RNA id: XM_043247979.1


Basic Information

Item Value
RNA id XM_043247979.1
length 1817
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC122351105
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11160735 ~ 11166133 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTGGACAGTATGGCCGAAGAAAGCAGCTCATTCAATGTCTGGccagaaatagaaaaaacagaaaaggagaACAGGCGTGAGCTGGTGCTTCAGGGTTCAGCGGTTGACAAAAAGATCGAGAGCAGCGGCGGACTTCACGCGCGACTTTATTCCCTCTCGCTCCTGAACTACCTGGAGATCAGTCAATGTCCCAGTCTACATGAGATCCACGAGAACATCAGACATCTGTCTAATCTACAGAGTCTGGTCCTCTGCAGGAACAAGCTCACTTCAGTCCCAAAAAGCATCGGTGAACTGAAGGCGATCAAAGTCCTGGATTTGTCTGCCAACCAGCTGCAGGCTTTGCCCGAGGAGGTCTGTTCACTGAGCGAGCTCAACACTTTAAATGTCAGCTGCAACAGCATCGCTGCTCTGCCGGATGGTCTGAGCAAGTGTGTGAAGCTCGCCAGCGTCAATGTGTCTAAAAATGCACTCTCTCGACTTCCAGATGACTTGTGGTGCTCCAGCCTGGAGCTCCTCAGCAGCATCATTGCATCAGAAAACGCGATAGAGGAGCTGAGCAGTGATGTTCATAACCTGCTTGCGCTGAAGGTTTTAGATCTTTCCAACAACAAGCTCCAAGAACTTCCATCTGAGTTGGCCGATTGCCCCAAGCTGAAGGAGACCAATTTTAAAGGGAACAAGCTGAAGGACAAGAGGCTTGAGAAGATGGTGAACGGCTGCCAGACTAAATCAGTCCTAGATTACCTGAGGGCAGGTGGGAGAGGGAAAGGCAAAGCCAAGCAGCAGGATGGAGAAGTGAGCGAGAAGCTTGACGGAGGCCGTAACATCTCGAAGAAGAAAAGCGGTGCAAAGCAGAAAGGCAAAAAAGAGGCAGAGGAAGTGGATGAGCTTAATCGGATGGTTGTGAGAGTTCTGCATGTATCCGAAGCACCCACGGCTTTAACGGTCAAAGTTTCTGCAGACATCAAGGATGTTCGGCCATACATTGTGTGCTGCATTGTAAAAGGCATGAACCTCAGACAAGGAAATGCACTCAAGCGATTTCTAGTTGCTCAGACCAAACTTCATGATGAGATCTGTGCCAAAAGGACAACAGCAACCATCGCAACTCATGACCTGAGCTTGCTGAAAGCTCCTCTGTTGTATGACGCCAGGCCACCGGAAACACTGAAGatAGTTCCTCTGGGTCGTAAGGAGATGAAGGCTGTTGAACTCCTGAAGATGCTTCAACAGGAGGCACATgaacagagaaaacagaaaaaacgaCAAAATGTTTCAGGACTCCACAGATACCTTCAGCTCCTTGATGGGAAAGAACTTTACCCCTGCTTGGTTGACGCAGAGGATCATGTGGTCTCGTTCCCACCAATCACAAACAGCGAGAGGACAAAGATAAAGAAGTCCACACAAGAGCTTTTCTTAGAGGTGACGAGCTCCACCAATCTGCAGATCTGTAAAGACGTCATGGACGCTCTGATAATAAAAATGGCAGAGCTTAATAAATTAACCTTTGAAACAAAGGAGGATGCGGTCTCCGATGAAGAGGCTGATGTGAATTCAGATCGTCCCACAGAGAACCCGGACTCTCCTGAGCTAACAGTACTACAAGTGAAGGTCGTGGACGTAGATGGAAACCTTAAAGTGGTTTACCCATCGAAAACTGACCTGATGTCTGACGTCAGCAACCTAACCGTTATCCGCTAACAATATTCAACTGTTGGGTTTTCTTTCTAATTTTGTAATTCATTTACCACACTCTCCATACAGTTTTCTCTCTCatgaaattaaaagtaaaactgcCATTAACTCAAA

Function

GO:

id name namespace
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93119 lncRNA upstream 17639 10971712 ~ 11143096 (+) False G62896
TU93120 lncRNA upstream 17639 10971712 ~ 11143096 (+) True G62896
TU93122 lncRNA upstream 186769 10973247 ~ 10973966 (+) True G62897
TU93123 lncRNA upstream 186769 10973247 ~ 10973966 (+) False G62897
TU93081 lncRNA upstream 341318 10819217 ~ 10819417 (+) True G62873
XR_006251601.1 lncRNA downstream 37696 11203829 ~ 11204547 (+) True LOC122350460
TU93131 lncRNA downstream 77504 11243637 ~ 11248294 (+) True G62904
TU93265 lncRNA downstream 185178 11351311 ~ 11392665 (+) True G62996
TU93268 lncRNA downstream 185178 11351311 ~ 11394149 (+) False G62996
TU93322 lncRNA downstream 276305 11442438 ~ 11445008 (+) True plp2a
XM_043247374.1 mRNA upstream 132898 10991504 ~ 11027837 (+) True LOC122350694
XM_043246748.1 mRNA upstream 189966 10968059 ~ 10970769 (+) True b3gnt7l
XM_043246749.1 mRNA upstream 196012 10962188 ~ 10964723 (+) True dffb
XM_043247894.1 mRNA upstream 455193 10659401 ~ 10705542 (+) True LOC122351050
XM_043247927.1 mRNA upstream 603475 10552901 ~ 10557260 (+) True LOC122351073
XM_043246234.1 mRNA downstream 3469 11169602 ~ 11172533 (+) True mad2l2
XM_043247866.1 mRNA downstream 7173 11173306 ~ 11183775 (+) True LOC122351035
XM_043246880.1 mRNA downstream 18391 11184524 ~ 11187447 (+) False LOC122350429
XM_043246882.1 mRNA downstream 18464 11184597 ~ 11187447 (+) True LOC122350429
XM_043246879.1 mRNA downstream 26591 11192724 ~ 11197803 (+) True LOC122350428
TU92799 other upstream 681936 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 720239 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 807622 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 1455096 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 3631667 7524635 ~ 7529068 (+) False soat1
XR_006251600.1 other downstream 26591 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 128672 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 396148 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 622220 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 631455 11797588 ~ 11797660 (+) True trnar-acg_41

Expression Profile