si:dkey-16n15.6 (si:dkey-16n15.6,LOC107667993,LOC107549944)


Basic Information

Item Value
gene id si:dkey-16n15.6
gene name si:dkey-16n15.6,LOC107667993,LOC107549944
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11664560 ~ 11668438 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246524.1
TGTTATTGAAGAAAACTTTTCGGTAGCCTAAACTGTGTTCAGGTTATTGGCCAAAGAGAGTTAAGCTCTTTGACGCCGcgttacattttattgaaattactAGCACGTGCTTATTATACGTAaataagttgttgttgttactaTTATTGTTTGGAAATGCCCGATTTGAAGGAATCCTGCCCTCGTGTGCTCGACTTCCGGATAGGACTCCAGTCCGGCTCTGGACCTCTAAtcagttgattttaaaataaaagtccctCGGTTAAACACactctttttttatcaaatgcacAGACTTTCTAAGACACtcatttaaagttattaaaaaaatgatttttataagtAAATTGTTTTCTACACATTTTattccttcatttttattttagaaatgtttcccATGTATTCCAAAAGAAGAGGTTTCTGAGAGAGTACAGACTTGTGGGAAGATGGACTTGGCTCTCTACCTGTTACCCTACCTGTGTTTAAGTCAATCATTAATAAGTGAGCTCAGAAAGGTACCCTTTAGGCAATAGGAAGCCACCTTGGTATAGATTTGTCAAAAGctatttatgcataaatgccTATTAATCCAGCCAACTGTGGTTTGCAACTGAACTGATAACAGATAGGTGGATATTCACAAAGATATTCGTGGATGTTCAAGGCTCAGAAATTCTTGTGTTTCGTGTGTTTTTCTGATTTCACCAAACAATGGGGAAAGCGGACAACTGTACATTAATGGGAGGTGGGATTCCTCTGTCATCTGAGTTCTTTAAAGTGATCAAGAATGATCTTTGGCTATTCCTCCTTCCTGCTGTGTTTGCTGTGCTGCTTCTTGCTCTCTTCATGGAGGAGATCGGTTTCTTTCTGCGTTATGTCCCCTCTCAGCGGCGTAGACGTCTCAGCCTTTGGATCCTAGGAATATACCCAGTCTTTGGGATGACATCTATCATTGCGCTATATGTTCCACGCTCCTCATCTCTATGCAATTTTATTGCATCTCTTTATCACTCCATTACACTCTTGAAGTTTATGGGTCTTATAAAAGACTTTTTTGGTGGAAAGACTCGTATGCTGGAGATGTTAGCAGGGGAGCAGGCCTCTCCAAACCCCTTCCcttgctgttgctgctgctgtcttCCTCTCTTCAACATCAACAAGACCAGTGTGGGCTGGATGATGGCCGCTGTTCTTCAGCTCTCTGTGGTCAGAACAGTCCTGTTCTTCCTCGCTCTTGTCCTCTGGACTGATGAGCAATACGACTATGGGGATGTGAATTCAGTTAATCTCAACATGTATGTCAATGCCATCATTGCCATATCGACCTTTCTGTCGTTCTATGGCTACCTGCTTTTTTATAAAGCCACAAAAAAGGCTTTGCCTGGATATGGTCTTCGTGCCAAGTTTATTTGCATCATTGTCATCCTGGTCCTTTGTGGACTACAGAGTGGAATTCTGGAGACCATGGGTGCGCTGAATGTCATCCCCTGCACGCCTCCCTTCTCCGACCTGTTTCGATCTCAATTGATCTACCACTATTCTATAATTGTGGAGATGTTCTGCATCAGCCTCTTTGCACATCACACATTCCGGAAAGTTGAACCCTGTCAGGATGAGGGTGAAGAAATAGAAGTTGATGTCATAAGAGCTTTCAATGAAAAGGCAATTCAGACAGAAGATGAGCTGCCAATTGCTGTGCAGCTCTCCTCTCGAGAAGACGATCCATGCTATTCTAACCCTGGATACAatagtgacagtgaagacagcCTCTGTAAAATTGAACACGCACCACTGGACCGCTTCCCCTTCCCCATACAGCACAGAATGCAAACCGTGGCAAACACTGAAAAAGTGTGTACTAGACCACCTGAGGACTCCACGAGTGTGTACCGGCCGACAATTACTGTCAGTGCTGAAATTAACCATGTTAACAATGGTGATGTTACTGTTGTATAGAATTTGCATAGtcttataatttagtttttttcttttccattttatatGTCTCTGACTCCACTGGGGCCAGGAAActaaggtatttaaaaaaaaaaagtgcagtgtaatgaaatgaaaatctcACCAGCATAACAAGACTATGTATAAGACTGTAATCTCTATTATAGTACCTTGAGTTTACCATTTAAATGTACGGTACAGTACAATTTTATGAAATGCAGCCTACGCAATAAAATTTCCAATAATTTATAAAGGCtatgttaaaaaaagcaatatgaaCATAAGTGGTTAAATTGTGGATTTACATTTGAAGctataaaacctaaaaaacagGATAGACTTAAAACTGaattgactttttaaatttcatttgtttcgtaaaattgtaatatttttgttcttccaaggta

Function

symbol description
si:dkey-16n15.6 Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: organic solute transporter subunit alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246524.1 True 2366 mRNA 0.40 7 11664560 11668438

Neighbor

gene id symbol gene type direction distance location
mapre1a mapre1a,LOC107549980,LOC107731276,LOC107550524,LOC107680003,LOC107668120 coding upstream 382 11660581 ~ 11664178 (+)
LOC122350221 LOC107745754,LOC107549981,LOC107731130,LOC107678654,LOC107549566 coding upstream 4666 11651632 ~ 11659894 (+)
dnmt3ba LOC107549981,LOC107667992,LOC107549566,LOC107678654 coding upstream 13177 11639181 ~ 11651383 (+)
tpd52l2a tpd52l2a,LOC107731215,LOC107668052,LOC107549984,LOC107745757,LOC107678582 coding upstream 107220 11549224 ~ 11557340 (+)
dnajc5aa dnajc5,dnajc5aa,LOC107668106,LOC107745759,LOC107678568,LOC107549988,LOC107549528,LOC108412505,LOC103036084,LOC105906402 coding upstream 115675 11541395 ~ 11548885 (+)
suv39h1a suv39h1a,LOC107731148,LOC107668084,LOC107549953 coding downstream 101 11668539 ~ 11673619 (+)
foxp3b LOC107668086,LOC107549951,LOC107731149,LOC107550167 coding downstream 15249 11683687 ~ 11696342 (+)
sema3gb sema3gb,LOC107678691,LOC107745751,LOC107549978,LOC107731275 coding downstream 42590 11711028 ~ 11742637 (+)
ccdc22 ccdc22,LOC107549974,LOC107668042,LOC107731281,LOC107678736,LOC107745747,LOC107549645 coding downstream 97409 11765847 ~ 11776913 (+)
nt5dc2 nt5dc2,LOC107731170,LOC107668043,LOC107678756,LOC107745746,LOC108442396 coding downstream 109828 11778266 ~ 11787914 (+)
LOC122350248 NA non-coding upstream 44393 11615467 ~ 11620167 (+)
G63094 NA non-coding upstream 45330 11619019 ~ 11619230 (+)
G63052 NA non-coding upstream 141649 11518410 ~ 11522911 (+)
G63024 emilin3a,LOC107731182,LOC107668027,LOC107745820,LOC107550125,LOC107549958,LOC107695222 non-coding upstream 217289 11447033 ~ 11447271 (+)
G62996 NA non-coding upstream 270411 11351311 ~ 11394149 (+)
LOC122350251 NA non-coding downstream 81122 11749560 ~ 11752585 (+)
G63158 NA non-coding downstream 102343 11770781 ~ 11797971 (+)
G63173 NA non-coding downstream 186948 11855386 ~ 11855620 (+)
LOC122350250 NA non-coding downstream 318893 11987331 ~ 11999294 (+)
G63188 NA non-coding downstream 348288 12016726 ~ 12017352 (+)
ppdpfa ppdpfa,LOC107678627,LOC107549986,LOC107745755,LOC107668053,LOC107731217,LOC108412507,LOC103034602 other upstream 100152 11562281 ~ 11564408 (+)
slc17a9a slc17a9a,LOC107731251,LOC107668105,LOC107549987,LOC107745761,LOC107549524 other upstream 123439 11534500 ~ 11541121 (+)
plp2a NA other upstream 219552 11441969 ~ 11445008 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other upstream 353127 11294805 ~ 11311433 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other upstream 466757 11192724 ~ 11197803 (+)
fance LOC107731142,LOC107668098,LOC107549969,LOC107678824,LOC107745739,LOC107591838,LOC107577385 other downstream 148619 11817057 ~ 11820659 (+)
si:ch211-163l21.10 LOC107731153,LOC107549947,LOC107668018,LOC107745734 other downstream 185156 11853594 ~ 11857421 (+)
LOC122350223 NA other downstream 379071 12047509 ~ 12050968 (+)
lamtor5 lamtor5,xip,LOC107668015,LOC106566397 other downstream 389219 12057657 ~ 12060197 (+)
G63453 NA other downstream 821822 12490260 ~ 12491924 (+)

Expression


Co-expression Network