| Item | Value |
|---|---|
| gene id | G27147 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 4461118 ~ 4657333 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU30636 | False | 3642 | lncRNA | 0.41 | 13 | 4461118 | 4601530 |
| TU30639 | False | 1656 | lncRNA | 0.44 | 14 | 4461118 | 4657333 |
| TU30631 | False | 4056 | lncRNA | 0.40 | 12 | 4526177 | 4601530 |
| TU30634 | False | 3466 | lncRNA | 0.38 | 12 | 4571649 | 4601530 |
| TU30630 | False | 5873 | lncRNA | 0.38 | 3 | 4594111 | 4601530 |
| TU30640 | True | 3724 | lncRNA | 0.41 | 15 | 4594111 | 4601530 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_04414110_04428551 | CC2D1B | coding | upstream | 32567 | 4414110 ~ 4428551 (+) |
| CI01000004_04412723_04413196 | NA | coding | upstream | 47922 | 4411601 ~ 4413196 (+) |
| CI01000004_04400735_04404462 | ELOVL1A | coding | upstream | 56332 | 4400422 ~ 4404786 (+) |
| CI01000004_04315741_04317415 | GLULB, GLULA, GLNA, GS02, GLUL, GS01, GS04 | coding | upstream | 143502 | 4314776 ~ 4317616 (+) |
| CI01000004_04231304_04239652 | NA | coding | upstream | 220995 | 4231211 ~ 4240123 (+) |
| CI01000004_04690908_04706755 | ATP1B3A | coding | downstream | 33575 | 4690908 ~ 4706900 (+) |
| CI01000004_04754556_04784656 | ATR | coding | downstream | 97223 | 4754556 ~ 4784757 (+) |
| CI01000004_04786239_04788953 | NA | coding | downstream | 128906 | 4786239 ~ 4788961 (+) |
| CI01000004_04798717_04889650 | ARHGEF4 | coding | downstream | 141384 | 4798717 ~ 4889650 (+) |
| CI01000004_04924543_04956339 | VAV3B | coding | downstream | 267175 | 4924508 ~ 4956435 (+) |
| G27159 | NA | non-coding | upstream | 24616 | 4436181 ~ 4436502 (+) |
| G27166 | NA | non-coding | upstream | 49813 | 4410444 ~ 4411305 (+) |
| G27146 | NA | non-coding | upstream | 105574 | 4355317 ~ 4355544 (+) |
| G27138 | NA | non-coding | upstream | 125788 | 4335045 ~ 4335330 (+) |
| G27133 | NA | non-coding | upstream | 139750 | 4321159 ~ 4321368 (+) |
| G27183 | NA | non-coding | downstream | 2014 | 4659347 ~ 4661137 (+) |
| G27265 | NA | non-coding | downstream | 29375 | 4686708 ~ 4686922 (+) |
| G27271 | NA | non-coding | downstream | 37640 | 4694973 ~ 4695917 (+) |
| G27278 | NA | non-coding | downstream | 66087 | 4723420 ~ 4723630 (+) |
| G27305 | NA | non-coding | downstream | 98397 | 4755730 ~ 4756227 (+) |
| CI01000004_03550525_03552621 | PTGER4C | other | upstream | 908672 | 3550329 ~ 3553423 (+) |
| G26245 | NA | other | upstream | 938725 | 3509017 ~ 3522393 (+) |
| CI01000004_02745885_02768971 | NA | other | upstream | 1702180 | 2745885 ~ 2769135 (+) |
| G25992 | NA | other | upstream | 1724350 | 2736536 ~ 2736768 (+) |
| G25882 | NA | other | upstream | 1888069 | 2548075 ~ 2573049 (+) |
| G27805 | NA | other | downstream | 715492 | 5372825 ~ 5373803 (+) |
| G28165 | NA | other | downstream | 1075256 | 5732589 ~ 5733001 (+) |
| G28302 | NA | other | downstream | 1812695 | 6470028 ~ 6502087 (+) |
| CI01000004_06571261_06572539 | SEP15 | other | downstream | 1913887 | 6570771 ~ 6572667 (+) |
| CI01000004_07654234_07655677 | MRPL34 | other | downstream | 2997439 | 7654234 ~ 7656383 (+) |