ube3c (ube3c,LOC107684811,LOC107556065,LOC107653289,LOC107724408,LOC107591004,LOC107742134)


Basic Information

Item Value
gene id ube3c
gene name ube3c,LOC107684811,LOC107556065,LOC107653289,LOC107724408,LOC107591004,LOC107742134
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 23018379 ~ 23042501 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244564.1
CATTTGACCGTGCTGCTGGTAGGCGGGATCTtctctgtgttgtgtttgtttagtaGAGCAAGAGCAACGATTTcggttttgttttctctgttttccaGTCGCTGAACGGTATCGTTCGGCTGATCATTCAATAAAACCAGGCGCAGACAGCACTTTGTTGCTCTGCACACAGGGTACTTGCATTGATTGCTGCTCGATGGAAAAAGTGTAAACATGTTCAGTTTTGAGGGAGATTTCAGGAGAACGCCCAAGGTGTCCCTTGGTGGAGCGAGCAGAAAAGAGGAAAAAGCGTCACTTCTTCATCGAACACaagaagaaagaaggaaaaggGAGGATGAAAGGAAAAGGCTAAAAAATGCAATCATCATTCAGTCATACATAAGGGGATACCAAGACAGGAAACAGCAAtatGCCATTCAGAGGGGCCGCTTCGACcggtgtgtgtgtcagtgccAGTCAGGCTCCGGCCCTCAACTGGCAAACAATGCCATACTAAGCCAACTCGTTCGCCAGCTGCTCTTTTTTTACAGGCAGAGTGAAGACAGACCAAGAATGATCTGGATGTGTCAGAGTTTGGTAAAACATCACGCTCAGTTTGTGAAGCTGCTGACGGGGCCAGAAAGACAGAGCTGCCTGTTTCAGATCAAGAGGATACTGGGACACTGTTGCAGGTTATTGCAAGCATGTGAAGATGACAGTTTGAATGTGGCCGTCCCGATGCGGATGCTGGAGGTCTTTTCGTCTGAGAGAACCTACTTGCCCTTTCTACAGGATGAAAACTACGTCACTGCACTTATTGAGCAAATATTGTACTATATGGTAGAGAAAGGATATTACAGATCGCTGTATGTTTTAGTGAACCACAAGTTGCCGTCGAGTCTAGAGTATAGTGATGCTCCTTCCATTCCACTGGCACAAACGCTGCTGGAACACACGCTCAAGCCTCTGCACTTTACATACAGCTCCTGCCCTACAGATACCAGGCAGTTTGTTTTTTCGGCCTTCACCGAGGAGTTCATTTCAGCGCCTTTCACAGAACAAATCTATAATTTCTTCGTGCCAGCTTTGTCAGACCCAAAACTAGCTTTCCCATTTCAGAACTTCCTTTGGTCTCTTCAGGCCACCATAGCCTCCTCTGCCCAGGCCAGAGCTCAGGCTCCCTGGCTCTTTTACTTTGTGCTATCAGTTGGAGAATCAGGACTGGGTTCGCTTTCAGATAAAGGCTTGCTGTTGTACTTGAATGCGCTACAGACTCTGTTGCCATTGTTGCCAGTGACCGAGTGCAGCAGTAGAGCTGACATCAACAGTGATTCAGAAGATGAGGAAGAAATGACCGTACAGCCTCCTGCTGCGCAGGACGGCAGTTGGATTTCTGTGCATTATATAACAGAGGAGTGTGTACAGAAGTTAGACACCAAGCAGCAGACTAATGCCCTGCTAACATTAGTGTGGAGAGACTCAGCAAGTGAGGACATCTTCACCATGATGGCCTCTATCTGTCACACGCTGATGGTGCAACATCGTATGATGGTGCCCAGAGTTAGGCTTTTGTACAGTTTAGCCTTCAACGCTCGCTTTCTCAGACACCTATGGCATTTAATCACATCTATGAAGACTAAAATGATCACAGGCTCTATGGTTCCCTTGTTGCAGGTGATGTCTAGAGGTTCTCCAATGTCTCTGGAGGACGCCAACAGGATCATCCCTCTCTTCTATCTTTTCAGTTCACTCTTCAGTCATTCACTCATCTCTGTGCATGACAGCGAGTTCTTTGGCTCAGCAGATGGTCAGAGCCAGACGTCGATGATGCCCTTCTCTCTGGCGGAGTTGGTGACATTGTCTCGGTGTTTGCGGGACGCGTGTCTGGGAATCATTAAGCTGGCCTATCCAGAGACTAAGACGGAGCACAAAGAGGAGTATGTTGCAGCATTTCGTAGTGTCGGGGTGAAAACTAACAGCCAAGTTCAGCAGCACATTCAAGCCCAGCAAAAACGATGGGTCCAGCTCTTTAAGgtgattaCCAATCTTGTGAAAATGCTGAAAGCCCGAGATATTCGAAGACCGTTCTGTCCATCAGGTCATTGGCTATCTGATGAGGTCAACATCAGAGCAGACAagGTGACTCAGCTCTATGTGCCCTCTGCAAGACATGTGTGGAGAACCAGGAGAATGGGACGCATCGGACCGCTTCAGTCCACGTTAGATGTTGGACTGGAGCCTCCACCATTGTCCGTATCGGAGGAAAGACATTTGGCAATCCTCACCGAACTTCCGTTCGTTGTGCCCTTTGAGGAGAGAGTGAAGATCTTCCAGAAGTTGATTTATGCCGATAAGCGTGAAGTCCAAGGGGAGGGCCCTTTTTTGGATGGCGTTAATATAACCATTCGACGAAACTACATCTACGAAGATGCTTACGACAAATTGTCCCCCGAGAATGAGCCTGATCTTAAGAAGAGGATCAGGGTTCATTTGCTCAATGCACATGGGTTAGATGAAGCTGGCATTGATGGAGGAGGGATATTCAGAGAGTTCTTGAATGAGCTGTTGAAGTCCGGCTTTAATCCTAACCAAGGCTTCTTCAAAACAACTAATGAAGGTCTTCTCTATCCGAGTCCCACCGCAGAGATGCTTGTGGGAGAGTCCTTCACCCGTCATTACTACTTCCTCGGCAGAATACTGGGGAAGGCACTGTATGAAAACATGCTGGTGGAATTGCCATTTGCAAGTTTCTTCCTGTCCAAGCTCTTGGGCACGAGTGCAGATGTGGACATCCACCATCTGGCCTCTCTAGACCCAGAGATGTACCGAAACCTGCTTTTCCTCAAGAGCTATGAAGGTGATGTGGAAGACCTCGGCCTTAACTTCACCGTGGTCAACAATGATCTTGGGGAGGCCCAGGTGGTCGAGCTCAAACCAGGGGGAAAGGACATCCCGGTAACCACAGCCAACAGGATAGCCTACATCCATTTAGTGGCCGATTACCGTCTGAACAAACAGATCCGAGCACACTGCCTGGCCTTTCGACAGGGCCTGGCCAACGTGGTCAACCTGGAGTGGCTGCGCATGTTTGATCAGCAGGAAATTCAGGTACTGGTTTCTGGTGCACATGTGCCCATCTGTCTGGAAGACCTCAAGAGATTTACTAACTACTCAGGTGGTTATTCAGCAAATCATCCAGTGATCAAGATTTTCTGGGATGTGGTGGAGAGCTTCAGCGATGATGAAAAACGCAAGCTGCTCAAGTTTGTTACAAGCTGCTCACGACCTCCGCTCTTAGGCTTCAAGGAGCTGTACCCAGCCTTTTGCATTCATAACGGAGGCACTGACCTGGAGCGTCTCCCCACAGCTAGCACTTGCATGAACCTTCTCAAGCTGCCAGAGTTCTGTGACCCTCAGCAAATGAGGAACAAGTTGCTCTACGCTATTGAGTCCTCTGCTGGCTTTGAGCTCAGCTGAGGAACATGTCAGCTCCTAGATGGCCTTGAAACCCAAACAAGAATATTCAGCTTTTGTCATGGCGACCAGATGGGAAATGATCAGAATGGACAGACGGCCCGCGTCTGTGTGAATCTACAGTGATTTGCCGAAGGTGCTGGGAAACAAGACAGTTTGAAGTTGTGGCATGGACAAATAcatgctcatttttatttttacttcaaagAAAGTAATCTTGtacataatgcatttataaattcgAAGCAACACCCAAGAAGGCGTCCGTTGATTGAAAGCACTAACATTGAACAGGAACATCCGATTGTTGAAGATATAGAGGGAATAAAATGGCAGCGCAAAATTTACTTGTAGATTTTCCTTGGTTTGGCATTTCTAACACCAGAGAGGATGTTTTTAGACGATGTCGTTTTACGTTTTCGAATGCTGTTTGTCACCGTAGTGCAGCACAATTTGAGTGTCTACCAATAAAATGCATGCGTTTGCCTCGCTAACTCAAGAACAAGCTAAACAAGATTTCTCCAATATAACAGCATGCCTGCAACGTCTCCAGTACAGTATACTAAAGAGTTGGCTTGGTTCTAGATCACAGCGCTTCAGCTATACAAATGCGCTTGCCTTGATACAGGGCTTGCTAATGGTGTAGCATTGAGCTATTAATTTTCCAggctaaaaatgattttatggcTAATGTGCCACCAACAAAAGAGTTTAATAGATTAGAGTCATGGCAGGATGGGTGAGGTTAACAGGGGTGGTAGAACAGTAGCACAGAAAATTGTGTGTAGTCGTCTTGTTTTAATCATGTAATGAATTGAACTGGCAGGTTCGGGTAGACAGTCACCTAATATAGAGAAaagaaattgtgatttaaattatgtaatcatGTATTCCACACAATGGGCCTTGGCATTATAGCAATGATTCTGACATTTGtgcaatacagtaaaaacagaccTTGAAGACATTCAAGTGGTTCAAGGGGAGATTTTCAAGTCAAATTGATGTGGGAAGGAACAATGTGACTTAATAGCCAAGGCCTGTGTACTGGACACTACTCCAACATCTGCTGTAGCACAGAACAGCTCAGTAAACTGAAGAGGATGATGTGTTTCCTGTCAACATCTTCtggttgccttttttttttttttttttttttttttttgctgctacTTCACTGGTTTCAGCACGGCTGTAAGGACATGTTTGTTGGTTGGCAGAGCTGATGATGATGGATATGTGAATATGTATATGTCTACATCTTTTAAAGTTGATGTTCAGCATTTGTACAAGACTTTTAATTTCTCTCGTCAGTAAAAACCTGTCTCCCAACATCTGTTGAATTAGAACATATAACTCCATACAGGTGCTGAATATTTGATTGTTTACAAACACCGATGTGTAGAGTTTGTCTTGATGCTGgggcctgtttcataaaacaagctTACCAAATAAAccaggcttatttcagttagtctgactTCTTGTCAGTTGGTTTGGATGAAGTAAGCCTGGCTTATTTGGTGAACAGGCCCACGGTGACGAGAAAGCAAAGTTTGCGTAAAGATGTTCGTTTACCGACTTTAAGTGTATGTGCCctgaatgatttttttgaaaGACAAAGACAGGTGTTCAATCTATGTGTCAGAGTGTATGGCaatgattaaatatgttttgagtttttatttgca

Function

symbol description
ube3c Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human UBE3C (ubiquitin protein ligase E3C).

NR:

description
ubiquitin-protein ligase E3C

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10589 UBE3C; ubiquitin-protein ligase E3 C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244564.1 True 5144 mRNA 0.45 24 23018379 23042501

Neighbor

gene id symbol gene type direction distance location
dnajb6b dnajb6b,LOC107684822,LOC107653290,LOC107556066,LOC107724407,LOC107742135,LOC107591005 coding downstream 4936 22993209 ~ 23013443 (-)
dync2i1 LOC107556069,LOC107739348,LOC107591041,LOC107683362 coding downstream 226658 22779958 ~ 22791721 (-)
shrprbck1r shrprbck1r,LOC107722400,LOC107656201,LOC107590993,LOC107739381,LOC107556071,LOC107653293 coding downstream 259848 22747024 ~ 22758531 (-)
grpel1 grpel1,LOC107722418,LOC107590998,LOC107656173,LOC107739410,LOC107556074 coding downstream 406381 22608958 ~ 22611998 (-)
ccdc96 ccdc96 coding downstream 414105 22597003 ~ 22604274 (-)
rnf32 rnf32 coding upstream 42453 23084954 ~ 23096105 (-)
rbm33a rbm33,LOC107724401,LOC107684887 coding upstream 106445 23148946 ~ 23183718 (-)
en2a LOC107742144,LOC107659441,LOC107724415,LOC107598710,LOC107684735 coding upstream 165094 23207595 ~ 23210525 (-)
insig1 insig1,LOC107724405,LOC107591013,LOC107684749,LOC107659442,LOC107598709 coding upstream 179487 23221988 ~ 23227599 (-)
htr5ab htr5ab,htr5a,LOC107684958,LOC107591053,LOC107659435,LOC107742155,LOC107598724,LOC108412811,LOC103024346 coding upstream 255618 23298119 ~ 23308773 (-)
G55409 NA non-coding downstream 225128 22793033 ~ 22793251 (-)
G55357 NA non-coding downstream 423549 22594620 ~ 22594830 (-)
G55353 NA non-coding downstream 423838 22588277 ~ 22594541 (-)
G55331 NA non-coding downstream 445600 22546955 ~ 22572779 (-)
G55345 NA non-coding downstream 471854 22546032 ~ 22546525 (-)
G55470 NA non-coding upstream 16957 23059458 ~ 23062957 (-)
G55524 NA non-coding upstream 185558 23228059 ~ 23228734 (-)
G55697 LOC107684714,LOC107724393,LOC107598708,LOC107742128,LOC107659444 non-coding upstream 300962 23343463 ~ 23772937 (-)
G55710 NA non-coding upstream 364627 23407128 ~ 23408712 (-)
G55698 puf60a,puf60,LOC107591014,LOC106568618,LOC102778806 non-coding upstream 723918 23766419 ~ 23770102 (-)
wdr97 LOC107722359,LOC107591040,LOC107684931 other downstream 239053 22769632 ~ 22779326 (-)
otog LOC107722353,LOC107656169,LOC107591037,LOC107703275,LOC107742581,LOC107554595 other downstream 529456 22443798 ~ 22488923 (-)
LOC122347949 LOC107560124,LOC107722378,LOC107656186,LOC107554594,LOC107742573 other downstream 577940 22432400 ~ 22440439 (-)
si:dkey-23n7.10 si:dkey-23n7.10,LOC107560112,LOC107742582,LOC107554633,LOC107722376,LOC107703276 other downstream 913050 22102914 ~ 22105329 (-)
G55165 cd59,LOC107560108,LOC107736732,LOC107677235,LOC107722399,LOC107554602 other downstream 962134 22052796 ~ 22056245 (-)
nom1 nom1,LOC107724412,LOC107684778,LOC107653288,LOC107742133 other upstream 8689 23051190 ~ 23058781 (-)
G55732 htr5ab,LOC107684958,LOC107591053,LOC107742155,LOC107659435,LOC107598724 other upstream 693538 23736039 ~ 23741133 (-)
rrad rrad,LOC107728691,LOC107564552,LOC107725029 other upstream 2379114 25421615 ~ 25423593 (-)
ciao2b fam96b,LOC107681502,LOC107673764 other upstream 2383143 25425644 ~ 25428025 (-)
si:ch211-260e23.7 si:ch211-260e23.7,LOC107736736,LOC107562536,LOC107698628 other upstream 2812279 25854780 ~ 25857238 (-)

Expression


Co-expression Network