G53942 (mtmr10,LOC107586029,LOC107670739,LOC107755009,LOC107750493)


Basic Information

Item Value
gene id G53942
gene name mtmr10,LOC107586029,LOC107670739,LOC107755009,LOC107750493
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 17293924 ~ 17529789 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU79988
GTTCTATTTCCTTTCCAACTAATGCCACAAGCTCCACACAAATATCCACCAAATATTTTAACACGAAGAGAAAAGTCTACACAGGCAGTGTAAAACCCATCCAAACAATCCTAAGTCAGAAAAATGTGCGATTGgagctttatattttatcatgtgcaaaaacaaatcCTCACTGACAGACACTGTTTAACAGACTGAATAAAAGTGTCCAGGTGACTGCCAGTACCTCAAGcctgcacattttaaatgagacCTAAATACGGGAAGTGAGGAGATCTTCAGGCCTTAGATCTTCATCTTTGTGTGACCTCACAGTCCTATCCCAGTCGTCTGCCCTCAAATCGTCTCATTAGCCAGTGTCTCCGTGGAGAGCCAGATCTTGGCTCCGTTGAGGAACTTGCTAAGAGGAGTCCCCAGGATCCCGGGGCGACACAGGTTGCCCACAGGAGAGAATGGGAACGAGGAGCTGAGGTACTCTGGAGGAGCAGGGGACTGGTGAGGAGTCGAAGTCGCCTTAAAGTACATTTTGCTATGCTCTGCGTGCAGGTTGTAAGGGGTACCCGCTGCTCCTTGGTACTGCTTCAACTGGTTCTGGAGCATTTCGATCTCGTCTGTGAGCACCGAGAGCTTGTGGAAGGCGGTGACGGGGCCGCCCTGAGTAATCTGTGCCTCGGGAACCCAGCGCAGGAAGCAGAGCTTCCAGACGGAGAGGTGAGATGGGAGGAGCTGGGGGAGCAGCAGGCCCTGTAGGTCGACAGGACGAGAGAAAAAGTCCCGAACGAAGCGTTCCGATGGGGTCTCCTGCTGCTCCCGCAACTGAGATAAATCAGAACGCAGACGCAGCACGAGGGAGTTCCGGCGAGCCAGGGTGTCGTTCGGACCGAGAGAGCCGTTCCGCAAAGCAGTGGGCAGACCCCGCAGCGTGGAGCTGTAGTTTTTCT

Function

symbol description
mtmr10 Predicted to enable phosphatidylinositol-3-phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to be active in cytoplasm and membrane. Orthologous to human MTMR10 (myotubularin related protein 10).

NR:

description
PREDICTED: myotubularin-related protein 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79988 True 941 lncRNA 0.52 2 17293924 17529789

Neighbor

gene id symbol gene type direction distance location
myo1ea myo1e,myo1ea,LOC107750494,LOC107755051 coding downstream 21757 17230383 ~ 17272167 (-)
rnf111 LOC107731799,LOC107700434,LOC107595081,LOC107750495 coding downstream 68496 17193981 ~ 17225428 (-)
sltm LOC107670749,LOC107700432,LOC107750497,LOC107731800 coding downstream 100641 17182012 ~ 17193283 (-)
adam10a LOC107750500,LOC107670741,LOC107700430,LOC107741424,LOC107585986 coding downstream 136518 17114794 ~ 17157406 (-)
aldh1a2 aldh1a2,LOC107670770,LOC107585984,LOC107700428,LOC107593009,LOC107750602 coding downstream 200808 17071192 ~ 17093116 (-)
sord sord,LOC107585997,LOC107700439,LOC107755029,LOC107670753,LOC107595113,LOC107670754,LOC107750486 coding upstream 80359 17610148 ~ 17612491 (-)
terb2 LOC107750636,LOC107586000,LOC107670733 coding upstream 84422 17614211 ~ 17616030 (-)
LOC122348815 cilp,LOC107554910,LOC107750479,LOC107670750,LOC107700449,LOC107755059,LOC107595070 coding upstream 326952 17856741 ~ 17863242 (-)
igdcc3 igdcc3,LOC107750478,LOC107670768,LOC107755062,LOC107700450,LOC107554891 coding upstream 358818 17888607 ~ 17957580 (-)
igdcc4 igdcc4,LOC107670755,LOC107700451,LOC107595068,LOC107755063,LOC107554907,LOC107750477 coding upstream 430594 17960383 ~ 18014175 (-)
G53884 lipc,lipca,LOC107670742 non-coding downstream 186477 17106882 ~ 17107447 (-)
G53859 NA non-coding downstream 262134 17031509 ~ 17031790 (-)
G53854 NA non-coding downstream 280942 17012219 ~ 17012982 (-)
G53850 NA non-coding downstream 287242 16999760 ~ 17006682 (-)
G53849 NA non-coding downstream 288028 16999226 ~ 17005896 (-)
G53963 NA non-coding upstream 78257 17608046 ~ 17608330 (-)
G53965 NA non-coding upstream 78557 17608346 ~ 17608605 (-)
G53969 NA non-coding upstream 79047 17608836 ~ 17609042 (-)
G53970 NA non-coding upstream 79364 17609153 ~ 17609358 (-)
G53974 NA non-coding upstream 97332 17627121 ~ 17627320 (-)
serf2b NA other downstream 245883 17046444 ~ 17048041 (-)
G53797 tpm1,LOC103462590 other downstream 359672 16881893 ~ 16934252 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other downstream 729586 16560418 ~ 16564338 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 2318756 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 3148644 14144506 ~ 14145280 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 1136484 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 1212371 18742160 ~ 18794207 (-)
G54330 LOC107557708,LOC107553077,LOC107740430,LOC107700368 other upstream 1316487 18846276 ~ 19291166 (-)
LOC122348206 tph1b,LOC107740493,LOC107557706,LOC107663941,LOC107553080,LOC108430795 other upstream 1379859 18909648 ~ 18914921 (-)
G54377 mns1,LOC107755086,LOC107553079,LOC107740431,LOC107663983 other upstream 1781859 19311648 ~ 19312124 (-)

Expression


Co-expression Network