cars1 (cars,LOC107740410,LOC107700453,LOC107670769,LOC107755065)


Basic Information

Item Value
gene id cars1
gene name cars,LOC107740410,LOC107700453,LOC107670769,LOC107755065
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 18031143 ~ 18044557 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244205.1
ATCAGTCAAACATCATTGATTTCGTGCATGTCCTGTTTCATTGTGATTTCCTATCAGGTTTTCCGGACACGTTATTGTTGCATCAGATAGTGAAAAATGGCATGCACAGGAGATATAGCCTTTGATTATGGCTTCTTACTGCGCATAAGTGAGGATGCTCGCAGAGTTGAGGCTCTGAATGAGTACTTGAGCAGTCGCAGTTACCTGGCTGGCTACGGGCCTTCGCAGGCGGATGCAGAAGCCTTTGCGCTTCTATGCGGGCCCCCACCTGAGCGGCATGTCCACGCCCTGCGCTGGTACAAACACATAGCCGCCCTGAAGCCCCAAACGAATGACCAGACCCCAGAATGCAGCACAAAGGGGAAGCGTGTGCAGCCTCCATGGTCTCCACCAGAAGGCACAGACGTTTCAAAGCTGCGTCTTTACAACAGCCTCACACGGACCAAGGAGGTGTTTGTACCACAGAGGGGCAACAGGGTTTTGTGGTACTGCTGCGGCCCCACAGTGTATGATGCTTCTCACATGGGTCATGCCAGGTCCTACATTTCTTTTGACATACTGCGGAGAATACTGAAGGATTATTTCAAATACGATGTCTTCTACTGTATGAACATCACAGATATTGATGACAAAatcatcaaaAGGGCCCGACAGAACTACCTGCTGGAGCAGTACAGAGAGAAGAAGCCCAGTCCCTCTCAGATACTGCAGGATGTGTTAACGGCCCGAACGcCATTTAAAGCCAAGCTTGCTGAGACTACTGACCCAGATAAGAAACAGATGCTGGAGAGGCTGGATGCAGCAGTGGATGCTGCCTTGGGTCCCCTGCAGGAGGCAGTGCAGAGCAGCTCTGCGGGCGATACTCTCCAGAATCGGGCACAGctcTTATTGGAGGAGGCTAAGGATCTCTTGTCAGATTGGTTAGACACCCAATTTGGGAGCCAAGTGACAGAAAACTCAATCTTCTCTTTGCTGCCAAAGTACTGGGAGGGAGAGTACCACAAAGATATGGAAGCCCTGAATGTCCTCGCTCCTGATGTTCTCACCCGGGTCAGCGAATACGTGCCAGAGATTGTGGCATTTGTCAAAAGAATTGTGGACAACGGTTATGGGTACGAGTCAAATGGATCGGTTTATTTTGACACAGCAAAGTTTGATTCCTGCCCTGCTCACTCTTATGCCAAACTGGTACCAGAAGCTGTTGGTGATCAGAAGGCTCTTCAGGAAGGAGAAGGAGACTTGAGTATCTCCGCAGACAGACTCAGTGAAAAGAGATCACAGAATGACTTTGCACTGTGGAAGGCCTCCAAGCCTGGAGAACCATCTTGGGACTCCCCTTGGGGAAAGGGGAGACCTGGTTGGCATATTGAGTGCTCCGCCATGGCTGGATCCATTTTGGGAGAGTCTATGGATATCCACGGAGGAGGTTTTGACTTGCGCTTTCCTCATCATGACAATGAATTGGCGCAATCTGAGgcaTACTTTGAGAATGATTACTGGGTACGATATTTCTTACACACGGGTCACTTGACCATCGCCGGATGCAAGATGTCCAAATCTCTAAAGAACTTTATTACTATCAAAGATGCCCTGTCCAAACATACGGCAAGACAACTTCGTTTGGCCTTTCTGATGCATTCGTGGAAAGACACATTGGACTACTCCAACAACACAATGGAGTCAGCCATCCAATATGAGAGATTCATAAATGAGTTCTTCCTAAATGTTAAAGATATTCTGAGGAGCCCCACAGACATCACTGGCCAGTTTGAGAAATGGGAAGCTGAGGAGATCGAACTAAACAAAAGcttctatgagaaaaaaacatcagttcATGAGGCGCTGTGTGACAACATAGACACTCGTTCGGCTCTGGAGGAGATGAGGGCTCTTGTCGGTCAGAGTAACACCTACATGGCTGCCAGAAGGGGTGCAAAACTACCTCCTAACCGCATGCTGCTGCAGAGCATTGCCCTGTTCTTGACCGACATGCTTAAGACATTCGGAGCAATTGAGGGAGCTGAGCCCATCGGCTTCCCTGTTGGAGGAAACGGAGAGAGTGCTGATCTCGAGAGCACAGTCATGCCCTATTTGTCAGTGCTGTCGGATTTCAGGGAAGAAGTCAGAAAAATTGCAAGAGAGAAGAAAGtgacaGAATTGCTGCGGCTGTGTGACGAATTGCGTGACGATACTTTGCCTGAGCTGGGTGTCCGACTGGAGGATCGTGATGGACTTCCCACGTCTGTGAAATTGGTGGACAAAGAAACACTTTTgaaggagagagaagaaaagaagaagATggaagatgaaaagaaaaagaaaaaggaagaggcTGCCAGGAAGAAACAAGAACAAGAGATGGCAAAGTTGGCAAAAATGAAGGTTAAACCCAGTGACATGTTCCGGTCAGAGACTGACAAGTACTCCACCTTTGATGAAACAGGCTTCCCGACTCATGATGCTGAGGGAAAGGAGCTCAGCAAAGGACTGAGCAAAAAGCTTCGAAAGCTCTACGAGGCTCAAGAGAAGCTGTATAATGAATACCTCCAGTCGACTCAGAACGGGAGCTGAGAACACGTGTTGAGTCTGATGTGATCTGCCATCCGCCCATACTGTCTGTTGTGAACTTGTCTTGTGTATGCGAAAAGGCAGCAAAACTTAAAAGACCTCATCTGTGAGTTTTGATCTCTTAACTTTGGCAAGGTTTTGCCAATTCCTTCTGGTCATGGTTGGAAGCTCATCGTTTTTTAGGGGGGGTTTTGACGCTCTGCAATCATGACTTCGAGGGATATTTTATGAGTATGATATTACGTGCTTTTTGCACACATAGAACAAAGATGCAAATATATCCGAACTTTTCTAATGTGGGTTTGGTGGTTTATATGAAGTATGCAAGACATAGTTAGCCATTATTGTGGGAATGGATCAAACACtcaatgttttcattattgatATAAAGGCTGGCTGGTCAAAGAGGCGTTTTCTCCAAAACACTGTTTACACATCAGCTAGTGATGAATATGATTCCTCCAGAATCAAAGTATCTCAGATGATACAGGAATGAAGGGACTTCAGGTTTGTAGGTTTACGACTAATGGAAAAACAGAGGCATACATAGGAGCACCAATTATTGTTAgtattaacataaatgaaatacGAAAATAAAGGATTTTGAATAATG
>XM_043244206.1
GTAAATGATCTAGAGATCAGTCAAACATCATTGATTTCGTGCATGTCCTGTTTCATTGTGATTTCCTATCAGGTTTTCCGGACACGTTATTGTTGCATCAGATAGTGAAAAATGGCATGCACAGGAGATATAGCAAAGGGGAAGCGTGTGCAGCCTCCATGGTCTCCACCAGAAGGCACAGACGTTTCAAAGCTGCGTCTTTACAACAGCCTCACACGGACCAAGGAGGTGTTTGTACCACAGAGGGGCAACAGGGTTTTGTGGTACTGCTGCGGCCCCACAGTGTATGATGCTTCTCACATGGGTCATGCCAGGTCCTACATTTCTTTTGACATACTGCGGAGAATACTGAAGGATTATTTCAAATACGATGTCTTCTACTGTATGAACATCACAGATATTGATGACAAAatcatcaaaAGGGCCCGACAGAACTACCTGCTGGAGCAGTACAGAGAGAAGAAGCCCAGTCCCTCTCAGATACTGCAGGATGTGTTAACGGCCCGAACGcCATTTAAAGCCAAGCTTGCTGAGACTACTGACCCAGATAAGAAACAGATGCTGGAGAGGCTGGATGCAGCAGTGGATGCTGCCTTGGGTCCCCTGCAGGAGGCAGTGCAGAGCAGCTCTGCGGGCGATACTCTCCAGAATCGGGCACAGctcTTATTGGAGGAGGCTAAGGATCTCTTGTCAGATTGGTTAGACACCCAATTTGGGAGCCAAGTGACAGAAAACTCAATCTTCTCTTTGCTGCCAAAGTACTGGGAGGGAGAGTACCACAAAGATATGGAAGCCCTGAATGTCCTCGCTCCTGATGTTCTCACCCGGGTCAGCGAATACGTGCCAGAGATTGTGGCATTTGTCAAAAGAATTGTGGACAACGGTTATGGGTACGAGTCAAATGGATCGGTTTATTTTGACACAGCAAAGTTTGATTCCTGCCCTGCTCACTCTTATGCCAAACTGGTACCAGAAGCTGTTGGTGATCAGAAGGCTCTTCAGGAAGGAGAAGGAGACTTGAGTATCTCCGCAGACAGACTCAGTGAAAAGAGATCACAGAATGACTTTGCACTGTGGAAGGCCTCCAAGCCTGGAGAACCATCTTGGGACTCCCCTTGGGGAAAGGGGAGACCTGGTTGGCATATTGAGTGCTCCGCCATGGCTGGATCCATTTTGGGAGAGTCTATGGATATCCACGGAGGAGGTTTTGACTTGCGCTTTCCTCATCATGACAATGAATTGGCGCAATCTGAGgcaTACTTTGAGAATGATTACTGGGTACGATATTTCTTACACACGGGTCACTTGACCATCGCCGGATGCAAGATGTCCAAATCTCTAAAGAACTTTATTACTATCAAAGATGCCCTGTCCAAACATACGGCAAGACAACTTCGTTTGGCCTTTCTGATGCATTCGTGGAAAGACACATTGGACTACTCCAACAACACAATGGAGTCAGCCATCCAATATGAGAGATTCATAAATGAGTTCTTCCTAAATGTTAAAGATATTCTGAGGAGCCCCACAGACATCACTGGCCAGTTTGAGAAATGGGAAGCTGAGGAGATCGAACTAAACAAAAGcttctatgagaaaaaaacatcagttcATGAGGCGCTGTGTGACAACATAGACACTCGTTCGGCTCTGGAGGAGATGAGGGCTCTTGTCGGTCAGAGTAACACCTACATGGCTGCCAGAAGGGGTGCAAAACTACCTCCTAACCGCATGCTGCTGCAGAGCATTGCCCTGTTCTTGACCGACATGCTTAAGACATTCGGAGCAATTGAGGGAGCTGAGCCCATCGGCTTCCCTGTTGGAGGAAACGGAGAGAGTGCTGATCTCGAGAGCACAGTCATGCCCTATTTGTCAGTGCTGTCGGATTTCAGGGAAGAAGTCAGAAAAATTGCAAGAGAGAAGAAAGtgacaGAATTGCTGCGGCTGTGTGACGAATTGCGTGACGATACTTTGCCTGAGCTGGGTGTCCGACTGGAGGATCGTGATGGACTTCCCACGTCTGTGAAATTGGTGGACAAAGAAACACTTTTgaaggagagagaagaaaagaagaagATggaagatgaaaagaaaaagaaaaaggaagaggcTGCCAGGAAGAAACAAGAACAAGAGATGGCAAAGTTGGCAAAAATGAAGGTTAAACCCAGTGACATGTTCCGGTCAGAGACTGACAAGTACTCCACCTTTGATGAAACAGGCTTCCCGACTCATGATGCTGAGGGAAAGGAGCTCAGCAAAGGACTGAGCAAAAAGCTTCGAAAGCTCTACGAGGCTCAAGAGAAGCTGTATAATGAATACCTCCAGTCGACTCAGAACGGGAGCTGAGAACACGTGTTGAGTCTGATGTGATCTGCCATCCGCCCATACTGTCTGTTGTGAACTTGTCTTGTGTATGCGAAAAGGCAGCAAAACTTAAAAGACCTCATCTGTGAGTTTTGATCTCTTAACTTTGGCAAGGTTTTGCCAATTCCTTCTGGTCATGGTTGGAAGCTCATCGTTTTTTAGGGGGGGTTTTGACGCTCTGCAATCATGACTTCGAGGGATATTTTATGAGTATGATATTACGTGCTTTTTGCACACATAGAACAAAGATGCAAATATATCCGAACTTTTCTAATGTGGGTTTGGTGGTTTATATGAAGTATGCAAGACATAGTTAGCCATTATTGTGGGAATGGATCAAACACtcaatgttttcattattgatATAAAGGCTGGCTGGTCAAAGAGGCGTTTTCTCCAAAACACTGTTTACACATCAGCTAGTGATGAATATGATTCCTCCAGAATCAAAGTATCTCAGATGATACAGGAATGAAGGGACTTCAGGTTTGTAGGTTTACGACTAATGGAAAAACAGAGGCATACATAGGAGCACCAATTATTGTTAgtattaacataaatgaaatacGAAAATAAAGGATTTTGAATAATG

Function

symbol description
cars Predicted to enable several functions, including ATP binding activity; cysteine-tRNA ligase activity; and protein homodimerization activity. Predicted to be involved in cysteinyl-tRNA aminoacylation. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to human CARS1 (cysteinyl-tRNA synthetase 1).

NR:

description
PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1

GO:

id name namespace
GO:0006423 cysteinyl-tRNA aminoacylation biological_process
GO:0005829 cytosol cellular_component
GO:0004817 cysteine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01883 CARS, cysS; cysteinyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244205.1 True 3181 mRNA 0.46 23 18031143 18044542
XM_043244206.1 False 2959 mRNA 0.46 22 18031143 18044557

Neighbor

gene id symbol gene type direction distance location
nap1l4b nap1l4,nap1l4b,LOC107700452,LOC107670756 coding downstream 587 18021292 ~ 18030556 (-)
igdcc4 igdcc4,LOC107670755,LOC107700451,LOC107595068,LOC107755063,LOC107554907,LOC107750477 coding downstream 16968 17960383 ~ 18014175 (-)
igdcc3 igdcc3,LOC107750478,LOC107670768,LOC107755062,LOC107700450,LOC107554891 coding downstream 73563 17888607 ~ 17957580 (-)
LOC122348815 cilp,LOC107554910,LOC107750479,LOC107670750,LOC107700449,LOC107755059,LOC107595070 coding downstream 167901 17856741 ~ 17863242 (-)
terb2 LOC107750636,LOC107586000,LOC107670733 coding downstream 415113 17614211 ~ 17616030 (-)
lin7c lin7c,LOC107755067,LOC107595064,LOC107091323,LOC108432380 coding upstream 31200 18075757 ~ 18083092 (-)
bdnf bdnf,LOC107554894,LOC107595107,LOC107700392,LOC107670730 coding upstream 40944 18085501 ~ 18102199 (-)
kif18a kif18a,LOC107554904,LOC107740412,LOC107670760,LOC107700457,LOC107755033,LOC107595063 coding upstream 72534 18117091 ~ 18138373 (-)
LOC122349713 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 coding upstream 352465 18397022 ~ 18400506 (-)
LOC122348011 LOC107749239,LOC107663077,LOC107574829,LOC107573432 coding upstream 479173 18523730 ~ 18527780 (-)
G53983 NA non-coding downstream 395124 17632003 ~ 17636019 (-)
G53974 NA non-coding downstream 403823 17627121 ~ 17627320 (-)
G53970 NA non-coding downstream 421785 17609153 ~ 17609358 (-)
G53969 NA non-coding downstream 422101 17608836 ~ 17609042 (-)
G53965 NA non-coding downstream 422538 17608346 ~ 17608605 (-)
G54087 mybpc3,LOC107740474,LOC107670721,LOC107554890 non-coding upstream 11036 18055593 ~ 18056537 (-)
G54093 NA non-coding upstream 26094 18070651 ~ 18074482 (-)
G54104 NA non-coding upstream 94096 18138653 ~ 18138939 (-)
LOC122349130 NA non-coding upstream 316359 18360916 ~ 18386011 (-)
G54283 NA non-coding upstream 344649 18389206 ~ 18390530 (-)
serf2b NA other downstream 983102 17046444 ~ 17048041 (-)
G53797 tpm1,LOC103462590 other downstream 1096891 16881893 ~ 16934252 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other downstream 1466805 16560418 ~ 16564338 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 3055975 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 3885863 14144506 ~ 14145280 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 621716 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 697603 18742160 ~ 18794207 (-)
G54330 LOC107557708,LOC107553077,LOC107740430,LOC107700368 other upstream 801719 18846276 ~ 19291166 (-)
LOC122348206 tph1b,LOC107740493,LOC107557706,LOC107663941,LOC107553080,LOC108430795 other upstream 865091 18909648 ~ 18914921 (-)
G54377 mns1,LOC107755086,LOC107553079,LOC107740431,LOC107663983 other upstream 1267091 19311648 ~ 19312124 (-)

Expression


Co-expression Network