G62896


Basic Information

Item Value
gene id G62896
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10971712 ~ 11143096 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU93119
ccaaatacatttattaaaacagctttaaagCAGAAATTAGCTTCTGTTGATATCGATGCACATACAGATGATGGGCACAGAATTAATGTGTCATGACAATTCAATTTACaatcagaaaaatatttaaaatcttgtttCATAATGTCTAGAGCAAACACTTACTCTGTACAgacaaatattttgttaattgtacACCTGAGGAAAATGGAAAGTGGCCAGACTAAGACTGTACCTATAAAAAAGCCCTGCAATCGTGGCCTTGAGAACTGCCAGCACACAGTAGTGCAACATTTCCAGCTACCTCCTCCTCCAGGTTACTATGATATGACTTCGTAATTatactataattaaaataaatccaaatgaaagcaaacacaaaaaagttctactccacaaaataaagcaatatatgATATCATTATCAtctatatattatctatatacTATACAGTTATACTTTTGACTGAAAAATTAATACTATTGGGTATGTGTCAGGAATCGATGCGAAAAGTTAAGTTTTGGATCACTCTCTGCActctaaaataattgtttaggctgatttatttaaattaataatgatagtaataattaattagACATCGCAGTAATGCCACACCAGTGAATCATGTGAGTAAGAGTTGATTCATGTCAGTTATATAATGCATGCAAGCTCTTAACAATGCATTATGCCTATTGGGGTTGTGCCTTGAAAATTCCCTTGCTTATCATGTCTCACATAATAGGAAAACTATGACGACATACCTATATTCAGTCTTCTCTGTGtgcaaatactttaaaatgGGACATTATGGCTTATTTTCAGGCATAGGATCAGACTCAAACTGCCTTTATGTTATTTCTTCTCTTCGGTCTCAATGATTTTATAAGCACAACTGAACTAAAGCACAATCCAACAGAACAGCACAGTTTAATGCCGATGATACCCAGCGATTTAACACATCACGCACTAGACAAAACCATTTACGTGCCGAGAGTTTCTCTAATACTGAAGCAAATGCAAAGACCAAACATACGAAATAATAGTCTAAGAGCATCATCATCCCTTATGGCTCTTTATTCTCTCAGCAGTGGCCTCTCATATTGGCAACATCTCTGTTCCAGGTCTCGATTTTCTGAGAAGCACCAAGGCAGGTCTATGACTACTATTAGCCCTTGCCCTTtccaagaaacatttttttttttgttatccaAATTTTGCAAGGTGGGTGGTGCAGGAAACTTAAGCATCTGAATCAGATACAAGGTTCAAATCTCTTGAACAGAATGTTTGCGTTCTTTTCAAAGACTAAATTTTACGTTTGGCTATGATGctaacaatgttttaaaaaccattaaatgTCAAAGTGCTACAATCACAAAATATTCACATACAcctcacacacgcgcacacacacacactaaacaaacAAGTATAAAAATTCTCAaatagattacaaaaaaaatccaggTGATCCACCTGAAAAGGTAAACAGCAAAATACAGACTGCGTATCTGGTCATAAATGTGTTTCAGTTCAAGTATTTTTGTTCGCACGCACATTTTTGATCTTTTACATTCATTAATGGGTACATTTTATATCAGGTGTCAAAGACAATAATGATGCTGTCTAGATTTATTTCTAAATCAGTACAGCAATAATGCATCATTTGAAACCTGATATAAAGTAGATttgtgtgagttttttttttgattattttagcaAAGCTACTAGAGGTAGCATGTAGCTATGCCTGTTGTAGTCGGTGACTGGAGGCCTTGCCTGGAAGAATTCTGGTGCGTCTGTTGATCCTGGAAGCTGGAGCAGGGATGCGACTGCCTCTGCCCAGACCTCGAGGCTTGGACTCGGATGTGATTGTTGTCGT
>TU93120
ccaaatacatttattaaaacagctttaaagCAGAAATTAGCTTCTGTTGATATCGATGCACATACAGATGATGGGCACAGAATTAATGTGTCATGACAATTCAATTTACaatcagaaaaatatttaaaatcttgtttCATAATGTCTAGAGCAAACACTTACTCTGTACAgacaaatattttgttaattgtacACCTGAGGAAAATGGAAAGTGGCCAGACTAAGACTGTACCTATAAAAAAGCCCTGCAATCGTGGCCTTGAGAACTGCCAGCACACAGTAGTGCAACATTTCCAGCTACCTCCTCCTCCAGGTTACTATGATATGACTTCGTAATTatactataattaaaataaatccaaatgaaagcaaacacaaaaaagttctactccacaaaataaagcaatatatgATATCATTATCAtctatatattatctatatacTATACAGTTATACTTTTGACTGAAAAATTAATACTATTGGGTATGTGTCAGGAATCGATGCGAAAAGTTAAGTTTTGGATCACTCTCTGCActctaaaataattgtttaggctgatttatttaaattaataatgatagtaataattaattagACATCGCAGTAATGCCACACCAGTGAATCATGTGAGTAAGAGTTGATTCATGTCAGTTATATAATGCATGCCTCAGAATTGAGCTGTAGAAGCTCTTAACAATGCATTATGCCTATTGGGGTTGTGCCTTGAAAATTCCCTTGCTTATCATGTCTCACATAATAGGAAAACTATGACGACATACCTATATTCAGTCTTCTCTGTGtgcaaatactttaaaatgGGACATTATGGCTTATTTTCAGGCATAGGATCAGACTCAAACTGCCTTTATGTTATTTCTTCTCTTCGGTCTCAATGATTTTATAAGCACAACTGAACTAAAGCACAATCCAACAGAACAGCACAGTTTAATGCCGATGATACCCAGCGATTTAACACATCACGCACTAGACAAAACCATTTACGTGCCGAGAGTTTCTCTAATACTGAAGCAAATGCAAAGACCAAACATACGAAATAATAGTCTAAGAGCATCATCATCCCTTATGGCTCTTTATTCTCTCAGCAGTGGCCTCTCATATTGGCAACATCTCTGTTCCAGGTCTCGATTTTCTGAGAAGCACCAAGGCAGGTCTATGACTACTATTAGCCCTTGCCCTTtccaagaaacattttttttttttttttgttatccaAATTTTGCAAGGTGGGTGGTGCAGGAAACTTAAGCATCTGAATCAGATACAAGGTTCAAATCTCTTGAACAGAATGTTTGCGTTCTTTTCAAAGACTAAATTTTACGTTTGGCTATGATGctaacaatgttttaaaaaccattaaatgTCAAAGTGCTACAATCACAAAATATTCACATACAcctcacacacgcgcacacacacacactaaacaaacAAGTATAAAAATTCTCAaatagattacaaaaaaaatccaggTGATCCACCTGAAAAGGTAAACAGCAAAATACAGACTGCGTATCTGGTCATAAATGTGTTTCAGTTCAAGTATTTTTGTTCGCACGCACATTTTTGATCTTTTACATTCATTAATGGGTACATTTTATATCAGGTGTCAAAGACAATAATGATGCTGTCTAGATTTATTTCTAAATCAGTACAGCAATAATGCATCATTTGAAACCTGATATAAAGTAGATttgtgtgagttttttttttgattattttagcaAAGCTACTAGAGGTAGCATGTAGCTATGCCTGTTGTAGTCGGTGACTGGAGGCCTTGCCTGGAAGAATTCTGGTGCGTCTGTTGATCCTGGAAGCTGGAGCAGGGATGCGACTGCCTCTGCCCAGACCTCGAGGCTTGGACTCGGATGTGATTGTTGTCGT

Function

GO: NA

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU93119 False 1883 lncRNA 0.36 2 10971712 11143096
TU93120 True 1906 lncRNA 0.36 2 10971712 11143096

Neighbor

gene id symbol gene type direction distance location
b3gnt7l LOC107555588,LOC107731177,LOC107668025,LOC107549282,LOC107695240,LOC107745837 coding upstream 943 10968059 ~ 10970769 (+)
dffb dffb,LOC107745838 coding upstream 6989 10962188 ~ 10964723 (+)
LOC122351050 ajap1,LOC107731270,LOC107745781,LOC107668121,LOC107555602,LOC107695280,LOC107549259 coding upstream 266170 10659401 ~ 10705542 (+)
LOC122351073 LOC107555585,LOC107731134,LOC107695233,LOC107667986,LOC107745826,LOC101883956 coding upstream 414452 10552901 ~ 10557260 (+)
LOC122349965 ela2,LOC107668061,LOC107555594,LOC107731230,LOC102217447,LOC107745828 coding upstream 436152 10533737 ~ 10535560 (+)
LOC122351105 lrrc47,LOC107731176,LOC107745777,LOC107667988 coding downstream 17639 11160735 ~ 11166133 (+)
mad2l2 mad2l2,si:dkey-23c22.2,LOC107549323,LOC107731212,LOC107668049,LOC107695292 coding downstream 26506 11169602 ~ 11172533 (+)
LOC122351035 LOC107668047 coding downstream 30210 11173306 ~ 11183775 (+)
LOC122350429 LOC107668046 coding downstream 41428 11184524 ~ 11187447 (+)
LOC122350458 LOC107695288,LOC107549334 coding downstream 56775 11199871 ~ 11203803 (+)
G62873 NA non-coding upstream 152295 10819217 ~ 10819417 (+)
G62868 NA non-coding upstream 171737 10799693 ~ 10799975 (+)
G62743 NA non-coding upstream 441025 10526979 ~ 10530687 (+)
G62693 NA non-coding upstream 487113 10445678 ~ 10484599 (+)
G62739 NA non-coding upstream 549150 10421853 ~ 10422562 (+)
G62904 LOC107549999,LOC107731193 non-coding downstream 12922 11156018 ~ 11248294 (+)
G62909 NA non-coding downstream 13912 11157008 ~ 11272858 (+)
LOC122350460 NA non-coding downstream 60733 11203829 ~ 11204547 (+)
G62996 NA non-coding downstream 208215 11351311 ~ 11394149 (+)
G63024 emilin3a,LOC107731182,LOC107668027,LOC107745820,LOC107550125,LOC107549958,LOC107695222 non-coding downstream 303937 11447033 ~ 11447271 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other upstream 419921 10536143 ~ 10551791 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other upstream 492913 10431802 ~ 10478799 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other upstream 603849 10348914 ~ 10367863 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other upstream 1266073 9704481 ~ 9705639 (+)
smim15 smim15,LOC107700545 other upstream 2493381 8477171 ~ 8478331 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 49628 11192724 ~ 11197803 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other downstream 151709 11294805 ~ 11311433 (+)
plp2a NA other downstream 298873 11441969 ~ 11445008 (+)
slc17a9a slc17a9a,LOC107731251,LOC107668105,LOC107549987,LOC107745761,LOC107549524 other downstream 391404 11534500 ~ 11541121 (+)
ppdpfa ppdpfa,LOC107678627,LOC107549986,LOC107745755,LOC107668053,LOC107731217,LOC108412507,LOC103034602 other downstream 419185 11562281 ~ 11564408 (+)

Expression


Co-expression Network