RNA id: XM_043246931.1


Basic Information

Item Value
RNA id XM_043246931.1
length 3116
RNA type mRNA
GC content 0.35
exon number 9
gene id LOC122350456
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11212458 ~ 11218643 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTATCATATAGCTAGTTGTAAAGGTATTGTTATTCGAGTTGTTTACTTGTACTACTGGTTTAGGAAAATAGCGTTGTTCTTTTTTGACTATATCAGTGCTGACGACAACACACAAATGATACTTTATGAACAAATAACACGAAGTAAACTCTTGCTTCCGCGTTGCTCTTGTGGGCGCGGCCTCAAACTCAAAATGGCGgtataaaacaaagacaaagatgGGTAGCTTTTTACAAGCAGTACGATATGAGAACGAcgtgtgttttatttcattttttgTTCTTTGGACACTTCTCCCATCTGGAAAAGCTTGTGGCCAAAGTGAATATAAATCGCCTGCTGGAGAATGTTGCCCTATGTGTAACATTGGATCAGTAGTTCTTAAGGATTGTATACATGATTTAAGCACCACATGCAAACCCTGCCCTTCAGGAACATTCATGAGTGAACCAAATGGCCTTCATAATTGTTTCACATGCAGAAACTGTGttaaaaGTCAAGGACTTTACATCTTGAGTAAATGCACTACAATACAAGACACTACCTGTGATATACTTGATGGATATTACTGCATTGATTACTCAAATTCACAGTGCAGTCATGCTCAAAAACACAGTGTTTGTAAATCAGgacaagaaacaaaaacaccagGTACAAAAACTACAAATGCAGTATGTTCGGACTGCCCTCATGGTTTTTATTCTCCATCAGGTCTAAACTGCACCAAATGGACAGAgtgTTCAGCAAGGAATGAAATAGAAACAGAACATGGCAGTTCTGTTAAAGATGCCATATGTACACCGATAAGACGGAAAAGACATGGTCTCTTATTTGCAAtagttttaataacatttctCTGCATAAGTCTATACTTTGCCCCAAAGATCACAAgttGTAAACTTAAAAACCCTGTGCAAGAAACAAACCCTGGATATACAGCACAACCCACAAACAACACAACGAAAGAAAACAGTGAGCAACAGATTGTTTCCCAAGAATCAGTTACACCACCTGCTGGTACTCTAGCAACCCTCTCATCATAGGAGCATGACATTACGTTCTTCTCCGTGTGCTGTGACCTTGACGTGGTGGAGAAGCTTGAAGTCCTTTGCTAGAGTATACATACATTTTGGACAAACTAACAACAGCAGGCTTTAACAGCATTAATCCCTGATTGATCCCTGGTTCTGTACATAAAACACAGTCAATATCATCACTGCAAAAAGTTAATAAGAAGCCTCATACAGACACagcagtttaaatgtaaaaaataggtCTCAATAGTGctaataaaagaatattatcACTGataattatcaatattgaaaatattttacagaataaGGCTAATGAGCAGCCTTTAGCTTtgttgaaggaatagttcacccaaaaatgaaaattacctcaTATTTTACTCAGctcaaagccatcctaggtgtatatgaatTTGTTCTTTCagagcttttaaaaaatgtatcctggctctttaAAGCTTGGTAATGCAGTGGATAGTGACCATTATATTGATGCTCTGTAAATTGgatatatccgcaagtactgcACCGTAAAACTAACCTGCCTTCATGGGATTTATCACATGTCCATTGAAGCAGATCGATAGGTAACTGACTGAGCGCTGATTTCTGGCTTTGTTGACTTCTGACTTGACGTACGATGTATGATGTAAGTTGCGTCATATGTTGATTCATAGGTCAGCCAAAAAACTGGAACTCGGTGTTCTCACAGAAAATAACACAAGTCTGttatttacaatacaattttttaaattagaaataattgGTACAAAAAGAGGCCTCGGAGGACATCTGATAACCCCCCGTAAATAACAAAAGTCTTTAACAAAGCATTCTAAAACATCCACAGTCCTGCAGTTTTGCTTCATGATGGCATAAGAATGGATTGAACAAACTAgatgcattaacattttaatattttgtgattcTGTCTGCCCTTACAAGTATCAACAGGCACAGTCAGAACCATCAGAATCTGCTTTACTAAATCTCATTTACTTATTGAAGAATAATCAGACAAAGGAAATATATCGCAGCACATTCAAGTATTCAAGGAAATGAGAAAGCCAACGCGAAAAGGAAATCTATATCAATAATTAGTTAGAATTTATAATTGcctattgttttaataaaaaactttgtgtaaaaaaagtGTGTCCTATATGTAGGTAGGAGATGGGGCATAGCATGCTTAATAGCATGTACATATAACAGAAGCATgatatgcaaaatgtatttatgcaagtcagtgattttcatatttttgtacagGCTATGCTTATagctataattatatatgattacatatatcattattatagCCTATGTCTGCtgtataattgtaataaatattaacgaTGTTTAGGCTACTTCTATTCGGTTTCAAACCTTGATCAGAATTTTCATGGATAAAATGTACCGGCCTAAACTACTCAAGctgaaacaaacaacaacaaaagactaaggttttgaaaatttgtCGTCCTCTTTTTCGGTAAGACGAAGAGATTTGTGTTAAAACTCAAAAAGTCATAACGcaacaaaactattaaaatactattttaaattatattagagGAGTTGTGGAGAATGCAAAAGTGAAACTATTTTACGATAGGCTTTTCGGTTCTGCCAACGATTCTTATTTagtttgatgtattttatttttagaaataatagTCTACACATTGgcaaaaagtgatttatttcactGCCAATAcaccaaaaagaaaacaattaatttataataaatggaAAGTCTCTATTCTTTCTATTTTAACTATCCCAGTAACTGCACTCAACGTTAAAAACAATCTAGTAGGAATGTAGGagccattttgtttctttattttaaaggtttatatagttaatgtcttttattttggagatgTGCCCCCTCGGCAGGAGAATGGAAGCTTAAAGGTCTGGATGTGGCCTACTGGAGAATGGCCTGCTGGGAGCACATGGTCTTTAGACCTTACCTTTTGTTTGTTGGCAGCCAAAAAACCTTGAAACCAagtttgttttaacttttatttttttttgtgatcaagTCTGCAATAAATATTCAAGAAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251601.1 lncRNA upstream 7911 11203829 ~ 11204547 (+) True LOC122350460
TU93119 lncRNA upstream 69362 10971712 ~ 11143096 (+) False G62896
TU93131 lncRNA downstream 24994 11243637 ~ 11248294 (+) True G62904
TU93265 lncRNA downstream 132668 11351311 ~ 11392665 (+) True G62996
TU93268 lncRNA downstream 132668 11351311 ~ 11394149 (+) False G62996
TU93322 lncRNA downstream 223795 11442438 ~ 11445008 (+) True plp2a
TU93325 lncRNA downstream 228390 11447033 ~ 11447271 (+) True G63024
XM_043246932.1 mRNA upstream 146 11207202 ~ 11212312 (+) True tnfrsf14
XM_043246933.1 mRNA upstream 146 11207202 ~ 11212312 (+) False tnfrsf14
XM_043246934.1 mRNA upstream 146 11207202 ~ 11212312 (+) False tnfrsf14
XM_043246935.1 mRNA upstream 146 11209229 ~ 11212312 (+) False tnfrsf14
XM_043246937.1 mRNA upstream 8655 11199871 ~ 11203803 (+) True LOC122350458
XM_043246938.1 mRNA downstream 677 11219320 ~ 11222931 (+) True LOC122350459
XM_043247997.1 mRNA downstream 14271 11232914 ~ 11235484 (+) True rassf11
XM_043247998.1 mRNA downstream 14373 11233016 ~ 11235484 (+) False rassf11
XM_043246619.1 mRNA downstream 39904 11258547 ~ 11284209 (+) False pdzd4
XM_043246618.1 mRNA downstream 46960 11265603 ~ 11284209 (+) True pdzd4
XR_006251600.1 other upstream 14655 11192724 ~ 11197803 (+) False LOC122350428
TU92799 other upstream 733659 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 771962 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 859345 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 1506819 9704481 ~ 9705639 (+) True G62483
TU93183 other downstream 76162 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 343638 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 569710 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 578945 11797588 ~ 11797660 (+) True trnar-acg_41
XR_006251577.1 other downstream 598414 11817057 ~ 11820483 (+) False fance

Expression Profile