G62692 (cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259)


Basic Information

Item Value
gene id G62692
gene name cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10431802 ~ 10478799 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU92796
GCTAAACAGAGCAGGCGCAGCGCACGAGCGTCTCATGAAGTCAAGTTGACCGTCTGTGCGCCAGACCGAATTGGGGAACAGTATAGTTTCTCAGCTGTGAGAATATCGCTATCTCGTGGGAAGAGATGATACTGTCTTCGGGACTGACATAACGGTTAAAGggtGACTCAGTGAACATGGCCCCAAATTCCATCCATTGGTTCCGGAAGGGCCTCCGTCTCCATGACAACCCTGCACTTCAGGAGGCAGTACGTGGGGCAGACACTGTTCGATGTGTCTACTTCCTGGATCCCTGGTTCGCTGGGTCGTCTAACCTTGGGGTCAACAGGTGGAGATTTCTCCTGCAGTGCCTGGATGATCTTGATTCCAATCTAAGAAAACTCAATTCCCGCCTTTTTGTCATCCGAGGACAACCAGCCAATGTTTTTCCACGCCTTTTCaagGAATGGAAAATATCCAGGTTGACCTTTGAGTATGACTCGAACCGTTTGGAAAGGAGAGGATGCAGCTATTAAAAAGCTTGCGATGGAGGCCGGGGTTGAAGTCATAGTCAAGATCTCACATACCCTATACAACCTTGATAAGATCATTGAACTAAATGGTGGTCAGCCTCCGCTCACTTACAAACGGTTCCAGACTCTAATCAGCCGAATGGACCCACCAGAGATGCCAGTGGAAACCCTCTCCAATACTATTATGGGCTGCTGCGTCACACCTGTCTCTGAAGACCATGGGGACAAATATGGTGTGCCCTCACTGGAAGAACTAGGTGAGCTGAAAAGAGCCTTTCTATtgagtttaaaggaatagttcacccaaaaacgaatttcttgtttttcataATTGAAAATATGCTTAATAATGTTGGTAACCAATCAGCagctattataattttttttcacactatggaagtcaatggctactgGCAGCTATTTGGTTGCTATTctacaaaatgtcttcttttgtgtctAACAGAAGGAACCCATACAGATTTCTCACTTGagattgagtaaatgatgttaaGCAGACTTATCCATCGCTATCCATCTCGTGTGACCTAAAACTAATACATGCGTTTCGTAAACTGCAATACAGCAACCTACCAAGTTGTGCAAGATtagaattgttattttaaccTACATTATTTCAGGATTTGACATCGAGGACTACCTTCTGCTGTCTGGCCAGGAGGTGAAACGGAGGCTTTAACAAGGATTGAAAGGCATCTGGAGCGAAAGgcATGGGTTGCAAATTTTGAAAGACCCAGAATGAATGCCAACTCTTTGCTAGCCAGTCCGACTGGCTTGAGTCCCTACCTCCGTTTCGGCTGCCTCTCCTGCCGCCTCTTCTATTTCAAACTTACAGACCTCTACAGGAAGGTAAGTGACATGCCTTTTCCATTTATAAACCTA
>TU92799
TCAGAACAGAAGCAGAGCTAAACAGAGCAGGCGCAGCGCACGAGCGTCTCATGAAGTCAAGTTGACCGTCTGTGCGCCAGACCGAATTGGGGAACAGTATAGTTTCTCAGCTGTGAGAATATCGCTGTCTCGTGGGAAGAGATGATACTGTCTTCGGGACTGACATAACGGTTAAAGggtGACTCAGTGAACATGGCCCCAAATTCCATCCATTGGTTCCGGAAGGGCCTCCGTCTCATGACAACCCTGCACTTCAGGAGGCAGTACGTGGGGCAGACACTGTTCGATGTGTCTACTTCCTGGATCCCTGGTTCGCTGGGTCGTCTAACCTTGGGGTCAACAGGTGGAGATTTCTCCTGCAGTGCCTGGATGATCTTGATTCCAATCTAAGAAAACTCAATTCCCGCTTTTTGTCATCCGAGGACAACCAGCCAATGTTTTTCCACGCCTTTTCaagGAATGGAAAATATCCAGGTTGACCTTTGAGTATGACTCCGAACCGTTTGGAAAGGAGAGGGATGCAGCTATTAAAAAGCTTGCGATGGAGGCCGGGGTTGAAGTCATAGTCAAGATCTCACATACCCTATACAACCTTGATAAGATCATTGAACTAAATGGTGGTCAGCCTCCGCTCACTTACAAACGGTTCCAGACTCTAATCAGCCGAATGGACCCACCAGAGATGCCAGTGGAAACCCTCTCCAATACTATTATGGGCTGCTGCGTCACACCTGTCTCTGAAGACCATGGGGACAAATATGGTGTGCCCTCACTGGAAGAACTAGGATTTGACATCGAGGACTACCTTCTGCTGTCTGGCCAGGAGGTGAAACGGAGGCTTTAACAAGGATTGAAAGGCATCTGGAGCGAAAGgcATGGGTTGCAAATTTTGAAAGACCCAGAATGAATGCCAACTCTTTGCTAGCCAGTCCGACTGGCTTGAGTCCCTACCTCCGTTTCGGCTGCCTCTCCTGCCGCCTCTTCTATTTCAAACTTACAGACCTCTACAGGAAGGTAAAGAAAAACAGCACTCCTCCACTCTCCCTCTATGGTCAGCTGCTGTGGAGGGAATTTTTCTACACTGCCGCCACCACCAACCCACGATTTGATAAGATGGAAGGTAACCCGATCTGTGTGCGCATCCCTTGGGACAAAAACCAGAGGCTTTGGCCAAATGGGCTGAAGCTAAGACAGGTTTTCCATGGATTGATGCCATTATGACCCAGCTGAGGCAGGAGGGCTGGATCCACCACCTGGCCCGTCATGCTGTCGCTTGTTTTCTCACTCGTGGAGACCTGTGGATCAGTTGGGAAGAGGGCATGAAGGTGCATCTCTTTCAcatagcacatttttttttccttttgttttggtAGAGCTgagttttttaaatttgacattcaGGAGATCCAAGTGATATTAAGGGAAAATaatgtgaggggaaaaaatgataaatacagCATTGCAAAATGTTGTCAATCTAAATGACAAATTACTTATCTCAGTACAGATGAATAGCCATTTACACATGCAACCCGTATTCAGCCACACCATTTTGGGTTAAAACTGTTGATCTACGCTGCACCTTCAGTGGGTTGCAGCGCGTGGGCCAGTAGAGTTGCACAGTACCACTGCAGTTAATGGCGATGATGCAGTGTAGTCTGCTTTTTGTTCTCAGAACAATACTTTGAATGCATGAAGAGCATGTTTATTAGAACTGTATATGAATTTATGAaggatgaatttaaaaatggcaCTTCATATCAGAAAAGTTGCTGGCCTCTGTTATTGGAGAATATAAAAatttgatggatggatagattttAGTTTAAAGTCCTTGAGTGTTAAGGACACACAAGCAGTGACAATGGAGtgactactttttaaaaattttatttcccTGAATTTCTCcattaaaaatttgaaaatgctTAGTCATGGAAAGACTGACTACAAAACTGCAGTTTGTTTTCA

Function

NR:

description
PREDICTED: cryptochrome-1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92796 False 1412 TUCP 0.45 6 10431802 10440496
TU92799 True 1971 TUCP 0.45 8 10468874 10478799

Neighbor

gene id symbol gene type direction distance location
cry3a cry1ba,LOC107668038,LOC108441644,LOC108265656 coding upstream 45714 10370327 ~ 10386088 (+)
spryd4 spryd4,LOC107731260,LOC107585895,LOC107585896,LOC107549155,LOC107745790,LOC107668079,LOC107695231 coding upstream 102023 10327300 ~ 10329779 (+)
porcn porcn,LOC107668076,LOC107731151,LOC107585894,LOC107745789,LOC108441640 coding upstream 104951 10320692 ~ 10326851 (+)
magoh magoh,mgn,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding upstream 115649 10314638 ~ 10316153 (+)
uck2a uck2a,LOC107731246,LOC107668082,LOC107585889,LOC107745792,LOC107695269,LOC107549113,LOC106584056 coding upstream 118464 10302292 ~ 10313338 (+)
LOC122349960 itpr3,LOC107731245,LOC107745784 coding downstream 16089 10494888 ~ 10519569 (+)
alas2 alas2,LOC107555603,LOC107745783,LOC107549233,LOC108441648,LOC108265738,LOC107667982 coding downstream 40896 10519695 ~ 10526070 (+)
LOC122349965 ela2,LOC107668061,LOC107555594,LOC107731230,LOC102217447,LOC107745828 coding downstream 54938 10533737 ~ 10535560 (+)
LOC122351073 LOC107555585,LOC107731134,LOC107695233,LOC107667986,LOC107745826,LOC101883956 coding downstream 74102 10552901 ~ 10557260 (+)
LOC122351050 ajap1,LOC107731270,LOC107745781,LOC107668121,LOC107555602,LOC107695280,LOC107549259 coding downstream 180602 10659401 ~ 10705542 (+)
G62739 NA non-coding upstream 9240 10421853 ~ 10422562 (+)
G62733 NA non-coding upstream 89599 10341953 ~ 10342203 (+)
G62732 LOC107731259 non-coding upstream 93133 10338105 ~ 10338669 (+)
G62691 NA non-coding upstream 139582 10233598 ~ 10292220 (+)
G62697 NA non-coding upstream 190675 10235180 ~ 10241127 (+)
G62743 NA non-coding downstream 48180 10526979 ~ 10530687 (+)
G62868 NA non-coding downstream 320894 10799693 ~ 10799975 (+)
G62873 NA non-coding downstream 340418 10819217 ~ 10819417 (+)
G62896 NA non-coding downstream 492913 10971712 ~ 11143096 (+)
G62897 NA non-coding downstream 494448 10973247 ~ 10973966 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other upstream 63939 10348914 ~ 10367863 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other upstream 726163 9704481 ~ 9705639 (+)
smim15 smim15,LOC107700545 other upstream 1953471 8477171 ~ 8478331 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 2902716 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 3582091 6848481 ~ 6849711 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 57344 10536143 ~ 10551791 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 713925 11192724 ~ 11197803 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other downstream 816006 11294805 ~ 11311433 (+)
plp2a NA other downstream 963170 11441969 ~ 11445008 (+)
slc17a9a slc17a9a,LOC107731251,LOC107668105,LOC107549987,LOC107745761,LOC107549524 other downstream 1055701 11534500 ~ 11541121 (+)

Expression


Co-expression Network