cacna1fb (cacna1fb,LOC107668072,LOC108437577,LOC105898895,LOC103460216)


Basic Information

Item Value
gene id cacna1fb
gene name cacna1fb,LOC107668072,LOC108437577,LOC105898895,LOC103460216
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11397378 ~ 11429768 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247375.1
ATGTATGAGGAGAACCGAAAaaGGAATGGGTACTCcaatgaggaagaggagggtgGTGGCGAAgcggaagaggaggaggaggaggagggaggtggaggaggagaaggcAATGAGGGTGACgaggaagaaaaagatgagTGGGAGGAAAACGAACGTCCGAAGATGAACCGTACGGAAACACTCAACTCCACCACCAGCTCCACTGGAACGCAAAAGAAGAAGAGTCAGCATGTGAAGAAGCAGGTCCAGGGCTCCAACCAAGTCCAACGTGCTCCCAGAGCTCTTTTCTGCCTTAAATTAAACAACCCCATCCGCAGGGCTGCCCTTCACCTTGTGGAGTGGAAACCATTTGATATCTTTATTCTCTTGGCCATCTTCGCTAACTGTGTTGCTCTGGGGGTCTCCAAGCCTTTTCCCGAAGATGACTCGAATGCCACCAACCATGACCTAGAACAAGTTGAATATGTGTTTTTGATCATCTTCACGGTTGAGACGTTTCTGAAGATCCTTGCGTACGGTCTAGTCATGCACCCGAGCTCCTACATCCGAAACGGCTGGAATTTACTGGACTTTGTCATCGTCATTGTAGGTTTGTTCAGTGTGGTATTAGAGACTGCTACTCATAAATCCGGTGAAACAACTTCCCACATGCCTGGGAAACCGGGAGGTCTGGATGTCAAAGCTCTCCGGGCCTTCAGAGTCTTACGACCCCTCAGACTGGTTTCAGGAGTGCCCAgcctGCAGATTGTGTTAAACTCCATCATGAAGGCAATGGTTCCCCTGCTGCACATCTCTCTGCTTGTCCTCTTTGTCATCATCATCTATGCCATAATTGGACTGGAGCTCTTTATCGGTCGAATGCATCGCACCTGCTATTTTATAGGCACAGATAATTATGCAGACGATGATCCACTCCCGTGTGCGTTTGCAGGTCACGGTCGTCAGTGCCTTACCAATGGCTCTGAGTGCAGAGGAAAGTGGGATGGACCAAACGGCGGCATAACTAACTTTGATAACTTCTTTTTTGCCATGTTAACAGTGTTCCAATGCATCACAATGGAAGGCTGGACAGACGTCTTGTACTGGATGAATGATGCAATTGGTTTTGAGCTGCCGTGGGTTTACTTCGTAAGCCTGGTCATCTTTGGATCTTTCTTTGTTCTCAATCTTGTGTTGGGTGTGTTGAGCGGAGAATTCTCCAAGGAGAGGGAGAAGGCAAAAGCTCGAGGAGATTTCCAGAAGCTTCGTGAGAAGCAGCAGATGGAGGAAGATCTGTGTGGATATATGGACTGGATCACTCAGGCTGAGGACATTGATGAGTTTGATGAGGACGGAAACAGACGTGTGACCTTGCGTGACCTAGCTGATAAGAAGAGGGGAAAATTTGGCTGGTTCAGCCACTCAAATGAAACCCACGCAAGTCTTCCAGCCAGTGAAACGGCCTCTGAGAACACTGAAAACATAGATGAGGAACACACAGATTGTTGTGCTGCTTGCTGCGCTCGCATTATGAAGATCCCATGCTGtCGTGCCCTGCGCCGCTGGAACCGCTGCATTCGTAGAAACTGCCGTACAGCGGTGAAATCTGTGACTTTCTATTGGTTGGTGCTGATCCTGGTCTTCCTCAACACAGCTCTCAGTGCCTCCGAACATTATAACCAACCAGAATGGCTCACTGATGTTCAGGACATTGCCAATAAGGTTCTGCTCTCACTGTTCACAGTGGAGATGTTGTTGAAAATGTACAGTCTGGGGTTGCAGGCATATTTTGTGGCATTTTTTAACCGGTTTGACTGTTTTGTCGTGTGCGGTGGGATTCTGGAGACAGTTCTAGTGGAGATGGAGATCATGCCACCTCTCGGCATTTCAGTGTTGCGCTGCGTCCGCCTGCTTCGGATCTTCAAAGTCACACGCCATTGGACGGCTTTGTCCAATCTGGTGGCCTCTCTGCTGAATTCAATGAAGTCCATTGCCTCCCTGCTGCTGttgctcttcctcttcctcatcatcTTTGCTCTGCTTGGCATGCAGTTATTTGGAGGGAAGTTCAACTTTGATGAGACACAGACTAAGAGAAGCACCTTTGATTCCTTCCCTCAGGCCCTGCTAACTTGCTTTCAGATCTTAACCGGTGAAGACTGGAATGTAGTAATGTATGATGGTATTATGGCATATGGAGGCCCGGTTTTCCCTGGAATGATCGTCTGTCTTTACTTTgtgattttgttcatttgtggTAACTATATCCTGCTGAACGTCTTCTTGGCCATCGCTGTCGACAACTTAGCAGGAGGGGATGGAGACAATAAGAAGAACGAggaaaaaaaagagggagaggGTGAAGGGGAAGGTGAAGTTGAAGGAGAGAATGAAGAGGTGAAGGTGGACATGGATGATGAatatgaggaagaggaggagcccGAAGAGGGAGAAGATGAAGAAGGGAAAACGCAGCTGAATGTTGCTGACTTTGCTCCTCCTAAAGAGAAAGTCCTACCAATCCCAGAGGGCAGTGCATTCTTCTGCCTCAGCAAGACCAACCCAATAAGAGTGGGCTGCCATACCCTCATCCACCACCACATCTTCACTAATCTCATCCTGGTCTTCATCATTCTCAGCAGCATTTCCCTGGCTGCAGAGGATCCTATCAGAGCTCACTCCTTCAGAAACAATGTGTTGGGTTATGCCGATTATGCTTTCACTTCTATATTCACTGTGGAGATCTTACTAAAGATGACAGTGCATGGCGCATTCCTCCATGCGGGTTCCTTCTGTAGAAACTGGTTTAATTTGTTGGATCTTTTGGTGGTCAGTGTGTCTCTGGTCTCCTTCTTCTTACAttCGAGTGCCATCTCTGTAGTGAAGATCCTAAGGGTGCTCAGAGTTCTGAGGCCTCTTCGAGCAATCAACAGAGCCAAAGGACTCAAGCATGTggtacagtgtgtgtttgtggctaTAAGGACCATCGGAAACATCATGATCGTCACCACACTACTTCAGTTCATGTTTGCCTGCATCGGTGTTCAGCTTTTCAagGGTAAATTTTATCGTTGCACAGATGAAGCTAAAAACACTCCAGAACAGTGCAAGGGCACATTTGTGGTGTATAAAGATGGAGATGTGAGTCATCCAATGGTGAGAGAGAGGATCTGGATCAACAGCGACTTCAACTTTGATAATGTACTAATGGGAATGATGGCCCTGTTTACAGTCTCCACTTTTGAGGGCTGGCCAGCGTTGCTCTACAAGGCCATTGATGCCAATGCAGAGAATCATGGACCCATTTACAATTACCGCGTGGAGATCTCTATATTCTTCATCATCTACATCATCATCATTGCCTTCTTCATGATGAACATCTTCGTGGGTTTTGTCATCATTACGTTTCGTGAACAAGGAGAGGCTGAGTTCAAGAACTGTGAGCTGGACAAAAATCAGAGACAGTGTGTGGAATACGCCCTGAAGGCCCAGCCACTAAAGCTGTACATCCCAAAAAACCCAGTGCAATACAAGTTCTGGTCTATAATCAACTCCACAGGGTTTGAGTACATCATGTTTGTGCTGATTCTCCTCAACACCGTTACTCTGGCTGTGCAGCACTATGACCAGTCCAAACTGTTTAGTCATGTGATGGACATCCTAAATATGGTTTTCACCGGCCTTTTTACTGTGGAGATGATCATTAAACTGTTGGCTCTCAGACTCAGGCATTACTTCATCGATGCATGGAATTCCTTTGATGCTCTGATTGTGGTGGGAAGTGTGGTAGACATTGTAGTTACGGAGTTCAGTAGCTCAGAGGACAGCTCTCGTGTATCCATAACTTTCTTCCGTCTGTTTCGTGTAATGCGACTGGTTAAGTTGCTCAGCAAGGGAGAGGGCATTCGTACCCTGCTCTGGACTTTTGTGAAATCGCTCCAGGCCCTGCCATATGTTGCTCTCCTGATCGCTATGATCTTCTTCATCTACGCTGTGATTGGAATGCAGACATTTGGAAAGATCGCCATGCAGGACCACACACAAATCAACAGGAACAACAATTTTCAGACTTTTCCACAAGCTGTGCTGCTTCTTTTCagGTGTGCAACAGGTGAAGCGTGGCAGGAGATCATGTTGTCCAGTCTTCCAGGAAAGCGCTGTGACCCAGAGTCAGACTATGAGGCGGGGGAAGAATTCACATGCGGCAGCAACTTCGCCATTGTCTACTTTATCAGTTTCTTTATGCTCTGCGCCTTTCTGATTATCAATCTGTTTGTCGCCGTCATTATGGACAATTTTGACTATCTGACCCGTGATTGGTCGATTCTCGGACCGCATCACCTGGATGAGTTTAAAAGAATCTGGTCAGAGTATGACCCTGAAGCCAAGGGTCGTATAAAGCATTTGGATGTTGTGGCTTTGCTCAGGAGAATCCAGCCGCCGCTTGGATTTGGGAAGCTCTGTCCTCACCGTGTGGCCTGCAAAAGGCTGGTTGCCATGAACATGCCCCTGAACAGTGATGGTACGGTGACCTTCAACGCCACCCTGTTCGCTCTGGTCAGAACTgctctgaaaattaaaactgaGGGGAACCCTGATCAAGAGAACGAAGAACTGAGGATCATCATTAAGAAGATCTGGAAGAGAATGAAGCCCAAAATATTGGATGAGGTTATTCCACCCCCTGCTGAGGAAGAAGTGACTGTGGGTAAATTCTATGCCACATTCTTGATCCAGGACTATTTTAGGAAGTTCCggaaaaggaaagagaaagtgGGCCTGGGAGATTCAGAGAATGGTAACCCTTCAGCTTTACAGGCGGGGCTGCGAACTCTGCAGGACTTGGGGCCAGAAATGAGACTGGCCATGAACGAAGAtctggaggaggaagaggagggtcTGGAGGAGGAGCAAGAAGAGGATGACGCTCATTATAAGAATGAAAATGGGTATGCAGGCCACGCTGAGCCCTCAAGCAAAAGTCGGCGCTCCTCTTTGGCCACGACTCCCAGCGGTGCTCCTGTTCCTGTCTCAGGAGAAGGCATCTTGAACGGAGGACTGGGACGTAGGAGCTCCTTAGCAAAAACACAGAACGGTAACGGCGCTCTGGAACACGAGAATTTCAGGAGAAGAGACAGCACTCGTTCATCCTTTCATTATCAACACAAAAATGGTGTGATTGACCAGCTGCCCAGGAGATCATCATACTACAAATACCCAAGGAGGGACTCCAGGGATAGattctcctctcctctgtctcGGCGAGAGGAAGGCGGAGAGTACCCCGGAGAGCAGCGCTTCTATGGAAAAGATGAGGACAGCGAGAGCGTCATCTCTAGAGAAAGGCATGGTTTTCCAGAGGACAGCACAATGTTCCCGGGACATAGAGACATGTATGACGGACACTCTATGAGACACCCTGTCTACGGTAATCATTATGGAAACAGTTATGGTGAAGGCAGGAGGACAGCACGGAGACGACTGCTGCCAGCAACACCTACTGGGAGAAAGGCTTCATTTAACATACAGTGTTTAAGAAGACAAGGTAGCAGCGATGATCTGCCCATCCCAGGAACATACCATCAGAACTCCCCGCCCTGCAGAGCACGTTCACAGgGATACGGCAGCTATGATTCTCGTCGCAGCAGCGCTAGATCGTCCACGGGTTCAACAGCATCCTGGGCGAACACCGGCCCTCGACGGGGCCGTCTCCTCTACGCTCCCCTTATCCTTGTAGAGGAGGAGGGAGCGGGAAGCGCTGGAAGTGTAGGCATCTGGGACAAAAAGGCAGGTGCCATCGGAGTGCCTGCGTCGGTGCGGCATCCCAGTTCGGGATGGTACTCGGGACCCTCGACGGGTGGAGGGGGACAGCCGTATAGAGCCTACACCACCCTCAGAGTCCCTACCCAACTCAGTCCTCACTACAGCGAGAAGAGAGGCAGCGCTGACAGTCTGGTAGAAGCGGTCTTGATCTCTGAGGGTTTGGGATTGTATGCCAAAGACCCAAAATTTGTAGCCTTCGCCAAGCGTGAGATTGCAGATGCCTGTCACATGACCATAGATGAGATGGAAAGTGCTGCGAGTGATCTCCTGAGTCGTGGAGGCTCTGGAGAGAGTCAAGGCTTCCTGAACCACACGGACATGGGACCCGTGTACAGTGACGAGGAGCCCATCAGGAGCCACGAGGAAGAGGAGTTGGCTGATGAGATGACTTGTGTTACGTCTTTTTGAATAACAGAATAAGAGCTGATCGGGATGTCAGTGGGTGGAGCAGCAGAATCCTGACTGACCAATCACATGCTGCTCTGAGTCAGAGAAAGACTCTGCCGAGAACGGAGGTTTAGTTCTGAAATATTGTGACCGGTTCTTACTCAGTCTGTGAAAGAAACCAGCTCCAGTTTACCCTGTCAACATGGCAGTTTTAAATTCTGTAAATTCAGATCTCTGCAAGGACTCCTTTTATAAACAGCTTATCTTGTTGAacgttttatatatgtaaatgtgtttttactcCATCATTCTTATGTtcgtctgtttatttttaaacgtcATTCACAGAGGGATTCTCCTACCTAAAatatacagcattttaaattatataaatataaaatgaagaactttattaataaataattgaattattaactatttgaataattttacagCTTTGTTTCGcattttgtgtatatgtgtattttttccaCAGTTTCCCATCATAGATTCCAGTATTGCGTAAGCGTCTTTGAACATGGGTTCAGTCTTTAAGTGGTCTTTACTCCAATTCCAGCTTAAAGttcaattttgaaataaaacatgatgtTGGAACAAAAAGCACACTTTCAAGGAGAAACCGATTACTTGAGGTAGGTTGCACAGAGCCTGGCTGGAATTTCAAGGACTTTTTTtaggataataaaaaaaaacacgtgtTTTTGGAaaagttttttgtattttgttattattatttaattgtcattttttattccagttttaTACATTGATTTTGAAATGTTGATATGCCTAGCCACTTAGTCTTGTCAGATTTCTTTTACTGCTCATACCCATAGAACAGCCACAGAAACAGTGATCTATTCAGAAGAAGGACACTGTGCCCCATTCACGGGTTTCATACAGTacataacattttctaaaaataaatggccACAGATTGCAGTTGTGAACTTGTCTGTCATTGTAATCTCATTGTAATCTCCAGCATTTGCTCCCTTCCCTAACAATTTTACTTAGTTAGTGAAAACATACAGagcaatattaatttaacagcTTCTCTTGGAATATTAGAATAACTAAAGATTTATATGTGAGATTGAATGGGAGTTTATTAAACTCTGAATTatgtttgtaaacaaatataaagatGAAATGTTTCCA

Function

symbol description
cacna1fb Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in calcium ion import. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in atrium; cardiac ventricle; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in Aland Island eye disease; X-linked cone-rod dystrophy 3; congenital stationary night blindness; and congenital stationary night blindness 2A. Orthologous to human CACNA1F (calcium voltage-gated channel subunit alpha1 F).

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like

GO: NA

KEGG:

id description
K04853 CACNA1F, CAV1.4; voltage-dependent calcium channel L type alpha-1F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247375.1 True 7371 mRNA 0.46 48 11397378 11429768

Neighbor

gene id symbol gene type direction distance location
pdzd4 LOC107731264,LOC107745768,LOC107695297,LOC107549432 coding upstream 113169 11258547 ~ 11284209 (+)
rassf11 LOC107731195,LOC107550001,LOC107668034,LOC107695295,LOC107549421,LOC107745822 coding upstream 161894 11232914 ~ 11235484 (+)
LOC122350459 LOC107668090 coding upstream 174447 11219320 ~ 11222931 (+)
LOC122350456 NA coding upstream 178735 11212458 ~ 11218643 (+)
tnfrsf14 NA coding upstream 185066 11207202 ~ 11212312 (+)
sypa sypa,LOC107731262,LOC107549993,LOC107668097,LOC107549468,LOC107745764,LOC107695302,LOC108437576 coding downstream 3553 11433321 ~ 11441823 (+)
samd10a samd10a,LOC107731152,LOC107668017,LOC107745835,LOC107695303,LOC108437575 coding downstream 23813 11453581 ~ 11467956 (+)
uckl1a uckl1a,LOC107549990,LOC107668066,LOC108437574,LOC103355333 coding downstream 38653 11468421 ~ 11483679 (+)
nkain5 LOC107668065,LOC107745763,LOC107731206,LOC107549956,LOC107695305 coding downstream 77064 11506832 ~ 11512190 (+)
ythdf1 ythdf1,LOC107678560,LOC108437571,LOC107549989,LOC107668064,LOC107549491 coding downstream 83809 11513577 ~ 11521488 (+)
G62996 NA non-coding upstream 3229 11351311 ~ 11394149 (+)
G62909 NA non-coding upstream 124520 11157008 ~ 11272858 (+)
G62904 LOC107549999,LOC107731193 non-coding upstream 149084 11156018 ~ 11248294 (+)
LOC122350460 NA non-coding upstream 192831 11203829 ~ 11204547 (+)
G62896 NA non-coding upstream 254282 10971712 ~ 11143096 (+)
G63024 emilin3a,LOC107731182,LOC107668027,LOC107745820,LOC107550125,LOC107549958,LOC107695222 non-coding downstream 17265 11447033 ~ 11447271 (+)
G63052 NA non-coding downstream 88642 11518410 ~ 11522911 (+)
LOC122350248 NA non-coding downstream 185699 11615467 ~ 11620167 (+)
G63094 NA non-coding downstream 189251 11619019 ~ 11619230 (+)
LOC122350251 NA non-coding downstream 319792 11749560 ~ 11752585 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other upstream 85945 11294805 ~ 11311433 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other upstream 199575 11192724 ~ 11197803 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other upstream 845587 10536143 ~ 10551791 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other upstream 918579 10431802 ~ 10478799 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other upstream 1029515 10348914 ~ 10367863 (+)
plp2a NA other downstream 12201 11441969 ~ 11445008 (+)
slc17a9a slc17a9a,LOC107731251,LOC107668105,LOC107549987,LOC107745761,LOC107549524 other downstream 104732 11534500 ~ 11541121 (+)
ppdpfa ppdpfa,LOC107678627,LOC107549986,LOC107745755,LOC107668053,LOC107731217,LOC108412507,LOC103034602 other downstream 132513 11562281 ~ 11564408 (+)
fance LOC107731142,LOC107668098,LOC107549969,LOC107678824,LOC107745739,LOC107591838,LOC107577385 other downstream 387289 11817057 ~ 11820659 (+)
si:ch211-163l21.10 LOC107731153,LOC107549947,LOC107668018,LOC107745734 other downstream 423826 11853594 ~ 11857421 (+)

Expression


Co-expression Network