RNA id: XM_043247454.1


Basic Information

Item Value
RNA id XM_043247454.1
length 2899
RNA type mRNA
GC content 0.43
exon number 15
gene id porcn
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10320692 ~ 10326851 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCTCTGGAAGATGATTGGTCATCAGATGGCCCTTTGGGAAGCTGTAATCGTGAACGACGGACAGCATCAATGGGAATCAGCCATCAGGCGCATTGCCAGCATCATCTGCTCTGGACCGATTGTGCTGGAAGCGCGACATGATTCTCCATATTTAGTTTAGATACTGGTCGAAAATTATATAGCTTTATCCTGGATTAAAATTGAACTAAGTAATATAAGAGAATGTGTAAAAAACCTGACATTTTATGGACCCACAGACGTATTCCTGCTGCGGTTCATCGCTGTGTGAGTTGATAGTGGGGGTGAAGcgctcatcctcctcctccgctGTCGCGCTCAGTAACGAACTGTACATCCCAGCTGTTATAATTCTCATTTAGGAGATAAAACACCTGTCGTCGATATTACAGATAGCTTACATCTCGACCGGTCAGACCTCGCATGCTGTCTGCATTGCGGTGTGAGGGTATTTAACATCTTGCAGAGtgtcatATTCAAAACAATGGGAGCTCTAAGCAAACGACAGTTTTTCCAGGAACTGGGATCCGGATGCTTGCTTCCGACTGTCCAGCACGGTCTGGAACAAGTATGGCAGCTGTTACTCATCTGCCTAGTGTGTAGGCTGCTGTGGAGATTAGGTCTGCCATCTTTCTTGAAACACCTGAGTACAGTGGCAGGTGGTTTTTATACTCTTTATCTGTTTTTCGAGCTGCACATGGTTTGGGTGGTGCTTCTCAGCCTCCTCTGCTACCTCATCCTCTTCCTGTGCCGCCATTCGAGCAGCCGAGGACCCTTCCTGTCCATCACTATCCTCATCTACCTCCTTCTGGGagAGTTACATATGATGGATACAACAACGTGGCATAAGATGAGAGGTTCCCAGATGGTAGTGGCCATGAAGGCAGTTTCTCTTGCCTTTGATTTGGACAAAGGCATAGTGGAGAAATTTCCCTCTCCGGTGGAGTTCATGGGCTACATTTACTTTGTGGGGACGGTCATCTTTGGGCCTTGGATCAGTTTCAATAGCTACATGGATGCGGTAGACAGTCGAAAATTTAGCGTTTCCTGGTTTTTGAAGTCagtcttcagctgtgtgaaGAGCCAGCTGTGTCTGGTAATTTCCAACTGTATTGCACCCTATCTCTTTCCCTATTTCATCCCGGTCTTTGGAGATAAGCTGCTCCGCAAcaaGAAACGGAAAATGAGGGGCTCTATTAAAAGGTGGCTACAGGCCTATGAGAACACCATGTCCTTCCATTTCAGTAATTACTTTGTGAGTTACCTTGGTGAGGCCACCGCCACACTGGCAGGTGCTGGTTTCACAGAGGAGAAGGACAATCTTAAGTGGGACTTGACAATAGCAAAGCCGCTAAATGTAGAGTTTCCCAGGTCTATGGTTGAAGTGGTGACTTCCTGGAACCTGCCCATGTCCCGCTGGCTCAACACCTATGTGTTCAGGAAGGCTCTCAAATATGGGAGCTTCACAGCTATTATCTTCACATACACCGCAAGCTCCTTGCTACATGGTCTAAGCTTCCACATTGGGGCAGTATTATTTACACTAGGCTTCATAACATATATTGAACACGtgcttagGAAAAGATTGTCAGtggttttaaatgcatgtgtcCTCTCCAAGAGATGCCCCTCTGACTGCAAACACAGACATAaaaagGAATTTTGGGTATATTTAATGAACGGGACTTTTAGCTTGTTAGCAGTACTACACTTAACATACCTGGGCTCAATTTTTGGCTCCAGCACAGATGACATGGATTCAGATGAGGACGGTATGGCCAGCCACACCATTGAGAAATGGACACAGCTCAGCTGGACAAGCCACTGGTTGACCTTTGGCCTTTGGGTCCTGTATCGCCTTATTCTATAAACACTGAGACCTCTGTAGACGAGAAGATGTAGGGGAGAGGATAGCAATAACTGTGATCGGATATTTTATATGGTTTTACTATAGAAGAGCTGTGGCTGTTTATGGCATCACTGTGACTTCTGGAAGAACACATCTGCAGCCCAGCGTTTccaaatacaggaaaaaaattaacGTATAGGTAATATTGATCCACACCATTGGACCACTTCTGAAGTTTTCTAAACTACCTAAAGTAAAGAAGCATCaagacttaataataaaaaaaaaaaactcagtaaGTGTGAACATGTACTTGATATTCATAGCCATTGTTGTAGTTGGTTTTGTATGATGGTTTAGGATAATTACGTCCTTgtcaaaaaaggtaaatattcTCAGTACTTTTTGTCAGAAGCTCTAAAGTGAAATCGCACAAAGTTGGTTTTGGTACGTTTTTCAGTAGTTTTTTTCCACCTCAAGTGGACTAACGACTAATACTCATGCTTATTCACTATAGCACATATCATTTGTTCATTACAGTTGTCAAACATGCCGTATAACAGTGGCCACCAAACGTGTTGCTCGAGGGCCAGTATGCTGCATAGCTTAGCTCCAGCCCtactcaaacacacctgaacaagcgATTCTTCTTCTTATGTATACttgaaacttccaggcaggtgtaTTGTAGTTAAACTCAGCAGGACgctggccctccaggaccgagtttggTGACTCCTGCCATTAAAACTTCCTTATAGGCCTCTGAATGAACATATGATAAAGTTCTAAGGGAATCCTCTGTTTTGTATGAAGTGACTCTGGTACTTCTCTGACTTTGAAACCACTGCAGACACTCAAATGAGACAGTATTAGTAGTGTTATATGCTTgttatatttaaactttttaaaaaatgtattcacaagAAATGGGAAAAGTTAAACCATACagatgtgtgtatttgttttcagtgtgtttgttttcatatttgccATTGTATTATTGCTATAGTTATTTATTACCACAATT

Function

GO:

id name namespace
GO:0006497 protein lipidation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0061355 Wnt protein secretion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K00181 PORCN; O-palmitoleoyl transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92793 lncRNA upstream 28472 10233598 ~ 10292220 (+) True G62691
TU92794 lncRNA upstream 28472 10262789 ~ 10292220 (+) False G62691
TU92818 lncRNA upstream 79565 10235180 ~ 10241127 (+) True G62697
TU92825 lncRNA upstream 166090 10154344 ~ 10154602 (+) True G62704
TU92824 lncRNA upstream 170055 10149900 ~ 10150637 (+) True G62703
TU92867 lncRNA downstream 11254 10338105 ~ 10338669 (+) True G62732
TU92868 lncRNA downstream 15102 10341953 ~ 10342203 (+) True G62733
TU92876 lncRNA downstream 95002 10421853 ~ 10422562 (+) True G62739
TU92803 lncRNA downstream 118827 10445678 ~ 10484599 (+) True G62693
TU92880 lncRNA downstream 200128 10526979 ~ 10530687 (+) True G62743
XM_043246214.1 mRNA upstream 4539 10314638 ~ 10316153 (+) True magoh
XM_043246942.1 mRNA upstream 7354 10302292 ~ 10313338 (+) True uck2a
XM_043246952.1 mRNA upstream 41091 10272832 ~ 10279601 (+) True LOC122350469
XM_043246953.1 mRNA upstream 41091 10273151 ~ 10279601 (+) False LOC122350469
XM_043247661.1 mRNA upstream 55921 10259748 ~ 10264771 (+) True fzr1a
XM_043247532.1 mRNA downstream 449 10327300 ~ 10329779 (+) True spryd4
XM_043246631.1 mRNA downstream 22063 10348914 ~ 10367863 (+) True col2a1a
XM_043246627.1 mRNA downstream 43476 10370327 ~ 10386088 (+) True cry3a
XM_043246628.1 mRNA downstream 43476 10370327 ~ 10386088 (+) False cry3a
XM_043246629.1 mRNA downstream 43476 10370327 ~ 10386088 (+) False cry3a
TU92500 other upstream 615053 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 2791624 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 2796796 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 3470981 6848481 ~ 6849711 (+) True G61713
TU92869 other downstream 22108 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 104951 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 142023 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 865873 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 967954 11294805 ~ 11311433 (+) True G62940

Expression Profile