RNA id: XM_043247997.1


Basic Information

Item Value
RNA id XM_043247997.1
length 1700
RNA type mRNA
GC content 0.47
exon number 3
gene id rassf11
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11232914 ~ 11235484 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCAGCTAAGTCAAGGATGACAAGAAGACTTCTTCATCTACACCAGGACAGCATACTGAACTGCATCTAATCTAAGTTCAAGGACTTTACTACACTTCAACTGAAGATATTTAGGAATTTTTTGATCAAGACAGAATGGAAGTAAAGGTGTATGTCGAAGGAGTCCAGCGCATAGTTTGTGGAGTCACTGACAAAACAACATGTCAGGAGGTGGTCGTCGCTTTAGCACGGGCACTTGGTCGCACTGGTCGATATACTCTGAGAGAAAAATTTAAAGAATATGAACGTAATGTGACTCCAGATGAGCGGCTCTTGGAGTCCATGGAGAAATACGGTGAGCAAGCTAAAGAGGTGCAGCTTACTTTGAAGCATATCGGTCCATCCCTTGGGGAAGAAATGAACCGACCCAAAGCCCAAATGAGGCGAGCGGAGGGGACGGGGAGAACACGGAGAGGCAGCGGGGCAATCGCCCTACACCGCCAGAGCCTCCCACCCCTGTCACGCCTTTGCCTCCACTCAGAGCCACCACCCGAGGAACCGAAGAGACCCAAGCGGAAGTCGTTAACACTAATGGAGGAAGCATGGGGTTGGCTGGAAAACTTGGGCAGAAGCGGGAAGCAGCAATCAGGACGAGATAAGGGGAAATACAAGGAGGGCAATAAAGGAAATGGGCACTCAGATAACACAACCAAAAGTTCCTTGGCCTCTGGGACGCCGCAGGCAAgagacaaaaaagacaaaaacagactTGCACAACAGCCTTTGATCAGTTGCCTTGGGAACCATGGGAGAAGCACTGATGAGAGTGCTTCATATGAGAGACGAGAGGAAAAGGAATGGAAAGGCGCAGAAGAGAACCTGAAAACCCATAAACCAGTGATACAAACAATCCACCAAGAGACCGAGAGTGCGGAGGTTGTAGAATTAAGAAGACTAGTTGTCCAACAACAGGCCAGTCTACAAGAGATAAAGCACAAAATTGAGGCAACGGACCAGTTGATCCTTGAACTTGAGCAGCAGCAAGCTACCAGGGAGCTCTCCGAGCTGCTGTCGGAAGAAGAGGAGCAGCTCAGGTTTTGGCTCAATGAGCTTAGGGCAGAGGAAGTATTTGAGAGAGACCTTCAAAAGCAGTTCCTTCAGATAAAAGAAGAAGCTGCCGAGTGCAAATCTAAGCTGGAAGAGTACAAACAGAAACTGCAAGTGATAGACTTGAGAAACTCCCAGCAGCAAACAGGTCATGAAGACGTCACTGGAGGGAATAACCAAGCAGATGTGACAAAACCCGCCCAAACAAGCGTCAAAAAAATACAGATCTCAGCAGAAGGATCGTGTGGAGATGTTGGAACAAAAAGGGTGGTGACAACGCTGGAGTCCAAACTCCCATATGTGCTCGTTTCAGCAAACCAGATATCAAATCCTCCTTTAAGTGGACCAGAAGACCTGAGGGAATGGTGGACGCGATGGTCTCAGACCCAGACTCAAACATCAGTGACAAAACATAAGATAGTTCACCGCTCTGAAATTACCATACAGTTAGGAAGCACCAGAGTTTAGGCACTCTGAAACTTCTAAAGCCCCTTACTTTTAGGTTTCACGGATACCTCATTTAAAAGTGTGCAAAGGCatgaaaatgatgtttaaaggttctgtacagtgctttgctcaaaaaacattaaacatgatACACCTTTGATtctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251601.1 lncRNA upstream 28367 11203829 ~ 11204547 (+) True LOC122350460
TU93119 lncRNA upstream 89818 10971712 ~ 11143096 (+) False G62896
TU93131 lncRNA downstream 8153 11243637 ~ 11248294 (+) True G62904
TU93265 lncRNA downstream 115827 11351311 ~ 11392665 (+) True G62996
TU93268 lncRNA downstream 115827 11351311 ~ 11394149 (+) False G62996
TU93322 lncRNA downstream 206954 11442438 ~ 11445008 (+) True plp2a
TU93325 lncRNA downstream 211549 11447033 ~ 11447271 (+) True G63024
XM_043246938.1 mRNA upstream 9983 11219320 ~ 11222931 (+) True LOC122350459
XM_043246931.1 mRNA upstream 14271 11212458 ~ 11218643 (+) True LOC122350456
XM_043246932.1 mRNA upstream 20602 11207202 ~ 11212312 (+) True tnfrsf14
XM_043246619.1 mRNA downstream 23063 11258547 ~ 11284209 (+) False pdzd4
XM_043246618.1 mRNA downstream 30119 11265603 ~ 11284209 (+) True pdzd4
XM_043247375.1 mRNA downstream 161894 11397378 ~ 11429768 (+) True cacna1fb
XM_043246545.1 mRNA downstream 197837 11433321 ~ 11441823 (+) True sypa
XM_043246583.1 mRNA downstream 206485 11441969 ~ 11444777 (+) False plp2a
XR_006251600.1 other upstream 35111 11192724 ~ 11197803 (+) False LOC122350428
TU92799 other upstream 754115 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 792418 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 879801 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 1527275 9704481 ~ 9705639 (+) True G62483
TU93183 other downstream 59321 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 326797 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 552869 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 562104 11797588 ~ 11797660 (+) True trnar-acg_41
XR_006251577.1 other downstream 581573 11817057 ~ 11820483 (+) False fance

Expression Profile