LOC122350694 (lrrc47,LOC107731176,LOC107667988)


Basic Information

Item Value
gene id LOC122350694
gene name lrrc47,LOC107731176,LOC107667988
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10991504 ~ 11027837 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247374.1
TTTGCGTTGGACAGTATGGCTGAAGAAAGCAGCTCATTCAATGTCTGGCCAGAAATAGAAAAGGCAGAAAAGGAGAACAGGCGTGAGCTGGTGCTTCAGGGTTCAGCGGTTGACAAAAAGATCGAGAGCAGCGGCGGACTTCACGCGCGACTTTATTCCCTCTCGCTCCTGAACTACCTGGAGATCAGTCAATGTCCCAGTCTACATGAGATCCACGAGAACATCAGACATCTGTCTAATCTACAGAGTCTGGTCCTCTGCAGGAACAAGCCTCACTTCAGTCCCAAAAGCATCGGTGAACTGAAGGCGATCAAAGTCCTGGATTTGTCTGCCAACCAGCTGCAGGCTTTGCCCGAGGAGGTCTGTTCACTGAGCGAGCTCAACACTTTAAATGTCAGCTGCAACAGCATCGCTGCTCTGCCGGATGGTCTGAGCAAGTGTGTGAAGCTCGCCAGCGTCAATGTGTCTAAAAATGCACTCTCTCGACTTCCAGATGACTTGTGGTGCTCCAGCCTGGAGCTCCTCAGCAGCATCATTGCATCAGAAAACGCGATAGAGGAGCTGAGCAGTGATGTTCATAACCTGCTTGCGCTGAAGGTTTTAGATCTTTCCAACAACAAGCTCCAAGAACTTCCATCTGAGTTGGCCGATTGCCCCAAGCTGAAGGAGACCAATTTTAAAGGGAACAAGCTGAAGGACAAGAGGCTTGAGAAGATGGTGAACGGCTGCCAGACTAAATCAGTCCTAGATTACCTGAGGGCAGGTGGGAGAGGGAAAGGCAAAGCCAAGCAGCAGGATGGAGAAGTGAGCGAGAAGCTTGACGGAGGCCGTAACATCTCGAAGAAGAAAAGCGGTGCAAAGCAGAAAGGCAAAAAAGAGGCAGAGGAAGTGGATGAGCTTAATCGGATGGTTGTGAGAGTTCTGCATGTATCCGAAGCACCCACGGCTTTAACGGTCAAAGTTTCTGCAGACATCAAGGATGTTCGGCCATACATTGTGTGCTGCATTGTAAAAGGCATGAACCTCAGACAAGGAAATGCACTCAAGCGATTTCTAGTTGCTCAGACCAAACTTCATGATGAGATCTGTGCCAAAAGGACAACAGCAACCATCGCAACTCATGACCTGAGCTTGCTGAAAGCTCCTCTGTTGTATGACGCCAGGCCACCGGAAACACTGAAGATACCTTCAGCTCCTCTGATGGGAAAGAACTTCACCCGCTGCTTGTTTGACGTGAGAGATCATGTGGTCTCGCTCTACCAATCACAAAACAGCCCAGAGGACAAAGCAAAGAGAACAGGACGTGAGCATCACCTTTGTCTCACCTGGATCTGCAATGAGAGAGATAGAAGCACTCAGATCTCCAATCAGGGAAAGTGTCAAAGAGGAAAGCAGCCTGACGCTGAGGTACCGAAACACCTCACCCACGACTTCCACAGTGATGGAGCCACCTTTGGCTTCCAGGTGCCCGGGGTGAGCCTTTGTTTCCCTGGGCACCTTGCCAATAATCCCGACACAAAGAGCCCAACCCTCCAGAGGCATCTGGAGAGGCTACTCTCTGCTCCCCAAACCACCCAAAGCACGAGAGTCCTCTGGGCCACCCAGAGATACTACTAA

Function

symbol description
lrrc47 Predicted to enable RNA binding activity and phenylalanine-tRNA ligase activity. Orthologous to human LRRC47 (leucine rich repeat containing 47).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 47-like

GO:

id name namespace
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247374.1 True 1617 mRNA 0.51 6 10991504 11027837

Neighbor

gene id symbol gene type direction distance location
b3gnt7l LOC107555588,LOC107731177,LOC107668025,LOC107549282,LOC107695240,LOC107745837 coding upstream 20735 10968059 ~ 10970769 (+)
dffb dffb,LOC107745838 coding upstream 26781 10962188 ~ 10964723 (+)
LOC122351050 ajap1,LOC107731270,LOC107745781,LOC107668121,LOC107555602,LOC107695280,LOC107549259 coding upstream 285962 10659401 ~ 10705542 (+)
LOC122351073 LOC107555585,LOC107731134,LOC107695233,LOC107667986,LOC107745826,LOC101883956 coding upstream 434244 10552901 ~ 10557260 (+)
LOC122349965 ela2,LOC107668061,LOC107555594,LOC107731230,LOC102217447,LOC107745828 coding upstream 455944 10533737 ~ 10535560 (+)
LOC122351105 lrrc47,LOC107731176,LOC107745777,LOC107667988 coding downstream 132898 11160735 ~ 11166133 (+)
mad2l2 mad2l2,si:dkey-23c22.2,LOC107549323,LOC107731212,LOC107668049,LOC107695292 coding downstream 141765 11169602 ~ 11172533 (+)
LOC122351035 LOC107668047 coding downstream 145469 11173306 ~ 11183775 (+)
LOC122350429 LOC107668046 coding downstream 156687 11184524 ~ 11187447 (+)
LOC122350458 LOC107695288,LOC107549334 coding downstream 172034 11199871 ~ 11203803 (+)
G62897 NA non-coding upstream 17538 10973247 ~ 10973966 (+)
G62873 NA non-coding upstream 172087 10819217 ~ 10819417 (+)
G62868 NA non-coding upstream 191529 10799693 ~ 10799975 (+)
G62743 NA non-coding upstream 460817 10526979 ~ 10530687 (+)
G62693 NA non-coding upstream 506905 10445678 ~ 10484599 (+)
G62904 LOC107549999,LOC107731193 non-coding downstream 128181 11156018 ~ 11248294 (+)
G62909 NA non-coding downstream 129171 11157008 ~ 11272858 (+)
LOC122350460 NA non-coding downstream 175992 11203829 ~ 11204547 (+)
G62996 NA non-coding downstream 323474 11351311 ~ 11394149 (+)
G63024 emilin3a,LOC107731182,LOC107668027,LOC107745820,LOC107550125,LOC107549958,LOC107695222 non-coding downstream 419196 11447033 ~ 11447271 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other upstream 439713 10536143 ~ 10551791 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other upstream 512705 10431802 ~ 10478799 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other upstream 623641 10348914 ~ 10367863 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other upstream 1285865 9704481 ~ 9705639 (+)
smim15 smim15,LOC107700545 other upstream 2513173 8477171 ~ 8478331 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 164887 11192724 ~ 11197803 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other downstream 266968 11294805 ~ 11311433 (+)
plp2a NA other downstream 414132 11441969 ~ 11445008 (+)
slc17a9a slc17a9a,LOC107731251,LOC107668105,LOC107549987,LOC107745761,LOC107549524 other downstream 506663 11534500 ~ 11541121 (+)
ppdpfa ppdpfa,LOC107678627,LOC107549986,LOC107745755,LOC107668053,LOC107731217,LOC108412507,LOC103034602 other downstream 534444 11562281 ~ 11564408 (+)

Expression


Co-expression Network