igdcc3 (igdcc3,LOC107750478,LOC107670768,LOC107755062,LOC107700450,LOC107554891)


Basic Information

Item Value
gene id igdcc3
gene name igdcc3,LOC107750478,LOC107670768,LOC107755062,LOC107700450,LOC107554891
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 17888607 ~ 17957580 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243276.1
CAGAAAGGTGGATGAGCGCGTGTGCTGGTCGCGAGGAGGAGAGAGCACgagatgctgctgctgctgctgacacATTCCTTAAAAGATGTGTAAAATGGCGCAAGTGTGTCGGAGCCAACGGCTGTAGTAGTTCGGATCGAGAGGAACTGATTTACTGCTTCCCCATCATCTTCTTCGCTCTCGCTTCACCTTCTTCTTTTGCATCCCGTCTAATTTTCAATGTGATTAAATGGCTTCCGGACGGCGCCGCCAGGCTCCACGCTCACTCGGAATACTCCTGCTCGCTATTGTCGGTATGACCTGCGGGGGCGAGCTGTCGTTCACCTTGGAGCCCAGTGACATTATTGCTGTTCAGGAACAACCTCTGATGCTGCACTGTCAGGTGGAGGGCATCCCACCCATCGCCACACAGTGGAGACGCAACGGAGCTCTGATAGTGGAGGACCAGAACTATGTCATGTTTGCTAATGGCTCGCTTCTGATTAGTCACTTCCAGAAGACCAAGTCTGACGGCTCGTCTGATGAGGGAGATTACGAGTGCATAGCCCAAAACTTCTTTGGGCTGGTCTTGAGCCGCAAAGCCAGAGTACAGGCTGCTACAATGGCAGATTTTCATGTGCAGCCGCGCTCAGTGCGTGCAGAGCTGGGAGGTGTCGGGCGATTTCAGTGCCAAATCCATGGCCTGCCTGAGCCAGTCATCAGCTGGGAAAGAGACGGGCGACCCGTGGATACCTCTGATGACAGGTTTACTTTGCTGCCCACGGGTGTGCTGCAGATAACGGGCGTTCGCCCTGAGGACAGTGGGATGTACTGCTGTGTTGCACACAACAGTGCGGGAGTCAAACACAGCGCAGGAGCGCAGCTCACGGTCTCAGGCTCCCAGTCATCTGTTTACAAAGAACCCATGATCCTAGTGGGCCCTGAAAACCTCACTCTCACAGTTCACCAGACCGCCATCTTAGAGTGTGTTGCCACAGGTTATCCTCGACCAATCGTTTCATGGAGTAGACTGGATGGCCGGCCAATAGGAGTTGAGGGCATCCAGGTTCTAGGAACAGGAAACCTGATGATCTCTGATGTCAGAGTTCAGCATTCTGGTATTTACGTCTGTGCGGCCAACAAGCCAGGAACCCGTGTGCGCAGAACTGCTCAGGGACGCCTAGTTGTGCAAGCCCCTGCAGAGTTTGTgcagccccctcagtctatcgctCGCCCGGTGGGCACCACTGCCATCTTCACTTGTTTGGCCCAGGGTGAGCCGGTCCCACAGATCACCTGGCTGAAAAATGGACAAATCTTAGAGCCCGATGGCCATGTCAAACTCAGGAACAACAATAGTACTCTGACCATCTATGGAGTGACCCAGGATGATGAGGCCATATATCAGTGCATTGCAGAGAACAGTGCCGGCTCCACACAGGCCAGTGCCCGTCTGACTGTGCTGTGGGCTGACGGATTGCCGGGTGTGCCCACGGGCGTACGTGCAGAAGTCCTTTCTCCAACCACCATTCAGGTGTCCTGGAACGAGCCCACCCAAAACACTCAGGACATAATTGGATATGTGTTGCATATCCGCAAGACTGCTGACCCAGTTGAGATGGAGTACCAGGAGGCTGTGAGTAAAATGACCCTGCAGCAGGTTATTGGAGATCTGGAGCCTTCCACCAGCTACAGCTTCTATGTAAAGGCTTACACATCCCGCGGAGCCAGCAAAGCCTCTGAGACGGCAGTGGAGAGCACTCTGGGAGAAgTCCCTGCTCCACCAGCCTTGTTCACGAAAGTGATTAATTCGACGGTGGTCCAGGCCACATGGGAGCCCTCCACTAAGATGGGCCAGCAGGAAGGATTCAGTCTCTACTACCGTAAGGTTTCTGTCCCAATCTTCACTGGACCCCTTACCTTCCCACGTAATGTGACCCAGTACAACATCACTCAGCTGGATCCGTCTTTTGTGTATGAAATTAAGATTCTGGCTTTTAACCAGCATGGAGAGGGCAATGCCACGATGCGCTTTGTGTCGCTCAAGGAAGCGGTGGAGAAATCAGTGCTAAATACCCCTTGCAACTGTGTAAAAGACGAGCAGAATAAAAGCTCCACCACAGGCATCATCATCGGCATCCATATTGGAGTCACTTGCATCATTTTCTGTGTTCTTTTCCTCATGTTTAGCTACAGGGGCAGGTTGATGATGTGTAAAACCGTGCAGGCCACCCGACAGGCGGGCCGCAACCCAGCAGCAGGAGTCGCGCTTgaatcctcctcttcctcacagGGGGCTCTGGCCCTCAATGGCCCCCACAGGTTCAGCTCAGACGGGAATGGAGGAACCCACACTGCAAAGAGCTGCACCGACTCCAACGAGATGGAGAGACTTTTCTCAGGACCATCCCACTTCTCCCATCCACCTGACACCACCCACACAATCGAGAGCTCCTTGGTCTCTTGTCCGTTGAATGAAACCCAGATGTCCACACTTCCCCTTGATGACTTTAGCCTGATGGAGGAGTGTGAGGTGCAGTTCCGGCAGCATCCAGCAGAGGGCCAACTGGATGAGGTCTGATAAAGAAATAAAGGCCAAGAATATCCTCTACTCAGACTCCTGTCCAACTCAGGTCAACTGAAATATTCATCTTTTTTAGTTCTGTTTTTATCGTGCAaagaatatattatttgtaagtTAAGTTCCCTTTGTGGGAATCACTGGACTGTAATGCCGAGGGGTCCCTGTGGCCTCATGGATAGGTGAGGTTCTGTGATGGACATCTATTATTTCTCATTGGTAGGTGAACAAATTCACTCTTGCAGTTAAAGATGGCAGCGTACAGTGAAAGTCTAAAGTCACTAGtatatataattgattttattgGGCTTCTTCTGCACAACAGAGAAGGATTTTTCCTACTAAAAGATATATCCGACTTGCTGCCTCCTCTTAACCTACCAATGATTTCACAAGCCCATCCATCAGAGACTAAGATCTTCTTCCAGGGATTTCAATTTATTCTCAGGACTTTTTTTTCACTGATAtcaatgttttgttgtgttttttttaaagtaggtTTTAGTCTCCATGAAGACTTTAGACTCGGCTATGTGAACCTTAGAATTTGCAACAAAAAGCCTACCTCAGCTGGAATGAATGTCTTGTAGGAAGTCTTTGAGATCTGCATATTGCtgtctgttctgtttttatacACATCAAGCGTTCAGTCAAAAGAGAAAAAGGTGCTTCTCTACCTCAGATTTCAAGGACTGCCGCTCTCCTGCTCGTTGAAgcgaaacaagaaaaaaatccaaCATATAGCACTTCCAAATGTTGAAGTCAATGTTCTACCTCAAAATAACAATGTTGTTATTGTCGTTGTGGTTATTTTCACGTATTGAAACATAGCCTCTTGTTTGTGAGATCCTGGCTTCACTATGTTAATGAATTGCTGTGTTTTGATATGTCAGTACCTCATGCCAGTTGACAGATGACATTGTTCTATGAATTCTGCTTGTAAAGATGTTTTGATAGTGTCCTTGTATTCACGTAGGATTCTTTTGGTTCTATGTTTCCTGATCagagtatttttatttcaatcgTAGTCGACGCAGTAAAATGGAAAGACTTTTTAAGATAAACTGCACTGTTACTAATGTCttcaggataaaaaaaaattactgctCTCAGATGAACCGTTGGAAGAAGAAAGGCCACCATAGGCAACGCTGGATATAAGCATACGAAATGATGTTTAGGTATTTGAATAGTTTGACttcatgtgtttttgcatgTCATGTAACACAAAAGAACTGGAAAGATCGACAAGTGTGTAAAGCGTTCTTTACAAAATTAAGCACATGCTGTTTCTATGGGTGCTGATAGAAGTAAATTGTGACATAGTTTAGGTGCGCGTATCACGTGTCGtgatatttcatgaaaaattgAAATGTGGTTATAGGAGCTGTGATCAATTTCGAAGCTCTAGCACCCTTAGATACTGTTAAATCTGTTCAGATACTCCGCTGCATGTTATGACGGGAACGCCAAACTATGGAAGAACTGGGCATTTTAGAATTctccaggaagtgaacattccATTAGAAGCCAAAGCCACTGGAGATTCTCACGGCTTCTATGTGGAGttccatcatttttttaatatcccATGCCCCTCGTCCATGTTTTTAGTGCCACATTGATCAGGGAGCACAAAGTGCATCATACATACGCACATGACTCGCACACATAACATCTGTTGGCATTAGATTCTCAGAATACTGAGTAGAGGATGATGCCTGAACTACCGCTGGTCATCTCTTCATATATCTGACCAGCTAATGAATCGCTTTTCAATTGCTTTTCACTGTGTGCTCAGCCACCCAATCCAAGACCAGCTGTTTCTTTTAGCGGGGAGGGAGAGTTGAAAGTACCAGCAAGATGTTCTTTCTCCTCTTGTGTCCCATAATGCTAtggtacatatatatttttttagtaaccTACCTCGACACAGCAGTCATGCTCTCAGGTTGCTCCTACTCTGATTGGgagattgtattttttgtatagtacacatacacacacacacacacacacacacacacacacacatacacacatcagAGGAGAACATCTCCTCTGGACCCTTTAGCAGATCAGTGCGTTGCATTAGCTTTTCATGCGCTTTGATTTTATTGaatgtatagttttatttttgtctcattgTTATCAAATATTCATGTTTACTTTATTCCGGCTGGTTCAGATGACTGATCTAACGGTTTTGCCactatcatttttttattattattattattatttaataatgtaaaccTCCTCATCATTGTGTGTAGATAATGAGTCAAATTCGCATATTTTCATAACGCCCACGAATTCtgtaattaatcttttttaaagaaatggacAAAGTAAGCCTAGATAatcaaaaaaaatcctattcATGTAAGGTATATTCCTTCAAATACTGGTTCTGGAACAGAATTGCACAGTATATTACAGTGTAGAAAAGACTCAAACAATGtgctgtatatttattgtacCGATTGCATTGTAGTGTTGTCAATGGAGACTGTAGAAGCTTTTGTGTTGTCTGTATACAGATAAGTGCTCAATTCTTTGGCTGTGTTAAATAGAATTAATGAAAAAGATTCTGAACAACGAAAGGAATGTGATACGCTGTGCTGTAGAACTTTGTCCTTAATAATGAAAGTCCTCTATGAAATATCTATTGTACAGTCTTGGTGCTCTTGGCATTCTTGTAATAAGACAAAACGTTTTCATCTGTTGTGTAATGCGATACAAGCAATTCTCAATGCTGTTACATTTCCAAAAGTCATCTGcagttttgttgcttttttcctGATAGATTTGGTCTTGTGAGGTTTGTAAACTACTAGTGTGCAGATCAGTACAAGAAAAACAGTAATGAGCATCATCAGGCTTTAGGATTACAGTCTTGATCAGTTGACTGTCTTACAGAAAGCAGGTCTTGATTCGGTTGAATTAGGGTGCGTGTTCGACCACAAACGGACAGCTGCTGTTTTCAGTTCATCAGTTCATATCTTACTTGTCTGTGCTACCTCAGACTGATCTCTTTTTTCTGATGTAGAGATTCATCCTGAACTTTTCACAGAGGTATTTAGCCCTTATCTGGCATACGTTGTTCCTGTGGTGATGATAATCCTCATGCTGAAAACTGTTACTGTGATAAAGCATTAGCTCCACAGGCTTTCTGAGCAGCTCCTAGTGCTTGATCTCGCTTTGTTTCCATTCAATATTTAGTATCGTTTCTGGCTGGAGTCcatgaaagaacaaagaacatGTTACCAAAATGGCCCCTCGTCTCTAGAACCCACCTcgcacatgtatacacacacacacacacacacacacacacacacacacacggtcacaTCCCTGTAAAGAAAGACATGTTTGTGTCAGCATTAGTCCCGTGTCCCAGATTTCCCCAGGGAGACTCGGGGATGAGGCATTAACATGTAGCAGCCTCAGCTCCTGCCAGCGCTATGGCAACACCGACCCATTCACAGCAACAGAAAGACGTTCAAACTTCGAATCTgtaaaacaaacagctttttgTAGAGGATAATATGTACCAGTTTCACTCTGTTAAGCCCCTTTCAGGACCTGGGATTACATGGGAGTGCACTTTTTGCTTTTGGTGAGGGGACCAATAGCAGCCCAGCTGAGAGGAATTTTTATGCTCGCTTTTacagtttcacacacacagaggcttTAAACTTGTGTATTTGAAGCAATCACAGCATGAGGTTTTTAGAAGCGACTGGGGATTTCTGATGTCACCATGTGAAAATCTGATGGTGTCCATTACTGTTTGCTGTACTGTTCATAAAAATTCATGGGAGATGTTTATAGCGATACTCTTACAATGGAAGCCTGTGGGGTTTAAAAATAGAATGTGAATTATTCATGAAATACAATTTACTAATTGAGCTcttaagatttctacttttctAGCAGAACCAATGGAATTAGTTTAGATGGATGAGGAAGAATCCATTTAATGTGCGTTACAGTTACTTCTTACAGGTTATGCTTTtgacacatacatattttttatatgtattccCACTTGACTTTTAGGATTCCGTAGTAAGTTTATTGCTGAACCTGTAATATTCATAATTGTCACTGTGAAGTACTAAAGTATAAATCCTGTGCTGTTTCCACAGGTTTCTTTgtgctgttttaaaaattaatagtgATAAAAAGGAATAATTTACAGATTAGTTCAAGGCTAGTTGGCAAGCACAAACTGAATGGCACTCCTGCATTTCttgataaaaatgaacaaagaatcAGATTTGATCCTCTTTTAACCTCATCTCACATTAATCAGTATTGGTTAAAATACAGTGAATGTGAAGATGACCGTCACTTCTTTAAAACTGTGTTCATGACTGAAACACTGAATCTCAATTTATGGTGCTATTTGTGTCAGATATTCAGCTTATTCTTCTGTTTGGACATATTCATTTCctctttcacaaaaaaaaaaaaaaattcggaGGTGAATTTCACCTTGCGTTCACAACCGCACTGTAAAGTTCTGTATTAAAGACCTGTATAAAACTTTGTGAAGACTTGACAGATTGATTTACCGTCAACGTGTGCTTTGTTCATTAAAGGAAATGAAGGAAATTATGCATCAACGTCTCAGCGCAAACTGTATTTGTGTATAGCTATTTAACCACCCTCGGAGCTGCATATGATTATGGAAATGTAACATTCTTGCAGGGTTAGCACAGACTGTTCAAATGTGTGTCTCTGTAATCCACCATACAAACTTTAATTCTGGAGCTCAGCAGGAAAACGGGCATGACAGCGATGCCTGGGGACAAACTCCAGCAAGCACGGGGCTTTTGTGCTGCGTATGACCCTTCAGCAAACCCTTTCTCCGTTCAGCCGTTTCTCTTCACATGAAGGGTGTCATTTTAGAGGAAATGAAGAGAGCACAAAAGATGACGCTCAACTGAGCAGGTGTGAGATGTTCGGTTTTCTACCGTTCAGTTCTTCATGTAACTCGCTCTCTGTAATTCAGGTCCGGGTGAAATTACTGTTTCTGCTGCATTGGAAACACTGTTTCTACcagttttgtcttctccagatttGATGTCTAACCCCCTCTGACCACAAGACGGTCAGTGCtgtgtatgtacatatgcatatatttgtatgtgtatatgtatatttatatgaagaAAGAATACTAGACCGTTTCTAGTGGTTTGTATTGTTTTAGGGTTTATTGTGAAACACTGTTTAAAGTCAATAACAATGATGACAATAAACTAGTTCTAGTTTTAAAAAACGA

Function

symbol description
igdcc3 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including nervous system; neural plate; notochord; otic vesicle; and presumptive diencephalon. Orthologous to human IGDCC3 (immunoglobulin superfamily DCC subclass member 3).

NR:

description
PREDICTED: immunoglobulin superfamily DCC subclass member 3

GO: NA

KEGG:

id description
K22654 IGDCC3, PUNK; immunoglobulin superfamily DCC subclass member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243276.1 True 7859 mRNA 0.43 14 17888607 17957580

Neighbor

gene id symbol gene type direction distance location
LOC122348815 cilp,LOC107554910,LOC107750479,LOC107670750,LOC107700449,LOC107755059,LOC107595070 coding downstream 25365 17856741 ~ 17863242 (-)
terb2 LOC107750636,LOC107586000,LOC107670733 coding downstream 272577 17614211 ~ 17616030 (-)
sord sord,LOC107585997,LOC107700439,LOC107755029,LOC107670753,LOC107595113,LOC107670754,LOC107750486 coding downstream 276116 17610148 ~ 17612491 (-)
LOC122347931 mtmr10,LOC107670739,LOC107750493,LOC107755009 coding downstream 411851 17455031 ~ 17476756 (-)
LOC122349504 mcee,LOC107670763,LOC107585993,LOC107750491,LOC107700438,LOC107595079 coding downstream 439244 17447140 ~ 17449363 (-)
igdcc4 igdcc4,LOC107670755,LOC107700451,LOC107595068,LOC107755063,LOC107554907,LOC107750477 coding upstream 2803 17960383 ~ 18014175 (-)
nap1l4b nap1l4,nap1l4b,LOC107700452,LOC107670756 coding upstream 63712 18021292 ~ 18030556 (-)
cars1 cars,LOC107740410,LOC107700453,LOC107670769,LOC107755065 coding upstream 73563 18031143 ~ 18044557 (-)
lin7c lin7c,LOC107755067,LOC107595064,LOC107091323,LOC108432380 coding upstream 118177 18075757 ~ 18083092 (-)
bdnf bdnf,LOC107554894,LOC107595107,LOC107700392,LOC107670730 coding upstream 127921 18085501 ~ 18102199 (-)
G53983 NA non-coding downstream 252588 17632003 ~ 17636019 (-)
G53974 NA non-coding downstream 261287 17627121 ~ 17627320 (-)
G53970 NA non-coding downstream 279249 17609153 ~ 17609358 (-)
G53969 NA non-coding downstream 279565 17608836 ~ 17609042 (-)
G53965 NA non-coding downstream 280002 17608346 ~ 17608605 (-)
G54087 mybpc3,LOC107740474,LOC107670721,LOC107554890 non-coding upstream 98013 18055593 ~ 18056537 (-)
G54093 NA non-coding upstream 113071 18070651 ~ 18074482 (-)
G54104 NA non-coding upstream 181073 18138653 ~ 18138939 (-)
LOC122349130 NA non-coding upstream 403336 18360916 ~ 18386011 (-)
G54283 NA non-coding upstream 431626 18389206 ~ 18390530 (-)
serf2b NA other downstream 840566 17046444 ~ 17048041 (-)
G53797 tpm1,LOC103462590 other downstream 954355 16881893 ~ 16934252 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other downstream 1324269 16560418 ~ 16564338 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 2913439 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 3743327 14144506 ~ 14145280 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 708693 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 784580 18742160 ~ 18794207 (-)
G54330 LOC107557708,LOC107553077,LOC107740430,LOC107700368 other upstream 888696 18846276 ~ 19291166 (-)
LOC122348206 tph1b,LOC107740493,LOC107557706,LOC107663941,LOC107553080,LOC108430795 other upstream 952068 18909648 ~ 18914921 (-)
G54377 mns1,LOC107755086,LOC107553079,LOC107740431,LOC107663983 other upstream 1354068 19311648 ~ 19312124 (-)

Expression


Co-expression Network