LOC122351105 (lrrc47,LOC107731176,LOC107745777,LOC107667988)


Basic Information

Item Value
gene id LOC122351105
gene name lrrc47,LOC107731176,LOC107745777,LOC107667988
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11160735 ~ 11166133 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247979.1
CGTTGGACAGTATGGCCGAAGAAAGCAGCTCATTCAATGTCTGGccagaaatagaaaaaacagaaaaggagaACAGGCGTGAGCTGGTGCTTCAGGGTTCAGCGGTTGACAAAAAGATCGAGAGCAGCGGCGGACTTCACGCGCGACTTTATTCCCTCTCGCTCCTGAACTACCTGGAGATCAGTCAATGTCCCAGTCTACATGAGATCCACGAGAACATCAGACATCTGTCTAATCTACAGAGTCTGGTCCTCTGCAGGAACAAGCTCACTTCAGTCCCAAAAAGCATCGGTGAACTGAAGGCGATCAAAGTCCTGGATTTGTCTGCCAACCAGCTGCAGGCTTTGCCCGAGGAGGTCTGTTCACTGAGCGAGCTCAACACTTTAAATGTCAGCTGCAACAGCATCGCTGCTCTGCCGGATGGTCTGAGCAAGTGTGTGAAGCTCGCCAGCGTCAATGTGTCTAAAAATGCACTCTCTCGACTTCCAGATGACTTGTGGTGCTCCAGCCTGGAGCTCCTCAGCAGCATCATTGCATCAGAAAACGCGATAGAGGAGCTGAGCAGTGATGTTCATAACCTGCTTGCGCTGAAGGTTTTAGATCTTTCCAACAACAAGCTCCAAGAACTTCCATCTGAGTTGGCCGATTGCCCCAAGCTGAAGGAGACCAATTTTAAAGGGAACAAGCTGAAGGACAAGAGGCTTGAGAAGATGGTGAACGGCTGCCAGACTAAATCAGTCCTAGATTACCTGAGGGCAGGTGGGAGAGGGAAAGGCAAAGCCAAGCAGCAGGATGGAGAAGTGAGCGAGAAGCTTGACGGAGGCCGTAACATCTCGAAGAAGAAAAGCGGTGCAAAGCAGAAAGGCAAAAAAGAGGCAGAGGAAGTGGATGAGCTTAATCGGATGGTTGTGAGAGTTCTGCATGTATCCGAAGCACCCACGGCTTTAACGGTCAAAGTTTCTGCAGACATCAAGGATGTTCGGCCATACATTGTGTGCTGCATTGTAAAAGGCATGAACCTCAGACAAGGAAATGCACTCAAGCGATTTCTAGTTGCTCAGACCAAACTTCATGATGAGATCTGTGCCAAAAGGACAACAGCAACCATCGCAACTCATGACCTGAGCTTGCTGAAAGCTCCTCTGTTGTATGACGCCAGGCCACCGGAAACACTGAAGatAGTTCCTCTGGGTCGTAAGGAGATGAAGGCTGTTGAACTCCTGAAGATGCTTCAACAGGAGGCACATgaacagagaaaacagaaaaaacgaCAAAATGTTTCAGGACTCCACAGATACCTTCAGCTCCTTGATGGGAAAGAACTTTACCCCTGCTTGGTTGACGCAGAGGATCATGTGGTCTCGTTCCCACCAATCACAAACAGCGAGAGGACAAAGATAAAGAAGTCCACACAAGAGCTTTTCTTAGAGGTGACGAGCTCCACCAATCTGCAGATCTGTAAAGACGTCATGGACGCTCTGATAATAAAAATGGCAGAGCTTAATAAATTAACCTTTGAAACAAAGGAGGATGCGGTCTCCGATGAAGAGGCTGATGTGAATTCAGATCGTCCCACAGAGAACCCGGACTCTCCTGAGCTAACAGTACTACAAGTGAAGGTCGTGGACGTAGATGGAAACCTTAAAGTGGTTTACCCATCGAAAACTGACCTGATGTCTGACGTCAGCAACCTAACCGTTATCCGCTAACAATATTCAACTGTTGGGTTTTCTTTCTAATTTTGTAATTCATTTACCACACTCTCCATACAGTTTTCTCTCTCatgaaattaaaagtaaaactgcCATTAACTCAAA

Function

symbol description
lrrc47 Predicted to enable RNA binding activity and phenylalanine-tRNA ligase activity. Orthologous to human LRRC47 (leucine rich repeat containing 47).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 47-like

GO:

id name namespace
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247979.1 True 1817 mRNA 0.47 7 11160735 11166133

Neighbor

gene id symbol gene type direction distance location
LOC122350694 lrrc47,LOC107731176,LOC107667988 coding upstream 132898 10991504 ~ 11027837 (+)
b3gnt7l LOC107555588,LOC107731177,LOC107668025,LOC107549282,LOC107695240,LOC107745837 coding upstream 189966 10968059 ~ 10970769 (+)
dffb dffb,LOC107745838 coding upstream 196012 10962188 ~ 10964723 (+)
LOC122351050 ajap1,LOC107731270,LOC107745781,LOC107668121,LOC107555602,LOC107695280,LOC107549259 coding upstream 455193 10659401 ~ 10705542 (+)
LOC122351073 LOC107555585,LOC107731134,LOC107695233,LOC107667986,LOC107745826,LOC101883956 coding upstream 603475 10552901 ~ 10557260 (+)
mad2l2 mad2l2,si:dkey-23c22.2,LOC107549323,LOC107731212,LOC107668049,LOC107695292 coding downstream 3469 11169602 ~ 11172533 (+)
LOC122351035 LOC107668047 coding downstream 7173 11173306 ~ 11183775 (+)
LOC122350429 LOC107668046 coding downstream 18391 11184524 ~ 11187447 (+)
LOC122350458 LOC107695288,LOC107549334 coding downstream 33738 11199871 ~ 11203803 (+)
tnfrsf14 NA coding downstream 41069 11207202 ~ 11212312 (+)
G62896 NA non-coding upstream 17639 10971712 ~ 11143096 (+)
G62897 NA non-coding upstream 186769 10973247 ~ 10973966 (+)
G62873 NA non-coding upstream 341318 10819217 ~ 10819417 (+)
G62868 NA non-coding upstream 360760 10799693 ~ 10799975 (+)
G62743 NA non-coding upstream 630048 10526979 ~ 10530687 (+)
LOC122350460 NA non-coding downstream 37696 11203829 ~ 11204547 (+)
G62996 NA non-coding downstream 185178 11351311 ~ 11394149 (+)
G63024 emilin3a,LOC107731182,LOC107668027,LOC107745820,LOC107550125,LOC107549958,LOC107695222 non-coding downstream 280900 11447033 ~ 11447271 (+)
G63052 NA non-coding downstream 352277 11518410 ~ 11522911 (+)
LOC122350248 NA non-coding downstream 449334 11615467 ~ 11620167 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other upstream 608944 10536143 ~ 10551791 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other upstream 681936 10431802 ~ 10478799 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other upstream 792872 10348914 ~ 10367863 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other upstream 1455096 9704481 ~ 9705639 (+)
smim15 smim15,LOC107700545 other upstream 2682404 8477171 ~ 8478331 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 26591 11192724 ~ 11197803 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other downstream 128672 11294805 ~ 11311433 (+)
plp2a NA other downstream 275836 11441969 ~ 11445008 (+)
slc17a9a slc17a9a,LOC107731251,LOC107668105,LOC107549987,LOC107745761,LOC107549524 other downstream 368367 11534500 ~ 11541121 (+)
ppdpfa ppdpfa,LOC107678627,LOC107549986,LOC107745755,LOC107668053,LOC107731217,LOC108412507,LOC103034602 other downstream 396148 11562281 ~ 11564408 (+)

Expression


Co-expression Network