G60782


Basic Information

Item Value
gene id G60782
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3824902 ~ 3826416 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU89925
GTGATATTAGACAGAGTCACTTCAGTCTGATCTTTGACAACATGAGGCAGCTTTACATGCTTCTACCGGTCCTTTGGCCACTCATTAATTTGTCTCATTCATCTTTCAACGCTCCAGTTCCCGTCATCACAGTGTACCAGCAGATGGAGGACAGAGAGCATGTGATCGTCATGTGCTCGTTTGGTAGAAGGTTTATTGAGAGCTCTTTCCAGCTGTCAGTGGAATATGAACAAAACTACACCCTTAAGaacccagcatgcattgcacaTGAAGTGTGCATGTTTAACATCACCTCTTAGAGCATCATGATGGAGTATCTTCACTCTACATTGGCTTTTTCTCCTTTATTGTTGTTAGTGTCATTATAATGACCGCTGCGGTGATTGTGACCAACATTAGAAGCAATGCACAAGATTCAATAACCACTATGTGGGCGTCTGAATAACAGTGGATTACTGACAGCGTAAAACAGACATAAAGGATGAGCTGTTCTGGAAAGGGACATATCTAATCTccctaaaacaaataaaatgtcatatacaca

Function

NR:

description
pre-rRNA-processing protein TSR2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89925 True 544 lncRNA 0.41 5 3824902 3826416

Neighbor

gene id symbol gene type direction distance location
LOC122350989 LOC107751585,LOC107696922,LOC107552208,LOC107584868,LOC107674323,LOC107584869 coding upstream 17055 3800278 ~ 3807847 (+)
slc6a6a slc6a6a,LOC107696920,LOC107552205,LOC107714566,LOC108264963,LOC107674322 coding upstream 59814 3743485 ~ 3765088 (+)
abtb1 abtb1,LOC107674366,LOC107696919,LOC107751593 coding upstream 87798 3726570 ~ 3737104 (+)
gpd1a gpd1a,LOC107696907,LOC107751598,LOC107552204,LOC106571950,LOC106566713 coding upstream 113867 3704865 ~ 3711035 (+)
asic1a asic1a,LOC107584862,LOC107751588,LOC107696918,LOC107674327,LOC107714557,LOC108439661 coding upstream 121178 3681533 ~ 3703724 (+)
LOC122350007 LOC107552172 coding downstream 2093 3828509 ~ 3834154 (+)
pcsk1nl pcsk1nl,LOC107743122,LOC107552210,LOC107701826,LOC107584871,LOC107674382 coding downstream 9380 3835796 ~ 3845945 (+)
fgd1 fgd1,LOC107552218,LOC107727417 coding downstream 106374 3932790 ~ 3979201 (+)
tfe3a tfe3a,LOC107584878,LOC107727418,LOC107743115,LOC107701807,LOC107674333 coding downstream 153363 3979779 ~ 3994876 (+)
cxxc1a cxxc1a,LOC107701818,LOC107743112,LOC107727409,LOC107674299,LOC107577056 coding downstream 181172 4007588 ~ 4012823 (+)
G60743 NA non-coding upstream 168970 3654761 ~ 3655932 (+)
LOC122350949 NA non-coding upstream 216925 3607315 ~ 3607977 (+)
G60728 NA non-coding upstream 244920 3579502 ~ 3579982 (+)
G60718 NA non-coding upstream 254618 3569494 ~ 3570284 (+)
G60673 LOC107699615,LOC107552196 non-coding upstream 738529 3085756 ~ 3086373 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding downstream 58466 3884882 ~ 3885873 (+)
G60870 NA non-coding downstream 81296 3907712 ~ 3908800 (+)
G60895 NA non-coding downstream 314193 4140609 ~ 4215206 (+)
G61007 NA non-coding downstream 475256 4301672 ~ 4342107 (+)
G61048 NA non-coding downstream 606582 4432998 ~ 4436499 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 1785066 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 1788922 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 1804868 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 1906531 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 2606098 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 22198 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 98445 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 202887 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 1278154 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 1400536 5226952 ~ 5229608 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_09535652_09553069 NA coding CI01000010 null 9535067 ~ 9553069 (-)