sypa (sypa,LOC107731262,LOC107549993,LOC107668097,LOC107549468,LOC107745764,LOC107695302,LOC108437576)


Basic Information

Item Value
gene id sypa
gene name sypa,LOC107731262,LOC107549993,LOC107668097,LOC107549468,LOC107745764,LOC107695302,LOC108437576
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11433321 ~ 11441823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246545.1
GAACACGCAGCTAGAAGAAGCGCGTAAATAGTGACAGGTTGACGATCCCGGCGTCGGTCGGTTCACCCCGCTCGGTTTGCGCACCAAAAACGCCTTCCCGTTTTCGAAGCGCGTGAGTGACGCAACTGAAGCTGCTGTTCTGTCGATCGTTCCTCCCCCTTCGTGGGCTATTCCGCTTCCATCACTCGCCTCCCCCCGATTATAGCTGTTTCTCCTTTCTACGAGCAGGCGACTAACATGGATATTGTGAATCAGttggTTGCCAATGGGCAGTTCAGGGTGCTGAAAGTCCCATTGGGCTTCATCAAAGCCTTAGAATGGGTGTTTGCCATCTTCGCATTCTCCACCTGTGGGAGTTACTCCGGCTCCTTTAGGATGAGTGTGGAGTGCAGAAACAGATCAGACAGTGACCTGAAAATAGATGTGGATTTTGAGTATCCCTTCAGGCTTCATCAAGTGTACTTTGATGCCCCTGTCTGCAAGAATGGCCAGACTGAGCGTTTCTTCCTGGTTGGGGATTACTCATCCTCAGCAGAGTTCTTCGTCACCATAGctgtttttgcatttctgtATTCCATGGCAGCTCTCAGCATCTATGTCTTTGCCTTTGAGAAATATCGTGAGAACAATAAAGGACCTCTGATTGATTTTGGTGTGACGTGCGTATTCACCTTCATGTGGCTGGTGAGCTCGGCAGCATGGGCGAAGGGCTTGTCTGACGTCAAGACAGCTACAGACCCAGAGAAGGTTCTAGATCTGGTCCCCGCTTGTGAACAGGAAGGCAACCGTTGCCGTGAAGTTTACGACCCTGTCATGTCTGGTCTTAATACTTCTGTGGTCTTTGGCTTCCTCAACCTGATCTTGTGGACGGGAAACCTGTGGTTTGTATTTAAGGAGACCGGGATCATCGCACCATTTATGCGCCAACAGCCCGCCCAGGAGAAGCAGCCCGCCCCTGATTCCTACGGGCAGGGAGGTTATGGGCAGCAGGACCCGTATGCCGGCTCCCAGGGAGGCTACCAGCCTGATTACAGCCAGCAGGGCTACAATCAAGGAGGAGACTATGGTCAGGGTGGATATGACCAGCAGGGGGCACCCACCTCCTTTTCCAACCAGATGTGAGCGAAGAAATATCTGAGGAAGCAGGAGATGGCTGAAAGAAGTTGATCGTGTGACTCTAGCAGTGTGGTGCCTGAACCCTACCCACAATCCCACACTTCTCCCTGTTTGTGCGTCTGTGCTTACGTCTGTGAAAGATAAGAGGgtgggagggagggaggaggggAAGGGGTCTAATCCAAAATCACATATAAATGGGAGGGGCATAGAGCGGAGGAATTTTAATGTGctgtttattattgtgatgtatACAACTAAAAAAGTTTGATCAAATTTCAAAACACTTGAATACTGtaccaaaatatgaaaaaacgtATATATGAATCATATTACTATATGAATTTTTGAATCAATGATGTTGACAATAGTTGACAATAACTTGAGAGAATGTATTGTCTGTGCTGTATAGATATCattataaaagaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcttacagATATGTATGGGATTATTCCACTGTAGTCTAGTGAAATTTAGAGACcctaaataaatatgataataacAATGTGAAAAAGTTCACAAAGCCCCACAGAATTTGttccttaaaaatgtttctctctGGTGGGTCGTGGTTTGGTACaatttattccatttttatgTTGACCTCTTTTGTTTGGtattttgttggtttttatttcttcatggGTGGGATGGAGCACTGATGTGACTGAGACTGAGGCGGTGGGGGGCATCCAGGGCTACCGTGGGCAGAATCATTCCCAAACTCATGGAGGGACCACATTACTTCAACCAGCAAGCCAAACGGTCAAGGGTATCTTAAAGCATTTCTCATTTCCTGACTGAAAATGTTGACGCTGTTtagttctctctctttcaaatCTTTGTCTTATGAAAAGCACATGCATTCTCGGTGCAGAATTAGCGTGGTTGTTCATGACACAATGCATCTGAGTGCTGTGTTGATGTAGTGCTGTTTAAGTTAGAGGATgctaaaaatagatatataaatatatatatggactgggttttttttttttatttgtgttgtgtGAGCACCGGATAGAGAGAATCGATCCAGTGTGTTGAGATGTCAGTAATGTAGATATATGTGCCAGTTTCAATCTGTTATGTGCAATTTCATCAATATTTTCTCGTATCCCTCTCTCAAAAGCATATGCAATATCACAGGATTAAAGCCTGCGATATTGAGGTATATTTTCagatgtacatataaaaatatatatggagCACCTGCTCATTCTTTAACCGATATCATGAACTGCTATAGTGTGAAATTTCCATGATTTGCATCAAAACATCACGTAATGGCAGTTTAGATCAATCATTCAAAATGCAGATGATCAGAGATATCTGGTGTATATGATAGCTCGACCTCTCGGCTGGAATCAAGGTggtcattttaaattagctACGAAATGCATAATTTGAACCATGTTTATGGCAGGTTAACTGATGcaataaagttattgttttgtatagtattcaaacagtatatattaaaGTCTCGCACTTTCAGATGCAAGGATGCTGAGTAAACATCTTATTAATCTAGTAAATGCACCAGATTTGTTTTTGCCCAGAGTTGATCATCATTTTGTTTAGGGCTAATGCAGCAGACGTTGTTATGATGAGATCCTTTATATTATTGCATGATCAGATGCTCATAATGCAAGCTTACCCAGACTTATAACTAtctatttgatattttttcagattatttAATTTGCCTGCGACTTTGAGGAAAACCAGGTTTCGCTTTTGGGTAGAAGGCCATCGGCCTGCTAAATGTATTAGCGTGTCTCTCCCtccctcattctctctctctctctttctctctctttctcttccattCTCTGCTCTGGCCCACTCTTCCCCTCTTCCAAATGAATATGCTACTCAACTTCTCCGTTGTTAGTGGTGTTTGATATGTCTTGTGAAACTCTCGATGCCTTTGGGTTGTGCTGTATTTAATGTGTATGATATATTCTTAGCGTTTATGAAGATATTGATGAAAATGGTTATGACCATGCTGAAAACTCAATCACCAAAATTATCCAGAAATTCTGTTGTATTGTTCTATGGAATCCACGAAGGAAATTCAATAAAGAATAAGTTatcctgttgaaaaaaaaaaaa

Function

symbol description
sypa Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in presynaptic active zone and synaptic vesicle membrane. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 96. Orthologous to human SYP (synaptophysin).

NR:

description
PREDICTED: synaptophysin-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246545.1 True 3315 mRNA 0.41 7 11433321 11441823

Neighbor

gene id symbol gene type direction distance location
cacna1fb cacna1fb,LOC107668072,LOC108437577,LOC105898895,LOC103460216 coding upstream 3553 11397378 ~ 11429768 (+)
pdzd4 LOC107731264,LOC107745768,LOC107695297,LOC107549432 coding upstream 149112 11258547 ~ 11284209 (+)
rassf11 LOC107731195,LOC107550001,LOC107668034,LOC107695295,LOC107549421,LOC107745822 coding upstream 197837 11232914 ~ 11235484 (+)
LOC122350459 LOC107668090 coding upstream 210390 11219320 ~ 11222931 (+)
LOC122350456 NA coding upstream 214678 11212458 ~ 11218643 (+)
samd10a samd10a,LOC107731152,LOC107668017,LOC107745835,LOC107695303,LOC108437575 coding downstream 11758 11453581 ~ 11467956 (+)
uckl1a uckl1a,LOC107549990,LOC107668066,LOC108437574,LOC103355333 coding downstream 26598 11468421 ~ 11483679 (+)
nkain5 LOC107668065,LOC107745763,LOC107731206,LOC107549956,LOC107695305 coding downstream 65009 11506832 ~ 11512190 (+)
ythdf1 ythdf1,LOC107678560,LOC108437571,LOC107549989,LOC107668064,LOC107549491 coding downstream 71754 11513577 ~ 11521488 (+)
si:ch211-196c10.13 LOC107549955 coding downstream 87065 11528888 ~ 11529572 (+)
G62996 NA non-coding upstream 39172 11351311 ~ 11394149 (+)
G62909 NA non-coding upstream 160463 11157008 ~ 11272858 (+)
G62904 LOC107549999,LOC107731193 non-coding upstream 185027 11156018 ~ 11248294 (+)
LOC122350460 NA non-coding upstream 228774 11203829 ~ 11204547 (+)
G62897 NA non-coding upstream 459355 10973247 ~ 10973966 (+)
G63024 emilin3a,LOC107731182,LOC107668027,LOC107745820,LOC107550125,LOC107549958,LOC107695222 non-coding downstream 5210 11447033 ~ 11447271 (+)
G63052 NA non-coding downstream 76587 11518410 ~ 11522911 (+)
LOC122350248 NA non-coding downstream 173644 11615467 ~ 11620167 (+)
G63094 NA non-coding downstream 177196 11619019 ~ 11619230 (+)
LOC122350251 NA non-coding downstream 307737 11749560 ~ 11752585 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other upstream 121888 11294805 ~ 11311433 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other upstream 235518 11192724 ~ 11197803 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other upstream 881530 10536143 ~ 10551791 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other upstream 954522 10431802 ~ 10478799 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other upstream 1065458 10348914 ~ 10367863 (+)
plp2a NA other downstream 146 11441969 ~ 11445008 (+)
slc17a9a slc17a9a,LOC107731251,LOC107668105,LOC107549987,LOC107745761,LOC107549524 other downstream 92677 11534500 ~ 11541121 (+)
ppdpfa ppdpfa,LOC107678627,LOC107549986,LOC107745755,LOC107668053,LOC107731217,LOC108412507,LOC103034602 other downstream 120458 11562281 ~ 11564408 (+)
fance LOC107731142,LOC107668098,LOC107549969,LOC107678824,LOC107745739,LOC107591838,LOC107577385 other downstream 375234 11817057 ~ 11820659 (+)
si:ch211-163l21.10 LOC107731153,LOC107549947,LOC107668018,LOC107745734 other downstream 411771 11853594 ~ 11857421 (+)

Expression


Co-expression Network