RNA id: XM_043246932.1


Basic Information

Item Value
RNA id XM_043246932.1
length 2016
RNA type mRNA
GC content 0.42
exon number 9
gene id tnfrsf14
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11207202 ~ 11212312 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

actgataagatggctgtctTTTTATAGCGAGCTTCTTGAgagggaggtctccagctgtatGAGACTTTCCCAAAATGTGTCGACTTGCCTAAAGGAGGGTTGTACTTAGAACTGAGCCAGAAGTTAAAGCTGCACCTCGTCGACACgcttctccgatgccagacagcctcgaCACGACGCCTCAGAGCGACCGAGCTTGCAGAGCACACAACAGAACAGAacacggagaagtcttctgtgacctgtcttgtgaggATGATTAAATACTTGtgagagataggacagactcgacttactttacctaacctgtggataaacaaaataaggtagaaggtgcaggagatttgagcGCCATAAAACAGTAAGTACAGCGGCTACTTCTAAGTACTTACTAGGCAATTACATTGTATTatgaacaccttaaaataaagtgttacttaaTAACGAACTGACAAAACGAGAGAAAGCAAGAACAATGAGAAGAAAAGGAGAGCAGGAGTAACAGGTGAAAACACTCAGACAAACAAGTGGGGGGATAGGTGACAAGACTCGACATCAGAAACATCTGATCAGGTAGCAAAACGGGCAGATGAGGACTAAACAAGGGGCACGGTGACGGACGGGACAAAAGAAGAACGTGGCAAACAGAAAACTCAAGCTGCAGTGTGGCTTTGCTTTTACTTGTTCACTTGTGGGAAAAGCTCCTCCCACTTGAAAGTGAGGTCCCTCCGGGCTGTGAGGACAAATATTCGACAACCGATCTTGGCGCCGCCGTTTGAGGTCAAACAAGCTGATAAGAGGGTGGACGGGGGCTAGCCTGACTCTTTCATTgAATTCAACTGACTGTTGTACTTACTCGAGGGACCATGTATGTAAAGGAAGAAGTGGATGGTGAAGTTTTCTGCCAATGCCTCCTTAAGGCTCCatcaaattaatcatttaaaggAGGGGGAACCAACCATCATGATCTGAAATAGCCTTTATAGGCATACAAACAGAGACCTAAAATATCTTCAGTGAACAGGAATGCCACGTTACCAGGAtctaattcattatttaatgtgaAGTGAAGAACAGAAAGGTTGATGAAATCTGACGATGAAACATTTTCCTTCATTTGGATGGAATAAATATCCTTGCTTGCATTTTATATGGATATATTATCGCTGAGGACCATTATATCCACAATTGCTGTCATAATAGCTGTTAGTTTTAAACTTGGTTTCTGTGGATGTGCCCATGCTGAATATGATGTGAATGGAGAATGCTGCCCCATGTGTGCCCCTGGAAACCGTGTTTATTGGCACTGTACTGTAGATACCAGTACGACATGTATTCCTTGTTCTACGTCAACTTACACAGATGAACCCAACGGACTGACTAAATGTTTTCCCTGCACCATGTGTGATTTAGCCCTacacttaaaagtaaaaaaggcCTGTACGCGCTCTGCGGATACAATCTGTGAACCACTGGAAGGATCCCATTGCATTACACTATATAAAGACTCCTGTTCATTAGCAGTGGGACACAATGAATGCAAACCTGgacaatatattaaacaaactgGTACAGCATTTACTGATACCATATGTGCAGACTGTTCAGATGGAACTTATTCAAATGGCTCTCTAATGGCCTGCCTTTCACATTCAAAGTGTGAGACTATGGGACTTAGAGAAATAAAAGCAGGAACAGCATCCTCTGATGCTGAATGTGACAAAGTGACATGGTCTGTTGGTGTTGTAGTTGGAGTCACAATTACGGTTCTCGTAGTTGTTATTGTGCCACTATTAGTATGGATCATATGCAGAAAACATAAATCGCGGCGCTCCAACAAAAgTGTTTCTTACACACCACAACAAGCAACTGAGGATGATGAATCTgcatggcAGAATCAGTTAGTCTATTAAAAACCAGTAAGAACCAAAAAAGAATCGGGTTTCCCCTTTTGACATCAAGGAATGTTTGTTcaatgaaatattgttttgaattcaaataaaaaaatatatataa

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process

KEGG:

id description
K05152 TNFRSF14, HVEM, CD270; tumor necrosis factor receptor superfamily member 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251601.1 lncRNA upstream 2655 11203829 ~ 11204547 (+) True LOC122350460
TU93119 lncRNA upstream 64106 10971712 ~ 11143096 (+) False G62896
TU93120 lncRNA upstream 64106 10971712 ~ 11143096 (+) True G62896
TU93122 lncRNA upstream 233236 10973247 ~ 10973966 (+) True G62897
TU93123 lncRNA upstream 233236 10973247 ~ 10973966 (+) False G62897
TU93131 lncRNA downstream 31325 11243637 ~ 11248294 (+) True G62904
TU93265 lncRNA downstream 138999 11351311 ~ 11392665 (+) True G62996
TU93268 lncRNA downstream 138999 11351311 ~ 11394149 (+) False G62996
TU93322 lncRNA downstream 230126 11442438 ~ 11445008 (+) True plp2a
TU93325 lncRNA downstream 234721 11447033 ~ 11447271 (+) True G63024
XM_043246937.1 mRNA upstream 3399 11199871 ~ 11203803 (+) True LOC122350458
XM_043246879.1 mRNA upstream 9399 11192724 ~ 11197803 (+) True LOC122350428
XM_043246880.1 mRNA upstream 19755 11184524 ~ 11187447 (+) False LOC122350429
XM_043246882.1 mRNA upstream 19755 11184597 ~ 11187447 (+) True LOC122350429
XM_043247866.1 mRNA upstream 23427 11173306 ~ 11183775 (+) True LOC122351035
XM_043246931.1 mRNA downstream 146 11212458 ~ 11218643 (+) True LOC122350456
XM_043246938.1 mRNA downstream 7008 11219320 ~ 11222931 (+) True LOC122350459
XM_043247997.1 mRNA downstream 20602 11232914 ~ 11235484 (+) True rassf11
XM_043247998.1 mRNA downstream 20704 11233016 ~ 11235484 (+) False rassf11
XM_043246619.1 mRNA downstream 46235 11258547 ~ 11284209 (+) False pdzd4
XR_006251600.1 other upstream 9399 11192724 ~ 11197803 (+) False LOC122350428
TU92799 other upstream 728403 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 766706 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 854089 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 1501563 9704481 ~ 9705639 (+) True G62483
TU93183 other downstream 82493 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 349969 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 576041 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 585276 11797588 ~ 11797660 (+) True trnar-acg_41
XR_006251577.1 other downstream 604745 11817057 ~ 11820483 (+) False fance

Expression Profile