porcn (porcn,LOC107668076,LOC107731151,LOC107585894,LOC107745789,LOC108441640)


Basic Information

Item Value
gene id porcn
gene name porcn,LOC107668076,LOC107731151,LOC107585894,LOC107745789,LOC108441640
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10320692 ~ 10326851 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247454.1
ATGCTCTGGAAGATGATTGGTCATCAGATGGCCCTTTGGGAAGCTGTAATCGTGAACGACGGACAGCATCAATGGGAATCAGCCATCAGGCGCATTGCCAGCATCATCTGCTCTGGACCGATTGTGCTGGAAGCGCGACATGATTCTCCATATTTAGTTTAGATACTGGTCGAAAATTATATAGCTTTATCCTGGATTAAAATTGAACTAAGTAATATAAGAGAATGTGTAAAAAACCTGACATTTTATGGACCCACAGACGTATTCCTGCTGCGGTTCATCGCTGTGTGAGTTGATAGTGGGGGTGAAGcgctcatcctcctcctccgctGTCGCGCTCAGTAACGAACTGTACATCCCAGCTGTTATAATTCTCATTTAGGAGATAAAACACCTGTCGTCGATATTACAGATAGCTTACATCTCGACCGGTCAGACCTCGCATGCTGTCTGCATTGCGGTGTGAGGGTATTTAACATCTTGCAGAGtgtcatATTCAAAACAATGGGAGCTCTAAGCAAACGACAGTTTTTCCAGGAACTGGGATCCGGATGCTTGCTTCCGACTGTCCAGCACGGTCTGGAACAAGTATGGCAGCTGTTACTCATCTGCCTAGTGTGTAGGCTGCTGTGGAGATTAGGTCTGCCATCTTTCTTGAAACACCTGAGTACAGTGGCAGGTGGTTTTTATACTCTTTATCTGTTTTTCGAGCTGCACATGGTTTGGGTGGTGCTTCTCAGCCTCCTCTGCTACCTCATCCTCTTCCTGTGCCGCCATTCGAGCAGCCGAGGACCCTTCCTGTCCATCACTATCCTCATCTACCTCCTTCTGGGagAGTTACATATGATGGATACAACAACGTGGCATAAGATGAGAGGTTCCCAGATGGTAGTGGCCATGAAGGCAGTTTCTCTTGCCTTTGATTTGGACAAAGGCATAGTGGAGAAATTTCCCTCTCCGGTGGAGTTCATGGGCTACATTTACTTTGTGGGGACGGTCATCTTTGGGCCTTGGATCAGTTTCAATAGCTACATGGATGCGGTAGACAGTCGAAAATTTAGCGTTTCCTGGTTTTTGAAGTCagtcttcagctgtgtgaaGAGCCAGCTGTGTCTGGTAATTTCCAACTGTATTGCACCCTATCTCTTTCCCTATTTCATCCCGGTCTTTGGAGATAAGCTGCTCCGCAAcaaGAAACGGAAAATGAGGGGCTCTATTAAAAGGTGGCTACAGGCCTATGAGAACACCATGTCCTTCCATTTCAGTAATTACTTTGTGAGTTACCTTGGTGAGGCCACCGCCACACTGGCAGGTGCTGGTTTCACAGAGGAGAAGGACAATCTTAAGTGGGACTTGACAATAGCAAAGCCGCTAAATGTAGAGTTTCCCAGGTCTATGGTTGAAGTGGTGACTTCCTGGAACCTGCCCATGTCCCGCTGGCTCAACACCTATGTGTTCAGGAAGGCTCTCAAATATGGGAGCTTCACAGCTATTATCTTCACATACACCGCAAGCTCCTTGCTACATGGTCTAAGCTTCCACATTGGGGCAGTATTATTTACACTAGGCTTCATAACATATATTGAACACGtgcttagGAAAAGATTGTCAGtggttttaaatgcatgtgtcCTCTCCAAGAGATGCCCCTCTGACTGCAAACACAGACATAaaaagGAATTTTGGGTATATTTAATGAACGGGACTTTTAGCTTGTTAGCAGTACTACACTTAACATACCTGGGCTCAATTTTTGGCTCCAGCACAGATGACATGGATTCAGATGAGGACGGTATGGCCAGCCACACCATTGAGAAATGGACACAGCTCAGCTGGACAAGCCACTGGTTGACCTTTGGCCTTTGGGTCCTGTATCGCCTTATTCTATAAACACTGAGACCTCTGTAGACGAGAAGATGTAGGGGAGAGGATAGCAATAACTGTGATCGGATATTTTATATGGTTTTACTATAGAAGAGCTGTGGCTGTTTATGGCATCACTGTGACTTCTGGAAGAACACATCTGCAGCCCAGCGTTTccaaatacaggaaaaaaattaacGTATAGGTAATATTGATCCACACCATTGGACCACTTCTGAAGTTTTCTAAACTACCTAAAGTAAAGAAGCATCaagacttaataataaaaaaaaaaaactcagtaaGTGTGAACATGTACTTGATATTCATAGCCATTGTTGTAGTTGGTTTTGTATGATGGTTTAGGATAATTACGTCCTTgtcaaaaaaggtaaatattcTCAGTACTTTTTGTCAGAAGCTCTAAAGTGAAATCGCACAAAGTTGGTTTTGGTACGTTTTTCAGTAGTTTTTTTCCACCTCAAGTGGACTAACGACTAATACTCATGCTTATTCACTATAGCACATATCATTTGTTCATTACAGTTGTCAAACATGCCGTATAACAGTGGCCACCAAACGTGTTGCTCGAGGGCCAGTATGCTGCATAGCTTAGCTCCAGCCCtactcaaacacacctgaacaagcgATTCTTCTTCTTATGTATACttgaaacttccaggcaggtgtaTTGTAGTTAAACTCAGCAGGACgctggccctccaggaccgagtttggTGACTCCTGCCATTAAAACTTCCTTATAGGCCTCTGAATGAACATATGATAAAGTTCTAAGGGAATCCTCTGTTTTGTATGAAGTGACTCTGGTACTTCTCTGACTTTGAAACCACTGCAGACACTCAAATGAGACAGTATTAGTAGTGTTATATGCTTgttatatttaaactttttaaaaaatgtattcacaagAAATGGGAAAAGTTAAACCATACagatgtgtgtatttgttttcagtgtgtttgttttcatatttgccATTGTATTATTGCTATAGTTATTTATTACCACAATT

Function

symbol description
porcn Predicted to enable Wnt-protein binding activity and palmitoleoyltransferase activity. Acts upstream of or within Wnt protein secretion; convergent extension involved in gastrulation; and protein lipidation. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Is expressed in diencephalon; hindbrain; neural tube; spinal cord neural tube; and telencephalon. Human ortholog(s) of this gene implicated in focal dermal hypoplasia. Orthologous to human PORCN (porcupine O-acyltransferase).

NR:

description
PREDICTED: protein-serine O-palmitoleoyltransferase porcupine-like isoform X2

GO:

id name namespace
GO:0006497 protein lipidation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0061355 Wnt protein secretion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K00181 PORCN; O-palmitoleoyl transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247454.1 True 2899 mRNA 0.43 15 10320692 10326851

Neighbor

gene id symbol gene type direction distance location
magoh magoh,mgn,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding upstream 4539 10314638 ~ 10316153 (+)
uck2a uck2a,LOC107731246,LOC107668082,LOC107585889,LOC107745792,LOC107695269,LOC107549113,LOC106584056 coding upstream 7354 10302292 ~ 10313338 (+)
LOC122350469 NA coding upstream 41091 10272832 ~ 10279601 (+)
fzr1a fzr1,fzr1a,LOC105904033,LOC105895242 coding upstream 55921 10259748 ~ 10264771 (+)
nfic nfic,LOC107585880,LOC107745803,LOC107548967,LOC107695213 coding upstream 88893 10152268 ~ 10231799 (+)
spryd4 spryd4,LOC107731260,LOC107585895,LOC107585896,LOC107549155,LOC107745790,LOC107668079,LOC107695231 coding downstream 449 10327300 ~ 10329779 (+)
cry3a cry1ba,LOC107668038,LOC108441644,LOC108265656 coding downstream 43476 10370327 ~ 10386088 (+)
LOC122349960 itpr3,LOC107731245,LOC107745784 coding downstream 168037 10494888 ~ 10519569 (+)
alas2 alas2,LOC107555603,LOC107745783,LOC107549233,LOC108441648,LOC108265738,LOC107667982 coding downstream 192844 10519695 ~ 10526070 (+)
LOC122349965 ela2,LOC107668061,LOC107555594,LOC107731230,LOC102217447,LOC107745828 coding downstream 206886 10533737 ~ 10535560 (+)
G62691 NA non-coding upstream 28472 10233598 ~ 10292220 (+)
G62697 NA non-coding upstream 79565 10235180 ~ 10241127 (+)
G62704 NA non-coding upstream 166090 10154344 ~ 10154602 (+)
G62703 NA non-coding upstream 170055 10149900 ~ 10150637 (+)
G62690 NA non-coding upstream 171512 10148916 ~ 10149180 (+)
G62732 LOC107731259 non-coding downstream 11254 10338105 ~ 10338669 (+)
G62733 NA non-coding downstream 15102 10341953 ~ 10342203 (+)
G62739 NA non-coding downstream 95002 10421853 ~ 10422562 (+)
G62693 NA non-coding downstream 118827 10445678 ~ 10484599 (+)
G62743 NA non-coding downstream 200128 10526979 ~ 10530687 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other upstream 615053 9704481 ~ 9705639 (+)
smim15 smim15,LOC107700545 other upstream 1842361 8477171 ~ 8478331 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 2791606 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 3470981 6848481 ~ 6849711 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other upstream 3554149 6756105 ~ 6766543 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other downstream 22063 10348914 ~ 10367863 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other downstream 104951 10431802 ~ 10478799 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 209292 10536143 ~ 10551791 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 865873 11192724 ~ 11197803 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other downstream 967954 11294805 ~ 11311433 (+)

Expression


Co-expression Network