RNA id: XM_043246545.1


Basic Information

Item Value
RNA id XM_043246545.1
length 3315
RNA type mRNA
GC content 0.41
exon number 7
gene id sypa
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11433321 ~ 11441823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACACGCAGCTAGAAGAAGCGCGTAAATAGTGACAGGTTGACGATCCCGGCGTCGGTCGGTTCACCCCGCTCGGTTTGCGCACCAAAAACGCCTTCCCGTTTTCGAAGCGCGTGAGTGACGCAACTGAAGCTGCTGTTCTGTCGATCGTTCCTCCCCCTTCGTGGGCTATTCCGCTTCCATCACTCGCCTCCCCCCGATTATAGCTGTTTCTCCTTTCTACGAGCAGGCGACTAACATGGATATTGTGAATCAGttggTTGCCAATGGGCAGTTCAGGGTGCTGAAAGTCCCATTGGGCTTCATCAAAGCCTTAGAATGGGTGTTTGCCATCTTCGCATTCTCCACCTGTGGGAGTTACTCCGGCTCCTTTAGGATGAGTGTGGAGTGCAGAAACAGATCAGACAGTGACCTGAAAATAGATGTGGATTTTGAGTATCCCTTCAGGCTTCATCAAGTGTACTTTGATGCCCCTGTCTGCAAGAATGGCCAGACTGAGCGTTTCTTCCTGGTTGGGGATTACTCATCCTCAGCAGAGTTCTTCGTCACCATAGctgtttttgcatttctgtATTCCATGGCAGCTCTCAGCATCTATGTCTTTGCCTTTGAGAAATATCGTGAGAACAATAAAGGACCTCTGATTGATTTTGGTGTGACGTGCGTATTCACCTTCATGTGGCTGGTGAGCTCGGCAGCATGGGCGAAGGGCTTGTCTGACGTCAAGACAGCTACAGACCCAGAGAAGGTTCTAGATCTGGTCCCCGCTTGTGAACAGGAAGGCAACCGTTGCCGTGAAGTTTACGACCCTGTCATGTCTGGTCTTAATACTTCTGTGGTCTTTGGCTTCCTCAACCTGATCTTGTGGACGGGAAACCTGTGGTTTGTATTTAAGGAGACCGGGATCATCGCACCATTTATGCGCCAACAGCCCGCCCAGGAGAAGCAGCCCGCCCCTGATTCCTACGGGCAGGGAGGTTATGGGCAGCAGGACCCGTATGCCGGCTCCCAGGGAGGCTACCAGCCTGATTACAGCCAGCAGGGCTACAATCAAGGAGGAGACTATGGTCAGGGTGGATATGACCAGCAGGGGGCACCCACCTCCTTTTCCAACCAGATGTGAGCGAAGAAATATCTGAGGAAGCAGGAGATGGCTGAAAGAAGTTGATCGTGTGACTCTAGCAGTGTGGTGCCTGAACCCTACCCACAATCCCACACTTCTCCCTGTTTGTGCGTCTGTGCTTACGTCTGTGAAAGATAAGAGGgtgggagggagggaggaggggAAGGGGTCTAATCCAAAATCACATATAAATGGGAGGGGCATAGAGCGGAGGAATTTTAATGTGctgtttattattgtgatgtatACAACTAAAAAAGTTTGATCAAATTTCAAAACACTTGAATACTGtaccaaaatatgaaaaaacgtATATATGAATCATATTACTATATGAATTTTTGAATCAATGATGTTGACAATAGTTGACAATAACTTGAGAGAATGTATTGTCTGTGCTGTATAGATATCattataaaagaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcttacagATATGTATGGGATTATTCCACTGTAGTCTAGTGAAATTTAGAGACcctaaataaatatgataataacAATGTGAAAAAGTTCACAAAGCCCCACAGAATTTGttccttaaaaatgtttctctctGGTGGGTCGTGGTTTGGTACaatttattccatttttatgTTGACCTCTTTTGTTTGGtattttgttggtttttatttcttcatggGTGGGATGGAGCACTGATGTGACTGAGACTGAGGCGGTGGGGGGCATCCAGGGCTACCGTGGGCAGAATCATTCCCAAACTCATGGAGGGACCACATTACTTCAACCAGCAAGCCAAACGGTCAAGGGTATCTTAAAGCATTTCTCATTTCCTGACTGAAAATGTTGACGCTGTTtagttctctctctttcaaatCTTTGTCTTATGAAAAGCACATGCATTCTCGGTGCAGAATTAGCGTGGTTGTTCATGACACAATGCATCTGAGTGCTGTGTTGATGTAGTGCTGTTTAAGTTAGAGGATgctaaaaatagatatataaatatatatatggactgggttttttttttttatttgtgttgtgtGAGCACCGGATAGAGAGAATCGATCCAGTGTGTTGAGATGTCAGTAATGTAGATATATGTGCCAGTTTCAATCTGTTATGTGCAATTTCATCAATATTTTCTCGTATCCCTCTCTCAAAAGCATATGCAATATCACAGGATTAAAGCCTGCGATATTGAGGTATATTTTCagatgtacatataaaaatatatatggagCACCTGCTCATTCTTTAACCGATATCATGAACTGCTATAGTGTGAAATTTCCATGATTTGCATCAAAACATCACGTAATGGCAGTTTAGATCAATCATTCAAAATGCAGATGATCAGAGATATCTGGTGTATATGATAGCTCGACCTCTCGGCTGGAATCAAGGTggtcattttaaattagctACGAAATGCATAATTTGAACCATGTTTATGGCAGGTTAACTGATGcaataaagttattgttttgtatagtattcaaacagtatatattaaaGTCTCGCACTTTCAGATGCAAGGATGCTGAGTAAACATCTTATTAATCTAGTAAATGCACCAGATTTGTTTTTGCCCAGAGTTGATCATCATTTTGTTTAGGGCTAATGCAGCAGACGTTGTTATGATGAGATCCTTTATATTATTGCATGATCAGATGCTCATAATGCAAGCTTACCCAGACTTATAACTAtctatttgatattttttcagattatttAATTTGCCTGCGACTTTGAGGAAAACCAGGTTTCGCTTTTGGGTAGAAGGCCATCGGCCTGCTAAATGTATTAGCGTGTCTCTCCCtccctcattctctctctctctctttctctctctttctcttccattCTCTGCTCTGGCCCACTCTTCCCCTCTTCCAAATGAATATGCTACTCAACTTCTCCGTTGTTAGTGGTGTTTGATATGTCTTGTGAAACTCTCGATGCCTTTGGGTTGTGCTGTATTTAATGTGTATGATATATTCTTAGCGTTTATGAAGATATTGATGAAAATGGTTATGACCATGCTGAAAACTCAATCACCAAAATTATCCAGAAATTCTGTTGTATTGTTCTATGGAATCCACGAAGGAAATTCAATAAAGAATAAGTTatcctgttgaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93268 lncRNA upstream 39172 11351311 ~ 11394149 (+) False G62996
TU93265 lncRNA upstream 40656 11351311 ~ 11392665 (+) True G62996
TU93142 lncRNA upstream 160463 11157008 ~ 11272858 (+) True G62909
TU93322 lncRNA downstream 615 11442438 ~ 11445008 (+) True plp2a
TU93325 lncRNA downstream 5210 11447033 ~ 11447271 (+) True G63024
TU93355 lncRNA downstream 76587 11518410 ~ 11522911 (+) True G63052
TU93361 lncRNA downstream 92742 11534565 ~ 11535069 (+) False slc17a9a
XR_006251585.1 lncRNA downstream 173644 11615467 ~ 11620167 (+) True LOC122350248
XM_043247375.1 mRNA upstream 3553 11397378 ~ 11429768 (+) True cacna1fb
XM_043246619.1 mRNA upstream 149112 11258547 ~ 11284209 (+) False pdzd4
XM_043246618.1 mRNA upstream 149112 11265603 ~ 11284209 (+) True pdzd4
XM_043247997.1 mRNA upstream 197837 11232914 ~ 11235484 (+) True rassf11
XM_043247998.1 mRNA upstream 197837 11233016 ~ 11235484 (+) False rassf11
XM_043246583.1 mRNA downstream 146 11441969 ~ 11444777 (+) False plp2a
XM_043246580.1 mRNA downstream 11758 11453581 ~ 11467956 (+) False samd10a
XM_043246579.1 mRNA downstream 11763 11453586 ~ 11467956 (+) True samd10a
XM_043246470.1 mRNA downstream 26598 11468421 ~ 11483679 (+) True uckl1a
XM_043246469.1 mRNA downstream 28143 11469966 ~ 11483679 (+) False uckl1a
TU93183 other upstream 121888 11294805 ~ 11311433 (+) True G62940
XR_006251600.1 other upstream 235518 11192724 ~ 11197803 (+) False LOC122350428
TU92799 other upstream 954522 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 992825 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 1080208 10348959 ~ 10353113 (+) False col2a1a
TU93395 other downstream 120458 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 346530 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 355765 11797588 ~ 11797660 (+) True trnar-acg_41
XR_006251577.1 other downstream 375234 11817057 ~ 11820483 (+) False fance
XR_006251698.1 other downstream 399252 11841075 ~ 11841455 (+) True LOC122351135

Expression Profile