RNA id: TU93120


Basic Information

Item Value
RNA id TU93120
length 1906
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G62896
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10971712 ~ 11143096 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccaaatacatttattaaaacagctttaaagCAGAAATTAGCTTCTGTTGATATCGATGCACATACAGATGATGGGCACAGAATTAATGTGTCATGACAATTCAATTTACaatcagaaaaatatttaaaatcttgtttCATAATGTCTAGAGCAAACACTTACTCTGTACAgacaaatattttgttaattgtacACCTGAGGAAAATGGAAAGTGGCCAGACTAAGACTGTACCTATAAAAAAGCCCTGCAATCGTGGCCTTGAGAACTGCCAGCACACAGTAGTGCAACATTTCCAGCTACCTCCTCCTCCAGGTTACTATGATATGACTTCGTAATTatactataattaaaataaatccaaatgaaagcaaacacaaaaaagttctactccacaaaataaagcaatatatgATATCATTATCAtctatatattatctatatacTATACAGTTATACTTTTGACTGAAAAATTAATACTATTGGGTATGTGTCAGGAATCGATGCGAAAAGTTAAGTTTTGGATCACTCTCTGCActctaaaataattgtttaggctgatttatttaaattaataatgatagtaataattaattagACATCGCAGTAATGCCACACCAGTGAATCATGTGAGTAAGAGTTGATTCATGTCAGTTATATAATGCATGCCTCAGAATTGAGCTGTAGAAGCTCTTAACAATGCATTATGCCTATTGGGGTTGTGCCTTGAAAATTCCCTTGCTTATCATGTCTCACATAATAGGAAAACTATGACGACATACCTATATTCAGTCTTCTCTGTGtgcaaatactttaaaatgGGACATTATGGCTTATTTTCAGGCATAGGATCAGACTCAAACTGCCTTTATGTTATTTCTTCTCTTCGGTCTCAATGATTTTATAAGCACAACTGAACTAAAGCACAATCCAACAGAACAGCACAGTTTAATGCCGATGATACCCAGCGATTTAACACATCACGCACTAGACAAAACCATTTACGTGCCGAGAGTTTCTCTAATACTGAAGCAAATGCAAAGACCAAACATACGAAATAATAGTCTAAGAGCATCATCATCCCTTATGGCTCTTTATTCTCTCAGCAGTGGCCTCTCATATTGGCAACATCTCTGTTCCAGGTCTCGATTTTCTGAGAAGCACCAAGGCAGGTCTATGACTACTATTAGCCCTTGCCCTTtccaagaaacattttttttttttttttgttatccaAATTTTGCAAGGTGGGTGGTGCAGGAAACTTAAGCATCTGAATCAGATACAAGGTTCAAATCTCTTGAACAGAATGTTTGCGTTCTTTTCAAAGACTAAATTTTACGTTTGGCTATGATGctaacaatgttttaaaaaccattaaatgTCAAAGTGCTACAATCACAAAATATTCACATACAcctcacacacgcgcacacacacacactaaacaaacAAGTATAAAAATTCTCAaatagattacaaaaaaaatccaggTGATCCACCTGAAAAGGTAAACAGCAAAATACAGACTGCGTATCTGGTCATAAATGTGTTTCAGTTCAAGTATTTTTGTTCGCACGCACATTTTTGATCTTTTACATTCATTAATGGGTACATTTTATATCAGGTGTCAAAGACAATAATGATGCTGTCTAGATTTATTTCTAAATCAGTACAGCAATAATGCATCATTTGAAACCTGATATAAAGTAGATttgtgtgagttttttttttgattattttagcaAAGCTACTAGAGGTAGCATGTAGCTATGCCTGTTGTAGTCGGTGACTGGAGGCCTTGCCTGGAAGAATTCTGGTGCGTCTGTTGATCCTGGAAGCTGGAGCAGGGATGCGACTGCCTCTGCCCAGACCTCGAGGCTTGGACTCGGATGTGATTGTTGTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93081 lncRNA upstream 152295 10819217 ~ 10819417 (+) True G62873
TU93076 lncRNA upstream 171737 10799693 ~ 10799975 (+) True G62868
TU93047 lncRNA upstream 422298 10549202 ~ 10549414 (+) False fhad1
TU92880 lncRNA upstream 441025 10526979 ~ 10530687 (+) True G62743
TU92803 lncRNA upstream 487113 10445678 ~ 10484599 (+) True G62693
TU93134 lncRNA downstream 12922 11156018 ~ 11248294 (+) False G62904
TU93142 lncRNA downstream 13912 11157008 ~ 11272858 (+) True G62909
XR_006251601.1 lncRNA downstream 60733 11203829 ~ 11204547 (+) True LOC122350460
TU93131 lncRNA downstream 100541 11243637 ~ 11248294 (+) True G62904
TU93265 lncRNA downstream 208215 11351311 ~ 11392665 (+) True G62996
XM_043246748.1 mRNA upstream 943 10968059 ~ 10970769 (+) True b3gnt7l
XM_043246749.1 mRNA upstream 6989 10962188 ~ 10964723 (+) True dffb
XM_043247894.1 mRNA upstream 266170 10659401 ~ 10705542 (+) True LOC122351050
XM_043247927.1 mRNA upstream 414452 10552901 ~ 10557260 (+) True LOC122351073
XM_043246118.1 mRNA upstream 419921 10536143 ~ 10551791 (+) False fhad1
XM_043247979.1 mRNA downstream 17639 11160735 ~ 11166133 (+) True LOC122351105
XM_043246234.1 mRNA downstream 26506 11169602 ~ 11172533 (+) True mad2l2
XM_043247866.1 mRNA downstream 30210 11173306 ~ 11183775 (+) True LOC122351035
XM_043246880.1 mRNA downstream 41428 11184524 ~ 11187447 (+) False LOC122350429
XM_043246882.1 mRNA downstream 41501 11184597 ~ 11187447 (+) True LOC122350429
TU92799 other upstream 492913 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 531216 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 618599 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 1266073 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 3442644 7524635 ~ 7529068 (+) False soat1
XR_006251600.1 other downstream 49628 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 151709 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 419185 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 645257 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 654492 11797588 ~ 11797660 (+) True trnar-acg_41

Expression Profile