
gene id CI01000004_16079875_16086958
gene name ACIN1, ACIN1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16079875 ~ 16087211 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_16079875_16086958.mRNA
ATATAAACAACATAGCTTCGTGAGACATTTGTTTGCCTTATGTTAAAAAGGAATATGAAATGACTAGAAGCGGTACAATTATGTGACAAGAATACATGTTTATTGCCTGTTACTTCGTAAAACATCAAACAACTTCGATGTTCTCTCTCTGCGCTTCCACCCCGCCTCTTCCGGAAGCGCTCGTGGCGCGCTGACGTCGGTGAGGAAGGCGTTGCGGTCCGTGCGAGCGACAGAACGAGCGAAGGGAATCAAGATGGCGGACCTCGAAGACGTTACGCTGGACGGGAGGCCGCTCCATTCGCTCCGGGTGGCGGATTTGAAAGCAGCATTGGAAGAGAGAGGGCTTCCGAAAAGCGGACAGAAGAATGCTCTCATCAAGAGGCTCAAAGGGGCTCTTATGTTGGAGAACCTTCAGAAAACCTCCACTCATCACATTGGCCTGCAGCCTAACTCCCGGATTGGGGAGGAAATGAGTCAGAACAGTTTCATTAAACAGTACCTGGCCAAACAGCAAGAGCTTCTCAGGCAGCGGTTGGAGAGAGAGGCACGAGAGGCAGCTGAAACTGATGTCGACCAACACAAAGGAGGTGCAGCAGTTGGGGTGACTGCCAGTGAGAGTGATGAGCTCAGAGAAAAAGAATCACCCGGGCAGCCGTCCCCCTCCGCACCTGCCCAGCCTGGCGCAATAGCCTCTTTGTCGGTGCGGGTTGTTGGTGAAAGAGGACCGACTTCAAGCCATGTACTGGCCGACAGTGATGATGACAGCGAAGGTGGGGATGACAATGATGGTGAAGAGGAAGAGTGGAACGCCAAAGCTCAACGGAGTCGTCGAGCACAGCCTCCAAAAAGCCAACCGGTGAGGGAAAGATCTGGTGGCTCGCAGCAGCAACAGCAGCAGCCGCCCCCCCAACACATACCTTTACTATCACAGCAGCTCAGACAGCCCACTCCTCCCCCATCTCCTCCTCCTGAACTCTCTTTCCCTCTCCCAGACACCCCTAAACAGAGCCCCCCTAGTCCTGGAGAGCCCCCGTCTAGGCAGCGCATATCTAGCTCTTCAAGCTCTGGTAGTTCCAGTAGTGACAGTCGTAGCAGTAGCCCTGAACCAGCAGGTGACTCCACAGAACGCAGACCAGGCCCGTTGACCTTACTGGCACGCAAAATGGAGTCTGAGGGAGCTTTCTCTGGGGCGGGAAAGCGTGATAGGGAGGGAATTGATGGACTGAGAAGCCACCAAGAGGGAGCTGTATCCGCAATTACCCATACAGCTAATGCAGCGTCAGTTCTGTCATACCCTAGTTCAGTGATCTCCAACCAAGGTGTTAGTGTCGTTAGGACAGCGGTGACAGAGGAGAGTGATGGCACAAAGCAGGATGAAGAGCGTCTTGAGAAGGAAAGACAAGAACGAGAACAAGCTCTGGAAAGGGAGCGATTGGAGAGAGAGCGTATTGAGAAGGAAAGACAAGAGCGAGAGCAAGCTCTAGAGAGGGAGAGATTGGAGAAAGAGCGTCTTGAGAGGGAAAGACAAGAACGAGAGCAAGCTCTAGAGAGGGAGAGATTGGAGAAAGAGCGTCTTGAGAAGGAAAGGCAAGAACGAGAACAAGCTCTAGAGAGGGAGAGATTGGAGAAAGAGCGTCTTGAGAGGGAAAGGCAAGAACGAGAGCAAGCTCTAGAGAGGGAGAGATTGGAGAAAGAGCGTCTTGAGAAGGAAAGACAAGAACGAGAACAAGCTCTAGAGAGGGAGAGATTGGAGAAAGAGCGTCTTGAAAAGGAAAGACAAGAACGAGAACAAGCTCTAGAGCGGGAGAGATTGGAGAAAGAGCCGCCCCATCCTGTTTCTCTCGAGAGTCCATTGGAGAAGCCAGACGAAAGTGAGGCTGGGGAACCACAGAGTGCCGGCAAAGATGCTCGATCTTCAGAGTCTGTCCCACAACAGTCACCCACACTTGCAACACCACTATCCCCTCAATCTTCCTCCAAGAAGTCCCGCTTCCTTAGAGATGCTCCTCTGACGGTTCCTCTCCCATGCTCTCCAACTTCTGTGCTGAAGAGACCTCGTACTTTCTCAGACAGCCCAATGCCACAAGCCCCCTCAATTCCATTAGCATCTAAATCTGGGGAGCCAGTGCAAGAAGATGCTGTTCAGGCCCCTCAAACATCAGTCCTTGTTGCAGCACCTCATGAGCTTGAGAGCAAGACCCCTGAGTTGGCCGCCCAAAAACATGCACCACAAGAGGAAGAAAAGATGGAGACATCTAAGGACAGTGAGGCAAGCAAAGACACTAAACATGAGATGCTCAAAAAAATTGAGGATGAGAAGAAAAGAGGAAGGGAAAGGGTAAAGAAGGAGGTGGAGAAAAAAGAAAGAAAATCATCATCCTCTAGCGATTCCTCTTCATCCGACTCGGATTCTGGGTCTTCATCCTCCTCTCGCTCCTCCAGTTCATCCTCATCATCATCGGAGGAGGAGAAAAGTCATCCCACTTCAGGTGGTAGGAGG

Function

symbol description
acin1a Predicted to enable nucleic acid binding activity. Orthologous to human ACIN1 (apoptotic chromatin condensation inducer 1).
acin1 Enables RNA binding activity. Involved in several processes, including apoptotic chromosome condensation; negative regulation of mRNA splicing, via spliceosome; and positive regulation of monocyte differentiation. Located in cytosol; nuclear speck; and plasma membrane. Part of ASAP complex. Colocalizes with exon-exon junction complex.

GO:

id name namespace
GO:0016607 nuclear speck cellular_component

KEGG:

id description
K12875 ACIN1, ACINUS; apoptotic chromatin condensation inducer in the nucleus

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_16079875_16086958.mRNA True 2500 mRNA 0.52 6 16079875 16087211

Neighbor

gene id symbol gene type direction distance location
CI01000004_15999644_16005705 NA coding downstream 73450 15999495 ~ 16006425 (-)
CI01000004_15991836_15995032 CBLN12, CBLN3, CBLN1 coding downstream 84691 15991640 ~ 15995184 (-)
CI01000004_15965178_15990162 CHD8 coding downstream 89700 15965120 ~ 15990175 (-)
CI01000004_15956601_15962195 TOX4 coding downstream 116945 15956000 ~ 15962930 (-)
CI01000004_15922924_15923872 NA coding downstream 156003 15922726 ~ 15923872 (-)
CI01000004_16092821_16115520 NA coding upstream 5495 16092706 ~ 16115530 (-)
CI01000004_16146406_16149756 NA coding upstream 58865 16146076 ~ 16149756 (-)
CI01000004_16152238_16154327 NA coding upstream 64522 16151733 ~ 16154327 (-)
CI01000004_16155534_16158067 NA coding upstream 68161 16155372 ~ 16158067 (-)
CI01000004_16160899_16178772 AP1G2 coding upstream 73146 16160357 ~ 16179144 (-)
G34837 NA non-coding downstream 55094 16023244 ~ 16024781 (-)
G34836 NA non-coding downstream 56752 16019558 ~ 16023123 (-)
G34830 NA non-coding downstream 80728 15998819 ~ 15999147 (-)
G34583 NA non-coding downstream 135211 15930375 ~ 15944664 (-)
G34814 NA non-coding downstream 151125 15928443 ~ 15928750 (-)
G34639 NA non-coding upstream 36349 16123560 ~ 16136696 (-)
G34866 NA non-coding upstream 146100 16233311 ~ 16233711 (-)
G34867 NA non-coding upstream 146621 16233832 ~ 16234289 (-)
G34868 NA non-coding upstream 149146 16236357 ~ 16236643 (-)
G34796 NA other downstream 216127 15860613 ~ 15863748 (-)
CI01000004_15832789_15836192 NA other downstream 243644 15832573 ~ 15836231 (-)
G34633 NA other downstream 291978 15787386 ~ 15787897 (-)
G34718 NA other downstream 798226 15281016 ~ 15281649 (-)
CI01000004_15086759_15087492 NA other downstream 989517 15086671 ~ 15087575 (-)
G34934 NA other upstream 314534 16401745 ~ 16421506 (-)
G34982 NA other upstream 415514 16502725 ~ 16515974 (-)
G34995 NA other upstream 442231 16529442 ~ 16533008 (-)
G34999 NA other upstream 449984 16537195 ~ 16541278 (-)
CI01000004_16596848_16599652 NA other upstream 491456 16596476 ~ 16601205 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location