LOC122351035 (LOC107668047)


Basic Information

Item Value
gene id LOC122351035
gene name LOC107668047
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11173306 ~ 11183775 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247866.1
ttttgcattttactgttttaattcatttcgaATTAATactaaatcagcttttttttgcaAGTGTGATGAATGAATTCATATTTAGTCTAAAACTACACTGTATTCAAACAGCTCACACAACACCTCTACACTCCAGATTTCTCCCAACATGGGGACAGGAGACCTGTCAGTCAATAAATGGGAAATCAAAGTAAttcagatgttttctttttaattttctcttaATGACTTTGAAAGGGGAAGCGGGTTTTAGTTCACATCATGCTTTGcatatgattaatcacatttttgggtttttttgcaaatatgaaACTTATTTAACATGAAACTAGTTTTCCCAGATGGTTTGTAGAAATTTGTGTTTCACATAGATTGCCATTACAATCTCGTCTGAACCTCTgtagaaaatataatttctttagcAAACTTAATGGTTCACTGAGAAATCAAACGCCTGGGAAGCTGGgactagatttttttaaacgttgACGATAGGAATGTTTAAATCACATATGAGGGAAGTTCGAGGATTGTATCATAATAGTTCACTgatgtgtatattaaaaaaactattagcaGTGCAGCTGCTTCTCATCATGAACATTGTGCTCTGTGTGGCAACTTGCAGTAATGCAGAATATGAAATTAATGAAGAGTGTTGCCCAATGTGTGATCCAGGAAAGCGAGTTCATAAACATTGTGATGAGTACACAAGCACAACATGTGATTCATGCCTCGTGATGACCTACACAAACACTCCCAGTGGACTGACAGAATGTCTGCCTTGTTCCTTCTGTGATCCAAGCAATGGGCTGAGAGTAAAGCAGGCATGTACATTACTATCAAATACAGTGTGTGAACCTCTGCCAGGTTATTACTGTATAGACTTCCTCTCAAACTGTATAAAGGCTATTAAACATTCGGCCTGCTCACCTGGACAATACATCAACCAAACTGAATATGAGATACACAAGCAGTGCTGCCCAAAGTGTGCCCCTGGCAACCATGTTCATTGGCACTGCACAGATGACACCAGCACAACTTGTGCTCCATGCCCTTCATTAACTTTTATTGATGAACCCAATGGCCTTAAGGAATGCTTTCCCTGTTCTATATGTGATGCAGGCTGTGGTTTAAGAGTGACTAAAGTATGCACTCGTTCATCCGATACTGTTTGTGGGCCACTGGAGAGATTCTACtgcattgaaaaaaagaaagcaagttgTACTTTAGCTATGAAACATTTAGAATGTAGCACTGGACAATACATCAAACAAGCAGGTACCGCCTCCACAGATACTATATGTGCTAACTGTACAGGTGACACATATTCAAATGGATCTTTCTCTTCCTGTTTACCACACACAAGATGTGAGACCCTGGGACTTACTGAAACAAATCCAGGAACACATTCATCTGACTCCAAATGTGGAAACCCCTCTACTGCTGTAGCAATAATTGCCCCTAGTGTTATAgttactttaatattaatactagtactatttttagtatttgttttcatatttaaacatattcagAAGAAGCAGCAATCAAAACGTTCGGTGGTTGGCGGCAGGAAAGCTGGTGAGACATTTGAAACAGAAGAACAATCTTGACAACCTGCGAATGACTACAGTTTTTAACCAACCTACATATTTCACTGCATTCACTGAAGGAGTTATTCTGCTTTAGCAGTTTGAGCCACAGTCAATGAAACAAAAAGTCAAACAGCATTAAATGATTTATCATTCTTCTATTATGAATTATCTACATATCAGTTACTAAAGAAATACTGTAGCCGTGTCTCATTTAGAAGGCTGCTGTATATGTGCAACAGACATGTTAAAGAAAAACAGGAGGAAGATATTAAGAACACATTTTAtccttttttaaagtaacgttACGTTGTAAACACCACATCTGCTCTTGTGTTTACATCAGCCGGCACCGgcattattcaaatattaatggTTGTTTACAGTGACGCAAAGAATTGTGGGTTATGTCTAGCAGTGAAGGATACACCTCATGAATTCTTCGAATTCCCACGAAAGAAGGACACATTCAAAAGTTGCATTTGTGTCCTTGTATTAAGTATTAACTTcttatattaagtaaatacaACTAAGAAATTCCAAGTTGCCAGAAATTGTACATGAGTTTGATGAGTGTAATGAGTTGTTTGAACTATGCACGCAATAGTGCACttaataattcagaaatgttgaaaatagtgATTCTGAACTAGCAGAGCTTGCATGTAAATTAACATCACTAAACAAACCTTTGTTAGATTATTCTTATTTcacttggtttttttttcaaggcaatcggtttacatgcatttctaaaataagGTCAACTAATTAGAATGTACAGTGTACTTTTAGCCTAGATGTTTTGTGAAAAAGTTTATTCTGCTAAACTACAAAAGCATAttcaaaatagacatttttaactGTATATTGCAATGATATTAGTGgtttatatttgcataatagAAAATGCTTGTTGGatagtttttgttttccacTCAGTAGTATTTGTTTGCTGTTAGTGTAAGAGTTGTATTGTACAGCATGTAGATAGGCAGGAAGTATGTAGACAGGTgcagaagcttttttttttcatgtttcatgatttcttattatattcTGAGTACAAGTAAGGAAAGACATGTTCAAAATAACCACTTCAGAGAAGGGTGTACCATTTCCTGTTCGTTCCAGTCATCTCATCATCACAACATAACAATTTATCATTACATTTGTATtacctatttttattgtttattcattcatttatttagtttttttatattttagatttcttATAAATTTTTCcttgtttatgtattttcattattgttCAATCTCATGCTTGTGGTGTTTAATAAACTGTTCTGTCTGTATGAATAGAAGTAGATAAGGGGAAATGTTTATGAACGTTTTGTATAACAGTAAGTTGAATTTGTGCTGTTCAGACAAATTGTGAACAATGACACATACGCAACTAAGATTGCTTAATAAACCGCTCATTTTATCTCCGG

Function

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 5-like

GO: NA

KEGG:

id description
K05152 TNFRSF14, HVEM, CD270; tumor necrosis factor receptor superfamily member 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247866.1 True 3049 mRNA 0.35 10 11173306 11183775

Neighbor

gene id symbol gene type direction distance location
mad2l2 mad2l2,si:dkey-23c22.2,LOC107549323,LOC107731212,LOC107668049,LOC107695292 coding upstream 773 11169602 ~ 11172533 (+)
LOC122351105 lrrc47,LOC107731176,LOC107745777,LOC107667988 coding upstream 7173 11160735 ~ 11166133 (+)
LOC122350694 lrrc47,LOC107731176,LOC107667988 coding upstream 145469 10991504 ~ 11027837 (+)
b3gnt7l LOC107555588,LOC107731177,LOC107668025,LOC107549282,LOC107695240,LOC107745837 coding upstream 202537 10968059 ~ 10970769 (+)
dffb dffb,LOC107745838 coding upstream 208583 10962188 ~ 10964723 (+)
LOC122350429 LOC107668046 coding downstream 749 11184524 ~ 11187447 (+)
LOC122350458 LOC107695288,LOC107549334 coding downstream 16096 11199871 ~ 11203803 (+)
tnfrsf14 NA coding downstream 23427 11207202 ~ 11212312 (+)
LOC122350456 NA coding downstream 28683 11212458 ~ 11218643 (+)
LOC122350459 LOC107668090 coding downstream 35545 11219320 ~ 11222931 (+)
G62896 NA non-coding upstream 30210 10971712 ~ 11143096 (+)
G62897 NA non-coding upstream 199340 10973247 ~ 10973966 (+)
G62873 NA non-coding upstream 353889 10819217 ~ 10819417 (+)
G62868 NA non-coding upstream 373331 10799693 ~ 10799975 (+)
G62743 NA non-coding upstream 642619 10526979 ~ 10530687 (+)
LOC122350460 NA non-coding downstream 20054 11203829 ~ 11204547 (+)
G62996 NA non-coding downstream 167536 11351311 ~ 11394149 (+)
G63024 emilin3a,LOC107731182,LOC107668027,LOC107745820,LOC107550125,LOC107549958,LOC107695222 non-coding downstream 263258 11447033 ~ 11447271 (+)
G63052 NA non-coding downstream 334635 11518410 ~ 11522911 (+)
LOC122350248 NA non-coding downstream 431692 11615467 ~ 11620167 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other upstream 621515 10536143 ~ 10551791 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other upstream 694507 10431802 ~ 10478799 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other upstream 805443 10348914 ~ 10367863 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other upstream 1467667 9704481 ~ 9705639 (+)
smim15 smim15,LOC107700545 other upstream 2694975 8477171 ~ 8478331 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 8949 11192724 ~ 11197803 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other downstream 111030 11294805 ~ 11311433 (+)
plp2a NA other downstream 258194 11441969 ~ 11445008 (+)
slc17a9a slc17a9a,LOC107731251,LOC107668105,LOC107549987,LOC107745761,LOC107549524 other downstream 350725 11534500 ~ 11541121 (+)
ppdpfa ppdpfa,LOC107678627,LOC107549986,LOC107745755,LOC107668053,LOC107731217,LOC108412507,LOC103034602 other downstream 378506 11562281 ~ 11564408 (+)

Expression


Co-expression Network