RNA id: XM_043246628.1


Basic Information

Item Value
RNA id XM_043246628.1
length 4276
RNA type mRNA
GC content 0.42
exon number 15
gene id cry3a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10370327 ~ 10386088 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAACAGAAGCAGAGCTAAACAGAGCAGGCGCAGCGCACGAGCGTCTCATGAAGTCAAGTTGACCGTCTGTGCGCCAGACCGAATTGGGGAACAGTACAGTTTCTCAGCTGTGAGAATATCGCTGTCTCGTGGGAAGAGATGATACTGTCTTCGGGACTGACATAACGGTTAAAGggtGACTCAGTGAACATGGCCCCAAATTCCATCCATTGGTTCCGGAAGGGCCTCCGTCTCCATGACAACCCTGCACTTCAGGAGGCAGTACGTGGGGCAGACACTGTTCGATGTGTCTACTTCCTGGATCCCTGGTTCGCTGGGTCGTCTAACCTTGGGGTCAACAGGTGGAGATTTCTCCTGCAGTGCCTGGATGATCTTGATTCCAATCTAAGAAAACTCAATTCCCGCCTTTTTGTCATCCGAGGACAACCAGCCAATGTTTTTCCACGCCTTTTCaagGAATGGAAAATATCCAGGTTGACCTTTGAGTATGACTCCGAACCGTTTGGAAAGGAGAGGGATGCAGCTATTAAAAAGCTTGCGATGGAGGCCGGGGTTGAAGTCATAGTCAAGATCTCACATACCCTATACAACCTTGATAAGATCATTGAACTAAATGGTGGTCAGCCTCCGCTCACTTACAAACGGTTCCAGACTCTAATCAGCCGAATGGACCCACCAGAGATGCCAGTGGAAACCCTCTCCAATACTATTATGGGCTGCTGCGTCACACCTGTCTCTGAAGACCATGGGGACAAATATGGTGTGCCCTCACTGGAAGAACTAGGATTTGACATCGAGGGACTACCTTCTGCTGTCTGGCCAGGAGGTGAAACGGAGGCTTTAACAAGGATTGAAAGGCATCTGGAGCGAAAGgcATGGGTTGCAAATTTTGAAAGACCCAGAATGAATGCCAACTCTTTGCTAGCCAGTCCGACTGGCTTGAGTCCCTACCTCCGTTTCGGCTGCCTCTCCTGCCGCCTCTTCTATTTCAAACTTACAGACCTCTACAGGAAGGTAAAGAAAAACAGCACTCCTCCACTCTCCCTCTATGGTCAGCTGCTGTGGAGGGAATTTTTCTACACTGCCGCCACCACCAACCCACGATTTGATAAGATGGAAGGTAACCCGATCTGTGTGCGCATCCCTTGGGACAAAAACCCAGAGGCTTTGGCCAAATGGGCTGAAGCTAAGACAGGTTTTCCATGGATTGATGCCATTATGACCCAGCTGAGGCAGGAGGGCTGGATCCACCACCTGGCCCGTCATGCTGTCGCTTGTTTTCTCACTCGTGGAGACCTGTGGATCAGTTGGGAAGAGGGCATGAAGGTGTTCGAGGAGCTCCTATTGGATGCTGACTGGAGTGTAAATGCAGGCAGCTGGATGTGGCTCTCCTGTAGCTCTTTCTTTCAACAGTTCTTTCATTGCTACTGTCCAGTGGGTTTCGGCAGGCGCACCGACCCTAACGGCGATTTCATTAGacGATATTTACCTATTCTCCGAGGTTTCCCTGCCAAATACATCTACGACCCATGGAACGCCCCAGACTCTGTGCAAGCCGCTGCAAAGTGCATCATTGGTGTCCATTACCCAAAACCAATGGTGAACCACGCTGAAGCGAGCCGCCTCAACATCGAGAGGATGAAGCAGATCTACCAACAGCTTTCACGCTACAGAGGACTTGGACTTCTGGCCTCCGTACCATCCACACACAATGGGAATGGGAATGGGATGGCCTATTCCCCAAGGGAACAGCAGTCCGGGACCAATACACCAAACATCTTAAAAGCACCAGCCGTATCAGCCGGTTCCAGTGGTAACAGGAGTGGAAGTATTCTGCTGAACTTTGACAGTGAAGAGCATCAGGGACCAAGTGGAattcaacaacaacagcagcagcaattAGGATACCACCACATGCCTGACACGGGACACGGCAGTCGGCTTTACAAATGTAATGTCTCGCATGACATGGCAGGTCCACAACATTCAGGACACCTGCTGCACTCAGGAGGAAGCGTGACAGGTAAGAGGGAGCGAGAGTCGGAAAGAGATCTTGACGGCGATGATGATACCCTCTCCACCTCTCACAAGTTACAACGGCAAATTGCAGAGGTCACGTCAGTTCATGCTACCAACGGGAACCAGTCGAGTATGAAAAGTTAGATGGACATATCATGGTACTGAGCAGAAGCAGATTCAAAACAAGTGGAATGACTTTAAATCTGGTTTCCTTTAAACAACTCATGTTTGGGgattgttgtatttttagtttttttttttttcagctgtttttcccccatctcttttcctttttcttacATGTTCaattgatataaatattaactgagaatttatttttatcgtTGAATGAAATTGAGTTGCTTTAAAAAGAAGTTAATGATTTCACATCCATTGACGGACAAAAACAGCCATAAAAAGATTTTTCCTCGGTAAACCcatttcattctttctcttttgccCATCTCTGCACAGTTTAGGGTTTTATTTACTGTCAAGTGATCCATACCGAGTAATATTTATCAGCTTTTACCAAGCACGATAAAGCTAAGCCTCATTGTACACTCATCGCAGCTAGGATTTGTGAGaatttttacagtttgtaaACCACAAACTACAACCATCACACAacacttttgtacatttttctcCAACATTTTCTCATTGTACAATTTCACTGATTCTCCATAGAGTGGTGTACATGCCACTTTTTGTAAACAGAAAAATTTATAcaggtatattttatatattggtGTTTCGTTCTTTGCCAGTTCAATGTATTAGTGTTTACTCagaaaattcataaataaataaatataaaatttaccAGCAGagctgacattttaaaaatagggTTTGAAGATTTctagattttaaaatcatctCCATAAAATGGTACCGCTTAACTGATTTTAAATCCATGTTTTTAACCTTCAACCCGTTTGTAAAATTGTTATCAGGGACAGAGCTGCGGAGGAATGCGGttcttgaatgtttttaaatgggCTAGAATGGCCTGTTAAATGTATCTGTAGATTAGCTGCAGTATCTTCTTCATTGTCATGCttggcagacacacacagacagctgatCTTCACGGTCAGGCCttaaacactgataaaaacGCCAACCTAAACTCTGCCAAAGCCAGGAAATGACACTGGAAAAGAACATTTTCCTAGCTCATCATTGATCTCTACAGTACATCCATGAAATAAAGCTTTACGGATCTTTAAGAAGGAAATGTATGGAAATGAAGGCACCCTGTTGTATTTCTGACCCTTGAGACTTCTTGGCAGattatacatgcattttctatttaaaaaaaatcacggatattttaaataaattcatctGTTTGTGCATGTTCAGGTAAACAAGCAAGAGCATCATCTGCTAGTGTAAATCTTTACATCAGATTTTTACATTGTCTGACATTCCAGAAATACCCAAAACATTGActcaatcacttttttttttttttttgtcataatagATCATTAGGATTGTGCAAATATTTAGTCTCTGTATTTGACAACACATGCTTTATACCAAATGCCCCTACTGACCAAATATTTAATAGCTGTTGGTATTACACCAGATTGCCaagaaataatagtaataatagtcaTAGTAATATAAACATTGTAAAGTACAAATATACGCCtctttgatcaattaaatgaaattgaaatttggCAATATGTGCTGTCTAAAGAAAAATctcattcttaaaaaaaattgatattgtttttttttttttttttattcagtgctgtGAATATCAGCCACAGCAACTGAGACTTCTGATGAATCCACTACAATGTTCACAGTATCACAAACACAGATGTTCTAATCACAAGTATTGTGCATAACTAGACCATGTATATAAAGATATGGGCCCTTGAGTTCATGTGTGGTTGTTTATCATGGTGATCTGGCAACCTCTTACTGAACTGGACTAAAGCTGTCGGGTCtgaatttgtgtttgtataGCTGGATCTGCTTTGACACAGTGACATCTGTATTGCTTTTGCCGACCAGGAGAAGTGTTCAGTTCTAATGTGAATGTTTTGATATGACAATTGTAGAAACCTCAGTGCTTTTTGACTGTAATATCTCTGTGCtattatagtttgtttttgtcactgCGGAAGAAGTGAACCATTTCTGTTTTCTCCCCATTTGAATTGCTCGtttgtttgaattttgtttttatttcctttctgtgaaataaatgtGACGTCAAGTCTAAA

Function

GO:

id name namespace
GO:0009266 response to temperature stimulus biological_process
GO:0009416 response to light stimulus biological_process
GO:0006281 DNA repair biological_process
GO:0003913 DNA photolyase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92868 lncRNA upstream 28124 10341953 ~ 10342203 (+) True G62733
TU92867 lncRNA upstream 31658 10338105 ~ 10338669 (+) True G62732
TU92793 lncRNA upstream 78107 10233598 ~ 10292220 (+) True G62691
TU92876 lncRNA downstream 35765 10421853 ~ 10422562 (+) True G62739
TU92803 lncRNA downstream 59590 10445678 ~ 10484599 (+) True G62693
TU92880 lncRNA downstream 140891 10526979 ~ 10530687 (+) True G62743
TU93047 lncRNA downstream 163114 10549202 ~ 10549414 (+) False fhad1
TU93076 lncRNA downstream 413605 10799693 ~ 10799975 (+) True G62868
XM_043246631.1 mRNA upstream 2464 10348914 ~ 10367863 (+) True col2a1a
XM_043247532.1 mRNA upstream 40548 10327300 ~ 10329779 (+) True spryd4
XM_043247454.1 mRNA upstream 43476 10320692 ~ 10326851 (+) True porcn
XM_043246214.1 mRNA upstream 54174 10314638 ~ 10316153 (+) True magoh
XM_043246942.1 mRNA upstream 56989 10302292 ~ 10313338 (+) True uck2a
XM_043246112.1 mRNA downstream 108800 10494888 ~ 10519569 (+) True LOC122349960
XM_043246113.1 mRNA downstream 108800 10494888 ~ 10519569 (+) False LOC122349960
XM_043246115.1 mRNA downstream 108800 10494888 ~ 10519569 (+) False LOC122349960
XM_043246114.1 mRNA downstream 108801 10494889 ~ 10519569 (+) False LOC122349960
XM_043246116.1 mRNA downstream 108801 10494889 ~ 10519569 (+) False LOC122349960
TU92869 other upstream 17214 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 664688 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 2841259 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 2846431 7306119 ~ 7523896 (+) True soat1
TU91369 other upstream 3520616 6848481 ~ 6849711 (+) False G61713
TU92796 other downstream 45714 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 82786 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 806636 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 908717 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 1176193 11562281 ~ 11564408 (+) False ppdpfa

Expression Profile