G29575


Basic Information

Item Value
gene id G29575
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7552532 ~ 7554333 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU33482
ATTCCCGAACCCGTAGCATCTGAGTGTGGTAACGTGCGGTGCCAGAGTACAGCCTCTGGATGATGGCTGACACATTTCCAAATATGCTAGCATACATCAGTGCTCCAATAAGCATGACACAGATAGAAAAGATCTTCTCAGAATTGGTGTTTGGGGAGACGTTTCCAAAGCCCACGCTGGTGAGGCTGCTGAAGGTGAAGTAGAGGGCAGTGACATATTTATCTTTAATCGAGGGTCCTGATCCAGGACTCGTTTCATTATACGGCTTCCCCAGCTGATCACCCAAAGAATCAAGCCAACCAATGCGAGATTGACTGCTCCTCTCCACGTTCCCAATAGCATACCAGATGCAGGCCAGCCAGTGGGCGATAAGTGCAAAGGTGCACATGAGGAGAAAGAGCACTGCAGCTCCATACTCAGAGTAGCGATCGAGTTTACGTGCCACACGCACTAATCGCAGCAGCCGAGCTGTCTTCAGTAGGCCAATCAGAGTCGTCGTCTGCCAATACATGAAAATGATTAGGATCAAAAGGTTATGACAAGGTTTGTGGCAGCTATGACAGAATATTAAAGTCACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU33482 True 579 lncRNA 0.48 2 7552532 7554333

Neighbor

gene id symbol gene type direction distance location
CI01000004_07481146_07504328 SLC12A7A coding downstream 48204 7480733 ~ 7504328 (-)
CI01000004_07424499_07454604 COL15A1B coding downstream 97928 7423615 ~ 7454604 (-)
CI01000004_07388945_07408147 TGFR1, TGFBR1, TGFBR1A, TGFBR1B coding downstream 144385 7388461 ~ 7408147 (-)
CI01000004_07331060_07339831 NA coding downstream 212701 7330875 ~ 7339831 (-)
CI01000004_07327597_07330648 NA coding downstream 221884 7327597 ~ 7330648 (-)
CI01000004_07606787_07617579 MYH6, MYH7, MYH6.S coding upstream 52365 7606698 ~ 7617579 (-)
CI01000004_07621014_07632760 MYH6, MYH7, VMHC, VMHCL, SMYHC2, SMYHC3 coding upstream 66592 7620925 ~ 7632760 (-)
CI01000004_07646516_07653787 TRNAU1APB coding upstream 91581 7645914 ~ 7653787 (-)
CI01000004_07656773_07666677 ANO8A coding upstream 101858 7656191 ~ 7666677 (-)
CI01000004_07670856_07673369 NA coding upstream 116179 7670512 ~ 7673952 (-)
G29568 NA non-coding downstream 22197 7530126 ~ 7530335 (-)
G29343 NA non-coding downstream 164676 7387581 ~ 7387856 (-)
G29334 NA non-coding downstream 165135 7385073 ~ 7387397 (-)
G29511 NA non-coding downstream 229641 7322651 ~ 7322891 (-)
G29500 NA non-coding downstream 231797 7317591 ~ 7320735 (-)
G29598 NA non-coding upstream 111424 7665757 ~ 7665994 (-)
G29551 NA non-coding upstream 205325 7759658 ~ 7761020 (-)
G29544 NA non-coding upstream 220940 7775273 ~ 7780067 (-)
G29542 NA non-coding upstream 244217 7798550 ~ 7800281 (-)
G29556 NA non-coding upstream 246114 7800447 ~ 7800752 (-)
G29388 NA other downstream 920625 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 1006960 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 1925018 5616644 ~ 5628289 (-)
G27746 NA other downstream 2348808 5178227 ~ 5203724 (-)
G26788 NA other downstream 4276811 3267683 ~ 3275721 (-)
G29656 NA other upstream 410031 7964364 ~ 7965500 (-)
G29746 NA other upstream 800165 8354498 ~ 8358127 (-)
G30316 NA other upstream 1823604 9377937 ~ 9406921 (-)
G31203 NA other upstream 3192104 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 3853132 11406957 ~ 11412907 (-)

Expression


Co-expression Network