RNA id: TU93131


Basic Information

Item Value
RNA id TU93131
length 1920
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G62904
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11156018 ~ 11248294 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCCTATCTTTAGCTCTTGCAGGTTGCCGTTGTACTGAGAGCAGTGAAAGAAGAGGCGGGCCTGCCTCTCAGAACACTGAATGAAGCCGTATGATGCTAGTAGCTTTTCAACCACTCCCGTCTCACGAATTCCCATGCCAGTTCCATTGGCAAAGCCACCATGGCCATTATTATGCAGCAGACTGGGGTCAAAACTCATCTATGGGCAAAATAAGGGCATAGGATGAGTTAAAAATGCACTTGCTCAGTTTTCAACCTTCAGCATTCTCCACACACCTGACTGCTTCACAACAGATCAGAACACAAGTGTGGGAAATGGTAAAATGGGATGAAATAGGATTTTAAATGCTGCAAGAATCaaactatgaaaaaaatatatatatttaaaagaggGGAAACATTGTCCCAATAATTTGTTGTGGCATGTAGGATTAAAGTTTCTATTCCCTGTTTGATCTGCTTAAACTGGTTTAACTCAACAGGTGTAAGAATCATTGGTTTCATAATAAACctagaaattaatattaaaaagttcatGCATTTAACCCTCTTCACactaatacatacatacacacactatatattagagtatacacacaaacaaactcgTCACCACATTCAAAGTTAGAACTATGTATTTGTGTAAAACTTCACCCACAAATCAAGTGAACTCCACGTAAATGGTTGACAAGCACTTGGTCAAATGTTAGACAATCGAAAATACATTAACCAAAAAAACCCATGTAAAGCTAAAAGCTTTACACTTGTAGTCCTAAAGCATGCGGTTACAGTGTCAGATATTCTTTGCCAGTGAGGAGGACATCAAGCTGACACAGACTGTCCCATCATGCCCACTTACAGATCGCTGATATAAGGGGGTCCGCTTTTGTTTTTTGCCCCCTGATGCACGAGAGGcatgacatgagagtgaagcAGAGCGGGGGATTGGCTGGCTTGAGGTAGAAGGGGTGGGGGCAGCAACAGGGGTATCAGAGGACTCCATCTTCAGGTGAAGGTAAGGGGTGGTAAGACACTGAAGGCACTTGTTCTGTTGTCTTGGAAGGCTGTAATGATTTGGACCAATCAATCACTTAATCGATGCTTCAGATTTGGCTCACACaagcgcacacgcacacacacacttgtaagGTTCGCCTCTCTGGCACACGTTCTAGTTAGaaaaagttgcaaaaataaagaacgaaaagcaaaaaaaaaaaaaaaaaaaaaatacaaataaaaaggcAAGTGCAGGTGTACGAACACTGCTTTTGAAAAATAGCGAACAGAAATACAAGAGAAAGACTGGGGAAACgaagggggggaaaaaagatcAGGGATTCGGTCTGCAATTGACAAAGAAAAAGGTCAAACTGAAAAGACTAGCAGACAGCAGCCCTCTCCGCACCCCAGAGGAGGACGAGGTGCGGGGAGGATGAGGAGGGCTTGGTGCAGCGTTGGGACGTGTGCTTTTTCAAAGCTGTTGAGTAGGCACAAACTTCTTGTCTCAGATCAGGTCTCGCCTTTGCTGTTAACGTTGATGGTTGGTTGCTACGCTCGTTGCGGCCTGGTTCTGTTTCTTAAATCTTTGGTTTGCTCATTTGGTTGTGTCGtgttgctttagtttttttttcccgtttgCAGCAGTGCAGTTCTTCGTCTTGGTCTCGTCTCGTCTTCAGAGTTGTTATACCGCTGGGTCGTTTTGGGGATGTTCGttaagttttctttttccttgACGTTTCTTCTGACCGATCGATGATCTGAACTTGAAGTAGGTTTCAGATGGTACAAAAATCAATTCGGTTACACTTCATACTGTTTGggggaagaaaaaacaaaacaaaaggataTTAGATCACATTGATAagatacacatgcatgtacttCAAGTATATTCtaagtatgttcatttattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251601.1 lncRNA upstream 39090 11203829 ~ 11204547 (+) True LOC122350460
TU93119 lncRNA upstream 100541 10971712 ~ 11143096 (+) False G62896
TU93120 lncRNA upstream 100541 10971712 ~ 11143096 (+) True G62896
TU93122 lncRNA upstream 269671 10973247 ~ 10973966 (+) True G62897
TU93123 lncRNA upstream 269671 10973247 ~ 10973966 (+) False G62897
TU93265 lncRNA downstream 103017 11351311 ~ 11392665 (+) True G62996
TU93268 lncRNA downstream 103017 11351311 ~ 11394149 (+) False G62996
TU93322 lncRNA downstream 194144 11442438 ~ 11445008 (+) True plp2a
TU93325 lncRNA downstream 198739 11447033 ~ 11447271 (+) True G63024
TU93355 lncRNA downstream 270116 11518410 ~ 11522911 (+) True G63052
XM_043247997.1 mRNA upstream 8153 11232914 ~ 11235484 (+) True rassf11
XM_043247998.1 mRNA upstream 8153 11233016 ~ 11235484 (+) False rassf11
XM_043246938.1 mRNA upstream 20706 11219320 ~ 11222931 (+) True LOC122350459
XM_043246931.1 mRNA upstream 24994 11212458 ~ 11218643 (+) True LOC122350456
XM_043246932.1 mRNA upstream 31325 11207202 ~ 11212312 (+) True tnfrsf14
XM_043246619.1 mRNA downstream 10253 11258547 ~ 11284209 (+) False pdzd4
XM_043246618.1 mRNA downstream 17309 11265603 ~ 11284209 (+) True pdzd4
XM_043247375.1 mRNA downstream 149084 11397378 ~ 11429768 (+) True cacna1fb
XM_043246545.1 mRNA downstream 185027 11433321 ~ 11441823 (+) True sypa
XM_043246583.1 mRNA downstream 193675 11441969 ~ 11444777 (+) False plp2a
XR_006251600.1 other upstream 45834 11192724 ~ 11197803 (+) False LOC122350428
TU92799 other upstream 764838 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 803141 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 890524 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 1537998 9704481 ~ 9705639 (+) True G62483
TU93183 other downstream 46511 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 313987 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 540059 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 549294 11797588 ~ 11797660 (+) True trnar-acg_41
XR_006251577.1 other downstream 568763 11817057 ~ 11820483 (+) False fance

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU58520 True 566 lncRNA 0.40 2 NC_048565.1 48598196 ~ 48598851 (+)
bowfin (Amia calva) TU58520 True 2817 lncRNA 0.42 3 CM030125.1 43444958 ~ 43452015 (+)
tiger barb (Puntius tetrazona) TU58520 True 613 lncRNA 0.42 1 NC_056703.1 25782979 ~ 25783591 (-)