LOC122350428 (LOC107668044,LOC107731208,LOC107555595)


Basic Information

Item Value
gene id LOC122350428
gene name LOC107668044,LOC107731208,LOC107555595
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11192724 ~ 11197803 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246879.1
ACACGCTTTACTTCCGTATTCCACTGTTCCTACGGGAGCTTATAGGAGTGTCGTAACTTTTTCCTATGATGTGTTACGTCGCCTTCACAGCCCATAAACCAGAAAGCAGGATTGTTTCTTCGCTTTTCAAAGGTCTTCTCAAAGCTAACACTCGCGGTTCTAAATGATTTACCATTGAATCTGAAGACTCCACAGATGATGAGGAAATCAAAAGCGCTTCACATTAATTACCCATATCATCATTCATACGTCGATGAACTGAACTTCAGCATACACCGATTTTACAGTGGAttgcttttcttctttctgcacGTCCTGCTCCCAAGTTTGAACCTACAGAGATTTATGGCATCAAAAGGAGGAGAGAAACCAATGCAACTATGACCAACAATCCAAACTTCATCTAATGTGTTGTTGAAATCATAACCGAGCTAATGAAGTGTGGAGAAGAAACATTGAACTTTGTTTTGGATTGTGTTTGGATTGTGTTATTCATTGCTGCAACTTTGAATTTCAAACTGTGTTTTAGTGCATGTGCTCATGCTGAGTATGAGATACATGGAGAATGCTGCCCCATGTGTGCACCAGgaaatcaTGTTTATTGGCACTGTACGATAGACACGAGCACAACATGTATTCCATGTCCTGTATCAACGTACATCGATGAGCCCAATGGCTTGGATAAATGCTTTCCCTGCTCTGTGTGTGATGCAAAACTAGGTTTAAAGATAAAGAAAACCTGCACACGCTCTGCAGATACTATTTGTGAGCCGTTGGAGGGATTCTACTGCACTGAGCGAAAGAAAGATAGCTGCAGATTTGCTGCGAAGCACTCTGAATGCCACCCTGGACAATATGTCAAACAAACAGGAACAGCATTTACTGATACTGTATGTGGTAACTGCATGCAAGGGACTTACTCTAATGGCTCTTACACTGCCTGTCAACCACATTCAAATTGTGAAATTAAAGGccttaaagaaacaaaaccagGAACAATGTCATCTGATGTGGAATGTGGGAAGTCAGTTCCAATTGCTCTCATTGTTGGAGTCATTGTTGGAGTCATTGTTGTCGTTTTGATGACTGCTGTTGGGATAAAACTCTATTGCACATTTAAACAGAAGAGACAAGCTATTGACAGAAatatttatttttgctccgTGCCAATACCAGAGAGTGATGGTCAGTGTGAACCAACGTCACCAGACTCAGTGACCCCTCTTATATTCAACACTAGTAGCCCAATACCTCAATCTACTGCCTGTTCTGTTTTAAGTGGAGACAATGTGACCTGATATCAGAAGAGGTGTATTGTTGCTCATTAAAGAATCCAAAAGTATCAAAGAACCTGAAGACTCCACAAATCTTAAAGGCTTTGTGTAAATTGCATCTTCTGTTCTGTTGTGAGTGATAAATAGAGGAGCTGTCAAATAATGATCAATACAATCCAAGCACACTCTCGCTGTAAGTCTTTATCGTGTCTTCACACTAAATACACACATCATATCTTGGTATTTTCTACCCAAATCAGTGATTTTTGTTGAGACATTTTTCCTCTTTCAACCAAAACCAATAATCGTGGATTGAGGTGTCTAAAATTGCattcttatttttatctcaTGTATTAGAAAATGATGTACTTTGAAAGTAGGAACTGATGTCCACCCTATTTCACCAAGATCCACTCACTTTTCAACTTCTGGCATTGCCACTGCTGTGGACAACATTACTAACTGGAGACTAACAATCTAGGACCAAATGTTGAAGAAACCAGAACAGTTTATGCACCTGATTTGAACATGATCAATTTAAGGattgtattattaattgctGCTAATTTGAACTTTAAACTGATTCACACATGTGCTGAATATGAAATAAACGCATATAAACAA
>XR_006251600.1
ACACGCTTTACTTCCGTATTCCACTGTTCCTACGGGAGCTTATAGGAGTGTCGTAACTTTTTCCTATGATGTGTTACGTCGCCTTCACAGCCCATAAACCAGAAAGCAGGATTGTTTCTTCGCTTTTCAAAGGTCTTCTCAAAGCTAACACTCGCGGTTCTAAATGATTTACCATTGAATCTGAAGACTCCACAGATGATGAGGAAATCAAAAGCGCTTCACATTAATTACCCATATCATCATTCATACGTCGATGAACTGAACTTCAGCATACACCGATTTTACAGTGGAttgcttttcttctttctgcacGTCCTGCTCCCAAGTTTGAACCTACAGAGATTTATGGCATCAAAAGGAGGAGAGAAACCAATGCAACTATGACCAACAATCCAAACTTCATCTAATGTGTTGTTGAAATCATAACCGAGCTAATGAAGTGTGGAGAAGAAACATTGAACTTTGTTTTGGATTGTGTTTGGATTGTGTTATTCATTGCTGCAACTTTGAATTTCAAACTGTGTTTTAGTGCATGTGCTCATGCTGAGTATGAGATACATGGAGAATGCTGCCCCATGTGTGCACCAGgaaatcaTGTTTATTGGCACTGTACGATAGACACGAGCACAACATGTATTCCATGTCCTGTATCAACGTACATCGATGAGCCCAATGGCTTGGATAAATGCTTTCCCTGCTCTGTGTGTGATGCAAAACTAGGTTTAAAGATAAAGAAAACCTGCACACGCTCTGCAGATACTATTTGTGAGCCGTTGGAGGGATTCTACTGCACTGAGCGAAAGAAAGATAGCTGCAGATTTGCTGCGAAGCACTCTGAATGCCACCCTGGACAATATGTCAAACAAACAGGAACAGCATTTACTGATACTGTATGTGGTAACTGCATGCAAGGGACTTACTCTAATGGCTCTTACACTGCCTGTCAACCACATTCAAATTGTGAAATTAAAGGccttaaagaaacaaaaccagGAACAATGTCATCTGATGTGGAATGTGGGAAGTCAGTTCCAATTGCTCTCATTGTTGGAGTCATTGTTGGAGTCATTGTTGTCGTTTTGATGACTGCTGTTGGGATAAAACTCTATTGCACATTTAAACAGAAGAGACAAGCTATTGACAGAAatatttatttttgctccgTGCCAATACCAGAGAGTGATGGTCAGTGTGAACCAACGTCACCAGACTCAGTGACCCCTCTTATATTCAACACTAGTAGCCCAATACCTCAATCTACTGCCTGTTCTGTTTTAAGTGGAGACAATGTGACCTGATATCAGAAGAGGTGTATTGTTGCTCATTAAAGAATCCAAAAGTATCAAAGAACCTGAAGACTCCACAAATCTTAAAGGCTTTGTGTAAATTGCATCTTCTGTTCTGTTGTGAGTGATAAATAGAGGAGCTGTCAAATAATGATCAATACAATCCAAGCACACTCTCGCTAAAATGATGTACTTTGAAAGTAGGAACTGATGTCCACCCTATTTCACCAAGATCCACTCACTTTTCAACTTCTGGCATTGCCACTGCTGTGGACAACATTACTAACTGGAGACTAACAATCTAGGACCAAATGTTGAAGAAACCAGAACAGTTTATGCACCTGATTTGAACATGATCAATTTAAGGattgtattattaattgctGCTAATTTGAACTTTAAACTGATTCACACATGTGCTGAATATGAAATAAACGCATATAAACAA

Function

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 5-like isoform X1

GO:

id name namespace
GO:0050896 response to stimulus biological_process

KEGG:

id description
K05152 TNFRSF14, HVEM, CD270; tumor necrosis factor receptor superfamily member 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246879.1 True 1898 mRNA 0.39 9 11192724 11197803
XR_006251600.1 False 1734 transcript 0.40 10 11192724 11197803

Neighbor

gene id symbol gene type direction distance location
LOC122350429 LOC107668046 coding upstream 5277 11184524 ~ 11187447 (+)
LOC122351035 LOC107668047 coding upstream 8949 11173306 ~ 11183775 (+)
mad2l2 mad2l2,si:dkey-23c22.2,LOC107549323,LOC107731212,LOC107668049,LOC107695292 coding upstream 20191 11169602 ~ 11172533 (+)
LOC122351105 lrrc47,LOC107731176,LOC107745777,LOC107667988 coding upstream 26591 11160735 ~ 11166133 (+)
LOC122350694 lrrc47,LOC107731176,LOC107667988 coding upstream 164887 10991504 ~ 11027837 (+)
LOC122350458 LOC107695288,LOC107549334 coding downstream 2068 11199871 ~ 11203803 (+)
tnfrsf14 NA coding downstream 9399 11207202 ~ 11212312 (+)
LOC122350456 NA coding downstream 14655 11212458 ~ 11218643 (+)
LOC122350459 LOC107668090 coding downstream 21517 11219320 ~ 11222931 (+)
rassf11 LOC107731195,LOC107550001,LOC107668034,LOC107695295,LOC107549421,LOC107745822 coding downstream 35111 11232914 ~ 11235484 (+)
G62896 NA non-coding upstream 49628 10971712 ~ 11143096 (+)
G62897 NA non-coding upstream 218758 10973247 ~ 10973966 (+)
G62873 NA non-coding upstream 373307 10819217 ~ 10819417 (+)
G62868 NA non-coding upstream 392749 10799693 ~ 10799975 (+)
G62743 NA non-coding upstream 662037 10526979 ~ 10530687 (+)
LOC122350460 NA non-coding downstream 6026 11203829 ~ 11204547 (+)
G62996 NA non-coding downstream 153508 11351311 ~ 11394149 (+)
G63024 emilin3a,LOC107731182,LOC107668027,LOC107745820,LOC107550125,LOC107549958,LOC107695222 non-coding downstream 249230 11447033 ~ 11447271 (+)
G63052 NA non-coding downstream 320607 11518410 ~ 11522911 (+)
LOC122350248 NA non-coding downstream 417664 11615467 ~ 11620167 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other upstream 640933 10536143 ~ 10551791 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other upstream 713925 10431802 ~ 10478799 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other upstream 824861 10348914 ~ 10367863 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other upstream 1487085 9704481 ~ 9705639 (+)
smim15 smim15,LOC107700545 other upstream 2714393 8477171 ~ 8478331 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other downstream 97002 11294805 ~ 11311433 (+)
plp2a NA other downstream 244166 11441969 ~ 11445008 (+)
slc17a9a slc17a9a,LOC107731251,LOC107668105,LOC107549987,LOC107745761,LOC107549524 other downstream 336697 11534500 ~ 11541121 (+)
ppdpfa ppdpfa,LOC107678627,LOC107549986,LOC107745755,LOC107668053,LOC107731217,LOC108412507,LOC103034602 other downstream 364478 11562281 ~ 11564408 (+)
fance LOC107731142,LOC107668098,LOC107549969,LOC107678824,LOC107745739,LOC107591838,LOC107577385 other downstream 619254 11817057 ~ 11820659 (+)

Expression


Co-expression Network