RNA id: TU92869


Basic Information

Item Value
RNA id TU92869
length 490
RNA type TUCP
GC content 0.55
exon number 3
gene id col2a1a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10348914 ~ 10367863 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAAAACCGCGGAGCTCTGACTGACGCGGTGGGTTCTGTCTGTGTGCGCCTGGCGTCGGATCCTCCCAAATACATCCACATCCACTTCCACACTCCCCGCGAGCACAGAGCTGCCGCTCCGCCGGTTCTTCGGCGACTTTGACCCCTGAGGACCTGCATGTCTAATCTTTAGACATGTTCAGATTAGCGGATTCGCGGACTCTCCTGCTACTTGTAGCAACGCATTGCGTTTTGCTATCCCTTGTAAGATGTCAACAAGAAGATGACCAAGAAGACTTTGGCGGCTGCATCCAGGATGGCCAGCACTATGCAGACCGTGCAGTATGGAAGCCAGAAGCGtgccgtgtctgtgtgtgtgattcaggGGCAGTACTATGTGACGAGGTCATCTGTGAGGACCTGAGAGACTGTGCCAATCCCATCATTCCACCTGGAGAGTGCTGTCCCATCTGCCCAGCTGACACCGACGAACCTATCGGGTCACTTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92868 lncRNA upstream 6756 10341953 ~ 10342203 (+) True G62733
TU92867 lncRNA upstream 10290 10338105 ~ 10338669 (+) True G62732
TU92793 lncRNA upstream 56739 10233598 ~ 10292220 (+) True G62691
TU92794 lncRNA upstream 56739 10262789 ~ 10292220 (+) False G62691
TU92818 lncRNA upstream 107832 10235180 ~ 10241127 (+) True G62697
TU92876 lncRNA downstream 68740 10421853 ~ 10422562 (+) True G62739
TU92803 lncRNA downstream 92565 10445678 ~ 10484599 (+) True G62693
TU92880 lncRNA downstream 173866 10526979 ~ 10530687 (+) True G62743
TU93047 lncRNA downstream 196089 10549202 ~ 10549414 (+) False fhad1
TU93076 lncRNA downstream 446580 10799693 ~ 10799975 (+) True G62868
XM_043247532.1 mRNA upstream 19180 10327300 ~ 10329779 (+) True spryd4
XM_043247454.1 mRNA upstream 22108 10320692 ~ 10326851 (+) True porcn
XM_043246214.1 mRNA upstream 32806 10314638 ~ 10316153 (+) True magoh
XM_043246942.1 mRNA upstream 35621 10302292 ~ 10313338 (+) True uck2a
XM_043246952.1 mRNA upstream 69358 10272832 ~ 10279601 (+) True LOC122350469
XM_043246627.1 mRNA downstream 17214 10370327 ~ 10386088 (+) True cry3a
XM_043246628.1 mRNA downstream 17214 10370327 ~ 10386088 (+) False cry3a
XM_043246629.1 mRNA downstream 17214 10370327 ~ 10386088 (+) False cry3a
XM_043246630.1 mRNA downstream 17214 10370327 ~ 10386088 (+) False cry3a
XM_043246112.1 mRNA downstream 141775 10494888 ~ 10519569 (+) True LOC122349960
TU92500 other upstream 643320 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 2819891 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 2825063 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 3499248 6848481 ~ 6849711 (+) True G61713
TU91369 other upstream 3499248 6848481 ~ 6849711 (+) False G61713
TU92796 other downstream 78689 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 115761 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 839611 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 941692 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 1209168 11562281 ~ 11564408 (+) False ppdpfa