RNA id: XR_006251600.1


Basic Information

Item Value
RNA id XR_006251600.1
length 1734
RNA type transcript
GC content 0.40
exon number 10
gene id LOC122350428
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11192724 ~ 11197803 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACGCTTTACTTCCGTATTCCACTGTTCCTACGGGAGCTTATAGGAGTGTCGTAACTTTTTCCTATGATGTGTTACGTCGCCTTCACAGCCCATAAACCAGAAAGCAGGATTGTTTCTTCGCTTTTCAAAGGTCTTCTCAAAGCTAACACTCGCGGTTCTAAATGATTTACCATTGAATCTGAAGACTCCACAGATGATGAGGAAATCAAAAGCGCTTCACATTAATTACCCATATCATCATTCATACGTCGATGAACTGAACTTCAGCATACACCGATTTTACAGTGGAttgcttttcttctttctgcacGTCCTGCTCCCAAGTTTGAACCTACAGAGATTTATGGCATCAAAAGGAGGAGAGAAACCAATGCAACTATGACCAACAATCCAAACTTCATCTAATGTGTTGTTGAAATCATAACCGAGCTAATGAAGTGTGGAGAAGAAACATTGAACTTTGTTTTGGATTGTGTTTGGATTGTGTTATTCATTGCTGCAACTTTGAATTTCAAACTGTGTTTTAGTGCATGTGCTCATGCTGAGTATGAGATACATGGAGAATGCTGCCCCATGTGTGCACCAGgaaatcaTGTTTATTGGCACTGTACGATAGACACGAGCACAACATGTATTCCATGTCCTGTATCAACGTACATCGATGAGCCCAATGGCTTGGATAAATGCTTTCCCTGCTCTGTGTGTGATGCAAAACTAGGTTTAAAGATAAAGAAAACCTGCACACGCTCTGCAGATACTATTTGTGAGCCGTTGGAGGGATTCTACTGCACTGAGCGAAAGAAAGATAGCTGCAGATTTGCTGCGAAGCACTCTGAATGCCACCCTGGACAATATGTCAAACAAACAGGAACAGCATTTACTGATACTGTATGTGGTAACTGCATGCAAGGGACTTACTCTAATGGCTCTTACACTGCCTGTCAACCACATTCAAATTGTGAAATTAAAGGccttaaagaaacaaaaccagGAACAATGTCATCTGATGTGGAATGTGGGAAGTCAGTTCCAATTGCTCTCATTGTTGGAGTCATTGTTGGAGTCATTGTTGTCGTTTTGATGACTGCTGTTGGGATAAAACTCTATTGCACATTTAAACAGAAGAGACAAGCTATTGACAGAAatatttatttttgctccgTGCCAATACCAGAGAGTGATGGTCAGTGTGAACCAACGTCACCAGACTCAGTGACCCCTCTTATATTCAACACTAGTAGCCCAATACCTCAATCTACTGCCTGTTCTGTTTTAAGTGGAGACAATGTGACCTGATATCAGAAGAGGTGTATTGTTGCTCATTAAAGAATCCAAAAGTATCAAAGAACCTGAAGACTCCACAAATCTTAAAGGCTTTGTGTAAATTGCATCTTCTGTTCTGTTGTGAGTGATAAATAGAGGAGCTGTCAAATAATGATCAATACAATCCAAGCACACTCTCGCTAAAATGATGTACTTTGAAAGTAGGAACTGATGTCCACCCTATTTCACCAAGATCCACTCACTTTTCAACTTCTGGCATTGCCACTGCTGTGGACAACATTACTAACTGGAGACTAACAATCTAGGACCAAATGTTGAAGAAACCAGAACAGTTTATGCACCTGATTTGAACATGATCAATTTAAGGattgtattattaattgctGCTAATTTGAACTTTAAACTGATTCACACATGTGCTGAATATGAAATAAACGCATATAAACAA

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93119 lncRNA upstream 49628 10971712 ~ 11143096 (+) False G62896
TU93120 lncRNA upstream 49628 10971712 ~ 11143096 (+) True G62896
TU93122 lncRNA upstream 218758 10973247 ~ 10973966 (+) True G62897
TU93123 lncRNA upstream 218758 10973247 ~ 10973966 (+) False G62897
TU93081 lncRNA upstream 373307 10819217 ~ 10819417 (+) True G62873
XR_006251601.1 lncRNA downstream 6026 11203829 ~ 11204547 (+) True LOC122350460
TU93131 lncRNA downstream 45834 11243637 ~ 11248294 (+) True G62904
TU93265 lncRNA downstream 153508 11351311 ~ 11392665 (+) True G62996
TU93268 lncRNA downstream 153508 11351311 ~ 11394149 (+) False G62996
TU93322 lncRNA downstream 244635 11442438 ~ 11445008 (+) True plp2a
XM_043246880.1 mRNA upstream 5277 11184524 ~ 11187447 (+) False LOC122350429
XM_043246882.1 mRNA upstream 5277 11184597 ~ 11187447 (+) True LOC122350429
XM_043247866.1 mRNA upstream 8949 11173306 ~ 11183775 (+) True LOC122351035
XM_043246234.1 mRNA upstream 20191 11169602 ~ 11172533 (+) True mad2l2
XM_043247979.1 mRNA upstream 26591 11160735 ~ 11166133 (+) True LOC122351105
XM_043246937.1 mRNA downstream 2068 11199871 ~ 11203803 (+) True LOC122350458
XM_043246932.1 mRNA downstream 9399 11207202 ~ 11212312 (+) True tnfrsf14
XM_043246933.1 mRNA downstream 9399 11207202 ~ 11212312 (+) False tnfrsf14
XM_043246934.1 mRNA downstream 9399 11207202 ~ 11212312 (+) False tnfrsf14
XM_043246935.1 mRNA downstream 11426 11209229 ~ 11212312 (+) False tnfrsf14
TU92799 other upstream 713925 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 752228 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 839611 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 1487085 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 3663656 7524635 ~ 7529068 (+) False soat1
TU93183 other downstream 97002 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 364478 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 590550 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 599785 11797588 ~ 11797660 (+) True trnar-acg_41
XR_006251577.1 other downstream 619254 11817057 ~ 11820483 (+) False fance

Expression Profile